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MCL coexpression mm9:323: Difference between revisions

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|ontology_enrichment_uberon=UBERON:0004535!1.42e-08!23;UBERON:0001009!1.42e-08!23;UBERON:0003103!9.56e-08!43;UBERON:0002048!2.49e-07!14;UBERON:0000117!2.49e-07!14;UBERON:0000171!2.49e-07!14;UBERON:0000170!2.49e-07!14;UBERON:0005597!2.49e-07!14;UBERON:0000118!2.49e-07!14;UBERON:0004872!3.17e-07!33
|ontology_enrichment_uberon=UBERON:0004535!1.42e-08!23;UBERON:0001009!1.42e-08!23;UBERON:0003103!9.56e-08!43;UBERON:0002048!2.49e-07!14;UBERON:0000117!2.49e-07!14;UBERON:0000171!2.49e-07!14;UBERON:0000170!2.49e-07!14;UBERON:0005597!2.49e-07!14;UBERON:0000118!2.49e-07!14;UBERON:0004872!3.17e-07!33
|tfbs_overrepresentation_for_novel_motifs=0.317337,0.0329936,0.082828,1.80609,0.619074,0.126473,0.1827,0.171073,0.0154185,0.135725,0.154519,0.174808,0.171442,0.19087,1.97385,0,0.333505,0.327284,0.0111819,0.0473002,0.0661203,0.123805,0.190264,0.146692,0.292091,0.60292,0.00992949,0.429523,0.0537016,0.0837629,0.13045,1.06944,0.137902,0.411336,0.0433193,0.00309599,0.0315753,0.172462,0.263333,0.212494,0.335087,0.133472,2.09058,0.168167,0.0132507,0.112117,0.271716,0.45352,0.356355,0.776322,0.319672,0.228569,0.0249155,0.538915,0.554419,0.195691,0.806193,0.166575,0.0445116,0.194311,0.39965,0.235329,1.34134,0.310832,0.20328,1.62649,0.678037,1.00855,0.395762,0.867464,0.0740354,0.354986,0.000978947,1.42842,0.0408837,0.606254,0.234136,0.263199,0.38541,0.0679477,1.64685,0.347414,0.234292,0.544327,0.48244,0.000561718,9.15153e-05,0.333186,0.275409,1.16606,0.74267,0.486763,0.427209,0.0395006,0.0245071,0.699836,0.0630984,0.429584,0.271907,0.142347,0.0315985,0.416179,0.523506,0.8571,0.31931,0.133214,0.367229,0.145827,0.0700831,0.0668927,0.307666,0.525078,0.068441,1.48398,0.749248,0.600735,0.0064379,0.120391,0.334542,1.69373,1.43865,0.799492,0.210922,0.262524,0.800032,1.00844,0.188119,0.421488,0.67664,0.157621,0.508573,0.114231,0.649498,0.205008,0.769462,3.48535,0.100083,0.134301,0.723554,1.52843,1.13499,0.682379,1.83178,0.425235,0.31422,0.416785,0.274066,1.4892,0.680093,0.0381381,0.189028,0.00056979,0.540306,0.724307,0.204372,0.613593,0.229288,0.402704,0.313953,1.64388,0.732404,0.481698,0.388835,0.304588,0.837993,0.578243,0.127618,0.516562,0.0361238
|tfbs_overrepresentation_for_novel_motifs=0.317337,0.0329936,0.082828,1.80609,0.619074,0.126473,0.1827,0.171073,0.0154185,0.135725,0.154519,0.174808,0.171442,0.19087,1.97385,0,0.333505,0.327284,0.0111819,0.0473002,0.0661203,0.123805,0.190264,0.146692,0.292091,0.60292,0.00992949,0.429523,0.0537016,0.0837629,0.13045,1.06944,0.137902,0.411336,0.0433193,0.00309599,0.0315753,0.172462,0.263333,0.212494,0.335087,0.133472,2.09058,0.168167,0.0132507,0.112117,0.271716,0.45352,0.356355,0.776322,0.319672,0.228569,0.0249155,0.538915,0.554419,0.195691,0.806193,0.166575,0.0445116,0.194311,0.39965,0.235329,1.34134,0.310832,0.20328,1.62649,0.678037,1.00855,0.395762,0.867464,0.0740354,0.354986,0.000978947,1.42842,0.0408837,0.606254,0.234136,0.263199,0.38541,0.0679477,1.64685,0.347414,0.234292,0.544327,0.48244,0.000561718,9.15153e-05,0.333186,0.275409,1.16606,0.74267,0.486763,0.427209,0.0395006,0.0245071,0.699836,0.0630984,0.429584,0.271907,0.142347,0.0315985,0.416179,0.523506,0.8571,0.31931,0.133214,0.367229,0.145827,0.0700831,0.0668927,0.307666,0.525078,0.068441,1.48398,0.749248,0.600735,0.0064379,0.120391,0.334542,1.69373,1.43865,0.799492,0.210922,0.262524,0.800032,1.00844,0.188119,0.421488,0.67664,0.157621,0.508573,0.114231,0.649498,0.205008,0.769462,3.48535,0.100083,0.134301,0.723554,1.52843,1.13499,0.682379,1.83178,0.425235,0.31422,0.416785,0.274066,1.4892,0.680093,0.0381381,0.189028,0.00056979,0.540306,0.724307,0.204372,0.613593,0.229288,0.402704,0.313953,1.64388,0.732404,0.481698,0.388835,0.304588,0.837993,0.578243,0.127618,0.516562,0.0361238
|tfbs_overrepresentation_jaspar=MA0003.1;4.49128e-05,MA0004.1;0.118549,MA0006.1;0.161227,MA0007.1;0.356106,MA0009.1;0.438777,MA0014.1;0.00202333,MA0017.1;2.13053,MA0019.1;0.790934,MA0024.1;0.401898,MA0025.1;1.55622,MA0027.1;2.02409,MA0028.1;0.691856,MA0029.1;0.383872,MA0030.1;0.389298,MA0031.1;0.360121,MA0038.1;0.209603,MA0040.1;1.14099,MA0041.1;0.971684,MA0042.1;0.0734808,MA0043.1;0.522621,MA0046.1;0.469568,MA0048.1;0.0033318,MA0050.1;0.141024,MA0051.1;0.215828,MA0052.1;0.456356,MA0055.1;0.0121237,MA0056.1;0,MA0057.1;0.0160496,MA0058.1;0.0704409,MA0059.1;0.0759876,MA0060.1;0.678878,MA0061.1;0.0263971,MA0063.1;0,MA0066.1;0.20204,MA0067.1;0.748059,MA0068.1;0.0173384,MA0069.1;0.456647,MA0070.1;0.448343,MA0071.1;0.433998,MA0072.1;0.44111,MA0073.1;9.10986e-08,MA0074.1;0.178027,MA0076.1;1.22874,MA0077.1;0.422739,MA0078.1;1.24989,MA0081.1;0.0869359,MA0083.1;0.521922,MA0084.1;1.0607,MA0087.1;0.484199,MA0088.1;0.130249,MA0089.1;0,MA0090.1;0.674294,MA0091.1;0.125983,MA0092.1;0.329408,MA0093.1;0.0482497,MA0095.1;0,MA0098.1;0,MA0100.1;2.22511,MA0101.1;0.0801429,MA0103.1;0.780527,MA0105.1;0.223957,MA0106.1;0.244965,MA0107.1;0.0529506,MA0108.2;0.308463,MA0109.1;0,MA0111.1;0.348856,MA0113.1;0.224694,MA0114.1;0.265028,MA0115.1;0.525089,MA0116.1;0.161005,MA0117.1;1.24255,MA0119.1;0.275337,MA0122.1;0.514153,MA0124.1;1.66708,MA0125.1;1.52529,MA0130.1;0,MA0131.1;0.287321,MA0132.1;0,MA0133.1;0,MA0135.1;0.554905,MA0136.1;0.191208,MA0139.1;0.0129832,MA0140.1;0.170444,MA0141.1;0.226841,MA0142.1;1.64575,MA0143.1;1.23876,MA0144.1;0.270735,MA0145.1;0.00796589,MA0146.1;0.00387947,MA0147.1;0.0299713,MA0148.1;0.401483,MA0149.1;0.0827548,MA0062.2;0.645231,MA0035.2;0.173482,MA0039.2;0.000262549,MA0138.2;0.769269,MA0002.2;0.169578,MA0137.2;0.062153,MA0104.2;0.0161848,MA0047.2;1.13392,MA0112.2;0.0289203,MA0065.2;1.09952,MA0150.1;0.355945,MA0151.1;0,MA0152.1;1.13421,MA0153.1;0.569763,MA0154.1;0.0191591,MA0155.1;2.31702,MA0156.1;0.805459,MA0157.1;0.322822,MA0158.1;0,MA0159.1;0.0329227,MA0160.1;0.405937,MA0161.1;0,MA0162.1;0.000333298,MA0163.1;0.00130201,MA0164.1;0.191451,MA0080.2;0.0532921,MA0018.2;0.197998,MA0099.2;0.276491,MA0079.2;2.82005e-07,MA0102.2;1.11159,MA0258.1;0.02239,MA0259.1;0.0270156,MA0442.1;0
}}
}}

Revision as of 11:33, 23 January 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:85763291..85763307,+p1@Timp3
Mm9::chr10:85801152..85801169,+p@chr10:85801152..85801169
+
Mm9::chr10:85806683..85806702,+p@chr10:85806683..85806702
+
Mm9::chr10:85807298..85807307,+p@chr10:85807298..85807307
+
Mm9::chr10:85807342..85807362,+p@chr10:85807342..85807362
+
Mm9::chr10:85807371..85807392,+p@chr10:85807371..85807392
+
Mm9::chr10:85808565..85808585,+p@chr10:85808565..85808585
+
Mm9::chr10:85808862..85808883,+p@chr10:85808862..85808883
+
Mm9::chr10:85808890..85808908,+p@chr10:85808890..85808908
+
Mm9::chr10:85808973..85808989,+p@chr10:85808973..85808989
+
Mm9::chr10:85809278..85809288,+p@chr10:85809278..85809288
+
Mm9::chr10:85809948..85809959,+p@chr10:85809948..85809959
+
Mm9::chr10:85810075..85810102,+p@chr10:85810075..85810102
+
Mm9::chr10:85810108..85810124,+p@chr10:85810108..85810124
+
Mm9::chr10:85810250..85810268,+p@chr10:85810250..85810268
+
Mm9::chr10:85810283..85810294,+p@chr10:85810283..85810294
+
Mm9::chr10:85810296..85810311,+p@chr10:85810296..85810311
+
Mm9::chr10:85810558..85810570,+p@chr10:85810558..85810570
+
Mm9::chr10:85810822..85810836,+p@chr10:85810822..85810836
+
Mm9::chr10:85810874..85810914,+p@chr10:85810874..85810914
+
Mm9::chr10:85810950..85810968,+p@chr10:85810950..85810968
+
Mm9::chr10:85811098..85811113,+p@chr10:85811098..85811113
+
Mm9::chr10:85811219..85811231,+p@chr10:85811219..85811231
+
Mm9::chr10:85811710..85811749,+p@chr10:85811710..85811749
+
Mm9::chr12:103048063..103048075,-p@chr12:103048063..103048075
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
cardiovascular system1.42e-0823
circulatory system1.42e-0823
compound organ9.56e-0843
lung2.49e-0714
respiratory tube2.49e-0714
respiration organ2.49e-0714
pair of lungs2.49e-0714
lung primordium2.49e-0714
lung bud2.49e-0714
splanchnic layer of lateral plate mesoderm3.17e-0733


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.14.49128e-05
MA0004.10.118549
MA0006.10.161227
MA0007.10.356106
MA0009.10.438777
MA0014.10.00202333
MA0017.12.13053
MA0019.10.790934
MA0024.10.401898
MA0025.11.55622
MA0027.12.02409
MA0028.10.691856
MA0029.10.383872
MA0030.10.389298
MA0031.10.360121
MA0038.10.209603
MA0040.11.14099
MA0041.10.971684
MA0042.10.0734808
MA0043.10.522621
MA0046.10.469568
MA0048.10.0033318
MA0050.10.141024
MA0051.10.215828
MA0052.10.456356
MA0055.10.0121237
MA0056.10
MA0057.10.0160496
MA0058.10.0704409
MA0059.10.0759876
MA0060.10.678878
MA0061.10.0263971
MA0063.10
MA0066.10.20204
MA0067.10.748059
MA0068.10.0173384
MA0069.10.456647
MA0070.10.448343
MA0071.10.433998
MA0072.10.44111
MA0073.19.10986e-08
MA0074.10.178027
MA0076.11.22874
MA0077.10.422739
MA0078.11.24989
MA0081.10.0869359
MA0083.10.521922
MA0084.11.0607
MA0087.10.484199
MA0088.10.130249
MA0089.10
MA0090.10.674294
MA0091.10.125983
MA0092.10.329408
MA0093.10.0482497
MA0095.10
MA0098.10
MA0100.12.22511
MA0101.10.0801429
MA0103.10.780527
MA0105.10.223957
MA0106.10.244965
MA0107.10.0529506
MA0108.20.308463
MA0109.10
MA0111.10.348856
MA0113.10.224694
MA0114.10.265028
MA0115.10.525089
MA0116.10.161005
MA0117.11.24255
MA0119.10.275337
MA0122.10.514153
MA0124.11.66708
MA0125.11.52529
MA0130.10
MA0131.10.287321
MA0132.10
MA0133.10
MA0135.10.554905
MA0136.10.191208
MA0139.10.0129832
MA0140.10.170444
MA0141.10.226841
MA0142.11.64575
MA0143.11.23876
MA0144.10.270735
MA0145.10.00796589
MA0146.10.00387947
MA0147.10.0299713
MA0148.10.401483
MA0149.10.0827548
MA0062.20.645231
MA0035.20.173482
MA0039.20.000262549
MA0138.20.769269
MA0002.20.169578
MA0137.20.062153
MA0104.20.0161848
MA0047.21.13392
MA0112.20.0289203
MA0065.21.09952
MA0150.10.355945
MA0151.10
MA0152.11.13421
MA0153.10.569763
MA0154.10.0191591
MA0155.12.31702
MA0156.10.805459
MA0157.10.322822
MA0158.10
MA0159.10.0329227
MA0160.10.405937
MA0161.10
MA0162.10.000333298
MA0163.10.00130201
MA0164.10.191451
MA0080.20.0532921
MA0018.20.197998
MA0099.20.276491
MA0079.22.82005e-07
MA0102.21.11159
MA0258.10.02239
MA0259.10.0270156
MA0442.10
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