FFCP PHASE1:Hg19::chr7:41728212..41728233,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C775|description=CAGE_peak_at_chr7:41728212..41728233,-|id=chr7:41728212..41728233,-|ontology_enrichment_celltype=CL:0000055!3.66e-11!180;CL:0000144!1.61e-10!625;CL:0002334!5.98e-10!12;CL:0002371!1.20e-09!591;CL:0000548!5.34e-08!679;CL:0000004!5.34e-08!679;CL:0000255!5.34e-08!679;CL:0000359!6.51e-08!32;CL:0000012!1.01e-07!682;CL:0000723!1.56e-07!436;CL:0000034!4.74e-07!444;CL:0000048!5.34e-07!430|ontology_enrichment_celltype_v019=CL:0002334;3.20e-13;12!CL:0002615;2.14e-10;3!CL:0000138;6.93e-09;6!CL:0000153;7.30e-09;9!CL:0000447;7.30e-09;9!CL:0002593;6.93e-08;2!CL:0002583;1.75e-07;2!CL:0000327;3.04e-07;15|ontology_enrichment_celltype_v019_2=CL:0002334,3.61e-13,12;CL:0002615,4.43e-10,3;CL:0000058,4.19e-09,6;CL:0000138,4.19e-09,6;CL:0000153,6.65e-09,9;CL:0000447,6.65e-09,9;CL:0002583,8.73e-08,2;CL:0002593,1.07e-07,2;CL:0000327,3.29e-07,15|ontology_enrichment_development_v019=|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000914!1.10e-07!83;UBERON:0002329!1.10e-07!83;UBERON:0003077!1.10e-07!83;UBERON:0003059!1.10e-07!83;UBERON:0007282!1.10e-07!83;UBERON:0009618!1.10e-07!83;UBERON:0007285!1.10e-07!83;UBERON:0003688!3.38e-07!6;UBERON:0002358!3.38e-07!6;UBERON:0003684!3.38e-07!6;UBERON:0001178!3.38e-07!6|ontology_enrichment_uberon_v019=UBERON:0003688;2.53e-14;6!UBERON:0002358;2.53e-14;6!UBERON:0003684;2.53e-14;6!UBERON:0001178;2.53e-14;6!UBERON:0004457;3.40e-13;9!UBERON:0000042;3.40e-13;9!UBERON:0001708;6.66e-08;4!UBERON:0008895;6.66e-08;4!UBERON:0002456;6.93e-08;2!UBERON:0003104;7.73e-08;7!UBERON:0009142;7.73e-08;7|ontology_enrichment_uberon_v019_2=UBERON:0003688,4.74e-14,6;UBERON:0002358,4.74e-14,6;UBERON:0003684,4.74e-14,6;UBERON:0001178,4.74e-14,6;UBERON:0004457,1.93e-09,12;UBERON:0000042,1.93e-09,12;UBERON:0001708,4.54e-08,4;UBERON:0008895,4.54e-08,4;UBERON:0002456,1.07e-07,2|phase1_expression=0.726713517082227,0.642301571672949,1.55049844505568,1.0007329835313,1.34088328328186,8.72338524100369,0,0,0,0,0,0.436882744260345,0.527533956456907,0.247532705920093,0.662794751455832,0.672325146451775,1.80808358407193,0.730310090387373,0.975865597581014,0,0,0,0.286235987131057,0.136874425072884,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0.256160706529101,0,0.689491361473237,0.645484683583826,2.70852973188684,0.188242339542605,0,0,1.22433556948361,0,1.27867425159808,0,0,0,0.580418477257168,0,1.86846674698672,0,0,0.434377689410233,0,0.736555271975129,0.632924774881769,0,0.212604299965044,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,1.00267582127178,1.88300474649071,1.5905718941022,1.94653948121054,0.0945348171640679,0.443458794925128,0.790513071238134,0.0654895377488563,0,0,0.324547393654683,0.174129737299267,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,0.759783069987479,0,1.43418310374407,0.709336764396714,1.12135520028461,1.06748995729705,2.71334303258876,0,0,0.163461903113459,0,0,0,0,0,0.149448680551801,0.117434498643765,0,0,0,0.245668634623536,0,0,0.494533858557114,0,0,0.168336113954066,0,0,0.438977620880838,0.612975591598039,0.600952235626387,0,0.358779271377724,0.427114777637135,0,0,0.103052529238439,0,0.37223371266318,0.337552664482532,0,0,0,0,1.06502877754984,0,0.169560592310488,0.966304265816484,2.18196896472668,0.286804595389004,0,0,0,0.10366105501537,0,0.36497735907583,0,0.643240938192885,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.982827216677626,0,0,0,0,0.439001141634502,0,1.10581869652794,0.925884451585296,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,1.87467667973554,1.84780341018745,0.708875486211932,0.53735113621709,0.871901815541886,0,0.985326475791887,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,1.68053230485111,0,1.690605505112,0.26593811658487,0,0,0,0,0.285955987316295,0,0.823240336780769,0.325736184293735,0.355391948742546,1.58390374586686,0,0,0.299918973546171,0,0,0,0.718874566474748,2.29723871668228,0,0.868687840005475,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0.831883446123229,1.24900292158013,0.630809660135739,0.35142424497814,0.300946099727719,0,0,0.664225598535437,0.553107505625109,0,0,0,0,0,0,0,1.66435439510497,0,1.24053903909388,0.920771839728375,2.24528075546459,0.896974044789907,4.60536524160033,12.5466058492014,0,1.85051632563187,1.59805552781814,0.410635780069046,1.03850885836724,0.813472649219715,0,1.20303882181971,0.0920809889358963,0,0.364182336013434,0.131124414959424,0,0.15403067420883,0,0,0.211103257785751,0,0,0.431831832204279,0,0,0,0,0,0,0,0,0,0,0,0.309123034943167,0.0915694648183434,0.165018999841176,0,0,0,0,0,0,0.275673144969061,0,0.145016693914229,0.170453254832202,0,0.330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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C775 | |||
|description=CAGE_peak_at_chr7:41728212..41728233,- | |||
|id=chr7:41728212..41728233,- | |||
|ontology_enrichment_celltype=CL:0000055!3.66e-11!180;CL:0000144!1.61e-10!625;CL:0002334!5.98e-10!12;CL:0002371!1.20e-09!591;CL:0000548!5.34e-08!679;CL:0000004!5.34e-08!679;CL:0000255!5.34e-08!679;CL:0000359!6.51e-08!32;CL:0000012!1.01e-07!682;CL:0000723!1.56e-07!436;CL:0000034!4.74e-07!444;CL:0000048!5.34e-07!430 | |||
|ontology_enrichment_celltype_v019=CL:0002334;3.20e-13;12!CL:0002615;2.14e-10;3!CL:0000138;6.93e-09;6!CL:0000153;7.30e-09;9!CL:0000447;7.30e-09;9!CL:0002593;6.93e-08;2!CL:0002583;1.75e-07;2!CL:0000327;3.04e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0002334,3.61e-13,12;CL:0002615,4.43e-10,3;CL:0000058,4.19e-09,6;CL:0000138,4.19e-09,6;CL:0000153,6.65e-09,9;CL:0000447,6.65e-09,9;CL:0002583,8.73e-08,2;CL:0002593,1.07e-07,2;CL:0000327,3.29e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!1.10e-07!83;UBERON:0002329!1.10e-07!83;UBERON:0003077!1.10e-07!83;UBERON:0003059!1.10e-07!83;UBERON:0007282!1.10e-07!83;UBERON:0009618!1.10e-07!83;UBERON:0007285!1.10e-07!83;UBERON:0003688!3.38e-07!6;UBERON:0002358!3.38e-07!6;UBERON:0003684!3.38e-07!6;UBERON:0001178!3.38e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;2.53e-14;6!UBERON:0002358;2.53e-14;6!UBERON:0003684;2.53e-14;6!UBERON:0001178;2.53e-14;6!UBERON:0004457;3.40e-13;9!UBERON:0000042;3.40e-13;9!UBERON:0001708;6.66e-08;4!UBERON:0008895;6.66e-08;4!UBERON:0002456;6.93e-08;2!UBERON:0003104;7.73e-08;7!UBERON:0009142;7.73e-08;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,4.74e-14,6;UBERON:0002358,4.74e-14,6;UBERON:0003684,4.74e-14,6;UBERON:0001178,4.74e-14,6;UBERON:0004457,1.93e-09,12;UBERON:0000042,1.93e-09,12;UBERON:0001708,4.54e-08,4;UBERON:0008895,4.54e-08,4;UBERON:0002456,1.07e-07,2 | |||
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| |||
|short_description=p@chr7:41728212..41728233,- | |||
}} |
Revision as of 01:13, 14 September 2013
Short description: | p@chr7:41728212..41728233, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr7:41728212..41728233, - |
Coexpression cluster: | C775_hepatic_Preadipocyte_Mallassezderived_mesenchymal_Smooth_spindle_pagetoid |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
preadipocyte | 3.61e-13 | 12 |
adipocyte of omentum tissue | 4.43e-10 | 3 |
chondroblast | 4.19e-09 | 6 |
chondrocyte | 4.19e-09 | 6 |
GAG secreting cell | 6.65e-09 | 9 |
carbohydrate secreting cell | 6.65e-09 | 9 |
subcutaneous preadipocyte | 8.73e-08 | 2 |
smooth muscle cell of the internal thoracic artery | 1.07e-07 | 2 |
extracellular matrix secreting cell | 3.29e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
omentum | 4.74e-14 | 6 |
peritoneum | 4.74e-14 | 6 |
abdominal cavity | 4.74e-14 | 6 |
visceral peritoneum | 4.74e-14 | 6 |
cavity lining | 1.93e-09 | 12 |
serous membrane | 1.93e-09 | 12 |
jaw skeleton | 4.54e-08 | 4 |
splanchnocranium | 4.54e-08 | 4 |
internal thoracic artery | 1.07e-07 | 2 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.