FFCP PHASE1:Hg19::chr19:18897438..18897467,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1311 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2227 | |||
|TSSclassifier=weak | |||
|UniProt= | |||
|association_with_transcript=376bp_to_ENST00000546510_5end | |||
|coexpression_cluster_id=C240 | |||
|description=CAGE_peak_3_at_COMP_5end | |||
|id=chr19:18897438..18897467,- | |||
|ontology_enrichment_celltype=CL:0000136!4.06e-24!15;CL:0000153!2.91e-20!9;CL:0000447!2.91e-20!9;CL:0002334!1.30e-19!12;CL:0000667!3.90e-16!6;CL:0000058!3.90e-16!6;CL:0000138!3.90e-16!6;CL:0000057!2.33e-13!75;CL:0002580!7.82e-13!3;CL:0002615!9.14e-13!3;CL:0000327!1.19e-12!14;CL:0000135!1.63e-12!3;CL:0000386!1.63e-12!3;CL:0000388!1.63e-12!3;CL:0000499!1.97e-12!27;CL:0002579!3.62e-12!3;CL:0002617!2.83e-09!2;CL:0002620!1.11e-08!23;CL:0000055!1.90e-08!180;CL:0000325!5.20e-08!39 | |||
|ontology_enrichment_celltype_v019=CL:0000138;1.94e-29;6!CL:0002334;1.42e-28;12!CL:0000153;5.65e-28;9!CL:0000447;5.65e-28;9!CL:0000136;6.87e-27;13!CL:0002580;7.84e-23;3!CL:0002615;1.17e-22;3!CL:0000135;3.62e-22;3!CL:0000388;3.62e-22;3!CL:0002579;1.63e-21;3!CL:0000499;3.14e-19;28!CL:0000327;1.29e-16;15!CL:0002617;4.45e-16;2!CL:0002581;1.10e-08;1!CL:0002616;1.48e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000136,6.03e-30,15;CL:0000058,2.25e-29,6;CL:0000138,2.25e-29,6;CL:0002334,1.42e-28,12;CL:0000153,6.67e-28,9;CL:0000447,6.67e-28,9;CL:0002580,8.75e-23,3;CL:0002615,1.17e-22,3;CL:0000135,3.49e-22,3;CL:0000388,3.49e-22,3;CL:0002579,1.58e-21,3;CL:0000499,3.35e-19,28;CL:0000327,1.42e-16,15;CL:0002617,4.45e-16,2;CL:0000057,1.88e-09,76;CL:0000134,2.92e-09,354;CL:0002320,5.42e-09,361;CL:0002581,1.02e-08,1;CL:0002616,1.27e-08,1;CL:0000219,4.83e-08,386;CL:0000048,7.06e-07,427 | |||
|ontology_enrichment_development_v019=UBERON:0000358;2.74e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003688!3.52e-23!6;UBERON:0002358!3.52e-23!6;UBERON:0003684!3.52e-23!6;UBERON:0001178!3.52e-23!6;UBERON:0004457!1.33e-19!12;UBERON:0000042!1.33e-19!12;UBERON:0001443!1.41e-12!11;UBERON:0000043!1.63e-12!3;UBERON:0000310!5.36e-10!10;UBERON:0001013!3.41e-09!14;UBERON:0005406!4.90e-09!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;2.37e-42;6!UBERON:0002358;2.37e-42;6!UBERON:0003684;2.37e-42;6!UBERON:0001178;2.37e-42;6!UBERON:0004457;4.25e-38;9!UBERON:0000042;4.25e-38;9!UBERON:0007846;3.62e-22;3!UBERON:0000043;3.62e-22;3!UBERON:0007845;3.62e-22;3!UBERON:0000310;1.68e-18;10!UBERON:0001443;8.34e-17;11!UBERON:0005406;1.56e-15;2!UBERON:0001013;2.36e-08;14!UBERON:0002135;3.66e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003688,2.29e-42,6;UBERON:0002358,2.29e-42,6;UBERON:0003684,2.29e-42,6;UBERON:0001178,2.29e-42,6;UBERON:0004457,2.15e-28,12;UBERON:0000042,2.15e-28,12;UBERON:0007846,3.49e-22,3;UBERON:0000043,3.49e-22,3;UBERON:0007845,3.49e-22,3;UBERON:0000310,1.77e-18,10;UBERON:0001443,8.76e-17,11;UBERON:0005406,1.25e-15,2;UBERON:0002384,1.26e-08,371;UBERON:0001013,2.25e-08,14;UBERON:0002135,3.28e-08,1 | |||
|phase1_expression=20.1663000990318,20.1254492457524,5.92008497203079,30.0219895059391,9.83314407740033,7.85104671690332,7.59899634504932,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,2.00535164254356,6.80778639115871,7.15757352345989,19.4653948121054,0,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213557388818567,0,0.300091096084402,0,1.03056216018252,0.558350568994769,0.843881661206331,0.389748020644795,0.252433774244115,0,0,0,0.10075209822764,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.902838299183157,36.3852006489576,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,8.18755765801964,14.732349435654,19.3655465158821,2.56278298511402,3.58195074346692,2.2519548960105,8.90508398669946,0,0,0,0,0.348631135379878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.17765960012058,0.987884678879706,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114536596165916,0,0,0,0,0,0,0,0,0,0,0,0,0,1.39641200636127,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343395705182793,1.01024846629776,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496211178389294,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509781344063451,0,0,0,0,0,0,0,0,0,0,0,0,0,3.71995018166751,8.78133694399695,7.35465155610441,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0717222053926763,0,0,0,0,0,2.34640942403454,0,0,0,0.201273793591026,0 | |||
|short_description=p3@COMP | |||
}} |
Revision as of 22:16, 20 January 2014
Short description: | p3@COMP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_COMP_5end |
Coexpression cluster: | C240_Adipocyte_Preadipocyte_Osteoblast_Chondrocyte_tenocyte_Synoviocyte_mesenchymal |
Association with transcript: | 376bp_to_ENST00000546510_5end |
EntrezGene: | COMP |
HGNC: | 2227 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fat cell | 6.03e-30 | 15 |
chondroblast | 2.25e-29 | 6 |
chondrocyte | 2.25e-29 | 6 |
preadipocyte | 1.42e-28 | 12 |
GAG secreting cell | 6.67e-28 | 9 |
carbohydrate secreting cell | 6.67e-28 | 9 |
preadipocyte of the breast | 8.75e-23 | 3 |
adipocyte of omentum tissue | 1.17e-22 | 3 |
fibrocyte | 3.49e-22 | 3 |
tendon cell | 3.49e-22 | 3 |
omentum preadipocyte | 1.58e-21 | 3 |
stromal cell | 3.35e-19 | 28 |
extracellular matrix secreting cell | 1.42e-16 | 15 |
adipocyte of breast | 4.45e-16 | 2 |
fibroblast | 1.88e-09 | 76 |
mesenchymal cell | 2.92e-09 | 354 |
connective tissue cell | 5.42e-09 | 361 |
perirenal preadipocyte | 1.02e-08 | 1 |
perirenal adipocyte cell | 1.27e-08 | 1 |
motile cell | 4.83e-08 | 386 |
multi fate stem cell | 7.06e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
omentum | 2.29e-42 | 6 |
peritoneum | 2.29e-42 | 6 |
abdominal cavity | 2.29e-42 | 6 |
visceral peritoneum | 2.29e-42 | 6 |
cavity lining | 2.15e-28 | 12 |
serous membrane | 2.15e-28 | 12 |
dense regular connective tissue | 3.49e-22 | 3 |
tendon | 3.49e-22 | 3 |
regular connective tissue | 3.49e-22 | 3 |
breast | 1.77e-18 | 10 |
chest | 8.76e-17 | 11 |
perirenal fat | 1.25e-15 | 2 |
connective tissue | 1.26e-08 | 371 |
adipose tissue | 2.25e-08 | 14 |
mitral valve | 3.28e-08 | 1 |