FF:10001-101A3: Difference between revisions
From FANTOM5_SSTAR
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase= | |data_phase=2 | ||
|datafreeze_phase= | |datafreeze_phase=2 | ||
|def= | |def= | ||
|expression_enrichment_score=chr13:93346120..93346155,-!p1@Spz1!2.65!445.46!Spz1;;chr1:168168856..168168893,-!p1@Mael!2.62!413.57!Mael;;chr4:107356135..107356179,-!p1@Dmrtb1!2.58!379.89!Dmrtb1;;chr5:38611867..38611888,+!p2@Lyar!2.43!269.93!Lyar;;chr6:131338278..131338362,-!p2@Csda!2.35!631.28!Csda;;chr11:69749396..69749433,+!p1@Ybx2!2.35!222.64!Ybx2;;chr3:90046414..90046476,-!p1@Creb3l4!2.20!159.12!Creb3l4;;chr10:22451680..22451722,-!p3@Tbpl1!1.90!77.81!Tbpl1;;chr10:70701022..70701036,-!p3@Tfam!1.88!75.52!Tfam;;chr18:52775562..52775650,+!p1@Zfp474!1.82!65.23!Zfp474;;chr4:107356181..107356197,-!p2@Dmrtb1!1.80!62.59!Dmrtb1;;chr1:52043967..52043976,+!p5@Stat4!1.76!56.89!Stat4;;chr6:143895612..143895631,-!p3@Sox5!1.76!56.38!Sox5;;chr1:52065054..52065098,+!p4@Stat4!1.74!53.92!Stat4;;chr16:50331100..50331130,-!p3@Bbx!1.72!51.11!Bbx;;chr4:149610794..149610876,+!p2@LOC100045967,p2@LOC100503183,p3@Eno1,p3@Gm5506!1.69!64.80!Eno1;;chr12:100009228..100009251,+!p2@Zc3h14!1.69!48.05!Zc3h14;;chr18:3309876..3309914,-!p9@Crem!1.64!42.35!Crem;;chr18:50438025..50438057,+!p1@Fam170a!1.62!40.48!Fam170a;;chr2:180377386..180377462,-!p1@Tcfl5!1.61!47.37!Tcfl5;;chr10:22451724..22451752,-!p4@Tbpl1!1.61!39.55!Tbpl1;;chr5:138202908..138202942,+!p10@Tsc22d4!1.60!38.78!Tsc22d4;;chr16:50331135..50331178,-!p5@Bbx!1.57!36.14!Bbx;;chr1:168168817..168168850,-!p2@Mael!1.57!36.06!Mael;;chr18:3299535..3299565,-!p10@Crem!1.57!35.89!Crem;;chr10:84224957..84224991,+!p3@Rfx4!1.56!35.46!Rfx4;;chr2:17985983..17986035,+!p4@Mllt10!1.54!33.68!Mllt10;;chr5:38611831..38611842,+!p3@Lyar!1.54!33.42!Lyar;;chr6:143895581..143895604,-!p6@Sox5!1.53!33.17!Sox5;;chr6:52663997..52664043,+!p2@Tax1bp1!1.53!33.00!Tax1bp1;;chr1:52043983..52043995,+!p6@Stat4!1.51!31.64!Stat4;;chr15:36937522..36937543,-!p4@Gm10193,p4@Zfp706!1.50!30.96!Zfp706;;chr11:69749437..69749467,+!p3@Ybx2!1.50!30.87!Ybx2;;chr11:69749367..69749385,+!p4@Ybx2!1.50!30.79!Ybx2;;chr1:56694305..56694324,-!p1@Hsfy2!1.48!29.51!Hsfy2;;chr6:131338363..131338383,-!p4@Csda!1.45!117.53!Csda;;chrX:113562567..113562578,+!p1@Cpxcr1!1.44!26.70!Cpxcr1;;chr10:70698065..70698087,-!p4@Tfam!1.44!26.53!Tfam;;chr16:91270004..91270023,+!p1@Olig1!1.42!28.74!Olig1;;chr5:77543897..77543911,-!p2@Hopx!1.40!45.16!Hopx;;chr1:137155026..137155042,-!p1@Elf3!1.35!120.68!Elf3;;chr2:79296783..79296801,-!p1@Neurod1!1.35!21.43!Neurod1;;chr18:3299485..3299513,-!p12@Crem!1.35!21.35!Crem;;chr7:29552143..29552173,-!p4@Nfkbib!1.33!20.24!Nfkbib;;chr7:25655099..25655143,+!p1@Dmrtc2!1.32!19.99!Dmrtc2;;chr12:100009260..100009274,+!p3@Zc3h14!1.32!19.82!Zc3h14;;chr7:135020660..135020688,+!p3@Zfp646!1.31!26.70!Zfp646;;chr7:31383850..31383874,-!p1@Zbtb32!1.31!19.56!Zbtb32;;chr1:56694274..56694293,-!p2@Hsfy2!1.31!19.56!Hsfy2;;chr7:19953851..19953902,+!p4@Ppp1r13l!1.31!19.30!Ppp1r13l;;chr14:55489750..55489784,-!p2@Homez!1.30!19.13!Homez;;chr2:180377307..180377330,-!p2@Tcfl5!1.30!18.79!Tcfl5;;chr9:18282807..18282821,+!p1@Mbd3l1!1.28!18.11!Mbd3l1;;chr14:32979060..32979091,+!p4@Gm6768,p4@Ncoa4!1.28!17.94!Ncoa4;;chr10:88969376..88969395,-!p1@Nr1h4!1.27!17.60!Nr1h4;;chr4:118967319..118967330,-!p6@Ybx1!1.25!16.67!Ybx1;;chr10:5636354..5636373,-!p2@Esr1!1.24!16.33!Esr1;;chr6:52664044..52664072,+!p5@Tax1bp1!1.23!16.07!Tax1bp1;;chr11:87430678..87430702,+!p1@Hsf5!1.22!15.65!Hsf5;;chr14:32979026..32979042,+!p5@Gm6768,p5@Ncoa4!1.22!15.56!Ncoa4;;chr10:5636374..5636421,-!p1@Esr1!1.21!19.05!Esr1;;chr8:26950937..26950991,-!p3@Ash2l!1.21!17.94!Ash2l;;chr5:38611816..38611827,+!p4@Lyar!1.21!16.92!Lyar;;chr10:22539932..22539956,-!p1@Tcf21!1.20!39.55!Tcf21;;chr11:83664365..83664383,+!p1@Hnf1b!1.20!14.88!Hnf1b;;chr6:52859625..52859638,-!p3@Jazf1!1.20!14.71!Jazf1;;chr6:6832076..6832092,-!p1@Dlx5!1.19!16.75!Dlx5;;chr7:86937900..86937933,-!p@chr7:86937900..86937933,-!1.19!14.37!Mesp1;;chr5:138199361..138199441,+!p2@Tsc22d4!1.18!26.79!Tsc22d4;;chr2:24331085..24331100,-!p1@Pax8!1.18!14.29!Pax8;;chr11:116196698..116196713,-!p3@Foxj1!1.18!14.03!Foxj1;;chr3:90046478..90046489,-!p5@Creb3l4!1.17!13.69!Creb3l4;;chr10:67375368..67375433,-!p1@Zfp365!1.16!23.98!Zfp365;;chr11:52096066..52096081,-!p2@Tcf7!1.16!16.33!Tcf7;;chr6:52859575..52859603,-!p4@Jazf1!1.15!13.10!Jazf1;;chr17:56970481..56970551,-!p2@Rfx2!1.14!39.46!Rfx2;;chr3:95032515..95032553,-!p5@Mllt11!1.14!15.39!Mllt11;;chr9:18282826..18282845,+!p2@Mbd3l1!1.14!12.84!Mbd3l1;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.13!15.73!Pou3f3;;chr11:116196714..116196729,-!p2@Foxj1!1.13!12.59!Foxj1;;chr11:87430653..87430666,+!p2@Hsf5!1.13!12.50!Hsf5;;chr8:123608252..123608268,+!p1@Foxf1a!1.12!18.20!Foxf1a;;chr4:61869708..61869732,-!p5@Zfp37!1.12!12.33!Zfp37;;chr8:26958093..26958148,-!p2@Ash2l!1.12!12.25!Ash2l;;chr11:69749491..69749502,+!p6@Ybx2!1.12!12.25!Ybx2;;chr17:15637108..15637147,+!p3@Tbp!1.12!12.08!Tbp;;chr17:87153240..87153254,+!p1@Epas1!1.11!231.66!Epas1;;chr6:55631042..55631102,-!p1@Neurod6!1.11!11.74!Neurod6;;chr5:134782473..134782486,-!p12@Gtf2i!1.11!11.74!Gtf2i;;chr10:22451660..22451678,-!p7@Tbpl1!1.10!11.65!Tbpl1;;chr1:39777834..39777860,-!p1@Rfx8!1.10!11.57!Rfx8;;chr4:117438155..117438175,-!p1@Klf17,p1@LOC100504967!1.10!11.48!Klf17;;chr7:31383882..31383903,-!p2@Zbtb32!1.09!11.40!Zbtb32;;chrX:83437105..83437121,+!p1@Nr0b1!1.09!11.31!Nr0b1;;chr11:87430728..87430749,+!p3@Hsf5!1.09!11.31!Hsf5;;chr15:100058744..100058772,+!p4@Gm1862,p6@Atf1!1.09!11.23!Atf1;;chr11:95170996..95171026,-!p3@Myst2!1.08!11.14!Myst2;;chr2:160685337..160685366,-!p5@Zhx3!1.07!10.72!Zhx3;;chr11:116196664..116196679,-!p1@Foxj1!1.06!16.24!Foxj1;;chr11:59319921..59319944,-!p5@Zkscan17!1.06!10.55!Zkscan17;;chr9:91260594..91260612,-!p1@Zic1!1.06!10.55!Zic1;;chr4:102815657..102815676,+!p16@Mier1!1.06!10.55!Mier1;;chr11:45793811..45793839,+!p1@Sox30!1.06!10.38!Sox30;;chr10:102491694..102491714,-!p3@Alx1!1.05!10.21!Alx1;;chr4:61869757..61869771,-!p6@Zfp37!1.05!10.21!Zfp37;;chr10:22451765..22451795,-!p6@Tbpl1!1.04!15.05!Tbpl1;;chr19:59533221..59533271,+!p1@Emx2!1.04!12.33!Emx2;;chr6:85463580..85463585,-!p1@Egr4!1.04!9.95!Egr4;;chr17:51971960..51971979,-!p1@Satb1!1.03!13.01!Satb1;;chrX:113562548..113562557,+!p2@Cpxcr1!1.03!9.78!Cpxcr1;;chr9:91260616..91260653,-!p2@Zic1!1.03!9.69!Zic1;;chr2:163372884..163372904,+!p1@Hnf4a!1.03!9.69!Hnf4a;;chr4:63042249..63042287,-!p10@Akna!1.03!9.61!Akna;;chr9:111020746..111020768,+!p5@Lrrfip2!1.03!9.61!Lrrfip2;;chr11:69749320..69749345,+!p2@Ybx2!1.02!15.73!Ybx2;;chr15:100410635..100410667,-!p4@Pou6f1!1.02!9.44!Pou6f1;;chr14:32979005..32979017,+!p7@Gm6768,p7@Ncoa4!1.02!9.35!Ncoa4;;chr7:88007115..88007129,+!p2@Zscan2!1.01!9.18!Zscan2;;chr1:52065106..52065124,+!p7@Stat4!1.01!9.18!Stat4;;chr2:27565816..27565828,+!p10@Rxra!1.00!9.10!Rxra;;chr6:52859553..52859568,-!p6@Jazf1!1.00!9.01!Jazf1;;chr8:72356384..72356434,+!p2@Pbx4!0.99!13.61!Pbx4;;chr13:96094769..96094829,+!p4@Zbed3!0.99!12.59!Zbed3;;chr11:96143666..96143725,+!p1@Hoxb8!0.99!10.04!Hoxb8;;chr4:61869681..61869704,-!p3@Zfp37!0.99!8.84!Zfp37;;chr11:34108085..34108092,-!p1@Foxi1!0.99!8.76!Foxi1;;chr11:85699862..85699920,+!p1@Tbx4!0.99!8.67!Tbx4;;chr1:56694252..56694259,-!p3@Hsfy2!0.98!8.59!Hsfy2;;chr2:180377331..180377344,-!p3@Tcfl5!0.98!8.59!Tcfl5;;chr8:72356532..72356611,+!p1@Pbx4!0.97!35.38!Pbx4;;chr14:69789996..69790021,+!p1@Nkx2-6!0.97!8.33!Nkx2-6;;chr9:8900459..8900489,+!p1@Pgr!0.97!8.25!Pgr;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.96!24.24!Tfcp2l1;;chr5:136778385..136778407,-!p7@Cux1!0.96!8.08!Cux1;;chr11:98636531..98636559,-!p1@Nr1d1!0.95!46.26!Nr1d1;;chr10:84300848..84300879,+!p6@Rfx4!0.95!7.99!Rfx4;;chr12:86438030..86438041,-!p@chr12:86438030..86438041,-!0.95!7.91!Prox2;;chr19:19185671..19185693,-!p1@Rorb!0.94!18.96!Rorb;;chr16:3872378..3872411,-!p6@Zfp597!0.94!8.93!Zfp597;;chr12:81214217..81214219,-!p2@Zfp36l1!0.94!7.74!Zfp36l1;;chr10:84300905..84300919,+!p7@Rfx4!0.94!7.65!Rfx4;;chr4:61869733..61869751,-!p8@Zfp37!0.94!7.65!Zfp37;;chr2:74543397..74543435,+!p2@Hoxd8!0.94!7.65!Hoxd8;;chr2:38781916..38781974,-!p1@Nr6a1!0.93!23.56!Nr6a1;;chr16:55966407..55966447,+!p6@Rpl24,p6@Zbtb11!0.93!18.88!Zbtb11;;chr2:144157107..144157128,-!p3@Ovol2!0.93!7.57!Ovol2;;chr11:87430713..87430724,+!p4@Hsf5!0.93!7.57!Hsf5;;chr18:3309750..3309787,-!p21@Crem!0.93!7.48!Crem;;chr1:179374784..179374800,+!p2@Zfp238!0.92!8.59!Zfp238;;chr11:98190918..98190951,-!p1@Neurod2!0.92!7.40!Neurod2;;chr11:69749347..69749356,+!p8@Ybx2!0.92!7.23!Ybx2;;chr6:52190467..52190500,-!p1@Hoxa10!0.92!7.23!Hoxa10;;chr17:87153028..87153049,+!p2@Epas1!0.90!149.59!Epas1;;chr5:135582751..135582788,+!p1@Mlxipl!0.90!28.83!Mlxipl;;chr17:87153462..87153473,+!p3@Epas1!0.90!27.13!Epas1;;chr7:116154364..116154444,+!p1@Tub!0.90!12.16!Tub;;chr6:72850124..72850210,-!p7@Kcmf1!0.90!9.35!Kcmf1;;chr16:3872255..3872283,-!p4@Zfp597!0.89!10.04!Zfp597;;chr12:57636034..57636087,-!p1@Nkx2-1!0.89!6.80!Nkx2-1;;chr13:78164153..78164174,+!p1@Pou5f2!0.89!6.72!Pou5f2;;chr8:86590318..86590330,+!p3@Rfx1!0.89!6.72!Rfx1;;chr8:107033774..107033794,-!p1@Ccdc79!0.88!8.25!Ccdc79;;chr7:25655066..25655080,+!p2@Dmrtc2!0.88!6.63!Dmrtc2;;chr3:95032802..95032830,-!p7@Mllt11!0.88!6.63!Mllt11;;chr19:4989964..4989972,-!p1@Npas4!0.88!6.55!Npas4;;chr18:3337503..3337536,-!p7@Crem!0.87!11.48!Crem;;chr5:125342568..125342602,+!p2@Zfp664!0.87!10.72!Zfp664;;chr1:38721792..38721845,-!p1@Aff3!0.87!8.16!Aff3;;chr15:76353005..76353021,-!p2@Scrt1!0.87!6.38!Scrt1;;chr3:95032091..95032183,-!p1@Mllt11!0.86!57.23!Mllt11;;chr7:52960555..52960662,+!p1@Dbp!0.86!56.13!Dbp;;chr15:35225845..35225867,+!p1@Osr2!0.86!16.41!Osr2;;chr17:51971932..51971958,-!p2@Satb1!0.86!8.76!Satb1;;chr6:52195795..52195825,-!p1@Hoxa11!0.86!6.29!Hoxa11;;chr14:69790035..69790050,+!p2@Nkx2-6!0.86!6.21!Nkx2-6;;chr17:48015839..48015915,-!p3@Foxp4!0.85!7.31!Foxp4;;chr9:18282704..18282748,-!p3@Zfp558!0.85!6.04!Zfp558;;chr7:13420092..13420160,+!p2@Zfp110!0.84!11.65!Zfp110;;chr10:67375146..67375208,-!p2@Zfp365!0.84!9.44!Zfp365;;chr11:96143843..96143868,+!p3@Hoxb8!0.84!5.95!Hoxb8;;chr1:39777805..39777820,-!p2@Rfx8!0.84!5.95!Rfx8;;chr15:102828658..102828678,+!p1@Hoxc6!0.84!5.95!Hoxc6;;chr12:30219426..30219506,+!p2@Myt1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03!0.27!1.19!Zfp503;;chr12:39510042..39510069,+!p8@Etv1!0.27!0.85!Etv1;;chr12:39510260..39510271,+!p10@Etv1!0.27!0.85!Etv1;;chr15:76352832..76352900,-!p1@Scrt1!0.27!0.85!Scrt1;;chr11:52095797..52095809,-!p5@Tcf7!0.27!0.85!Tcf7;;chr11:90250999..90251013,-!p8@Hlf!0.27!0.85!Hlf;;chr16:43235969..43235989,+!p20@Zbtb20!0.27!0.85!Zbtb20;;chr15:95485240..95485257,-!p1@Dbx2!0.27!0.85!Dbx2;;chr6:38097421..38097440,-!p7@D630045J12Rik!0.27!0.85!D630045J12Rik;;chr6:52167434..52167450,-!p3@Hoxa7!0.27!0.85!Hoxa7;;chr5:122366729..122366766,-!p16@Cux2!0.27!0.85!Cux2;;chr5:140019843..140019858,+!p2@Uncx!0.27!0.85!Uncx;;chr6:88148324..88148328,+!p3@Gata2!0.27!0.85!Gata2;;chr5:77524175..77524186,-!p8@Hopx!0.27!0.85!Hopx;;chr6:144152648..144152680,-!p5@Sox5!0.27!0.85!Sox5;;chr8:87297330..87297365,-!p5@Nfix!0.27!0.85!Nfix;;chr9:98855944..98855971,+!p4@Foxl2!0.27!0.85!Foxl2;;chr3:3508005..3508021,+!p3@Hnf4g!0.27!0.85!Hnf4g;;chr5:106887474..106887489,-!p1@Barhl2!0.27!0.85!Barhl2;;chr4:6917763..6917782,-!p6@Tox!0.27!0.85!Tox;;chr4:135728311..135728342,+!p3@E2f2!0.27!0.85!E2f2;;chr1:135557400..135557421,-!p4@Zbed6!0.27!0.85!Zbed6;;chr2:169968173..169968178,-!p2@Zfp217!0.27!0.85!Zfp217;;chr19:6164433..6164446,+!p2@Batf2!0.27!0.85!Batf2;;chr2:104966662..104966673,+!p4@Wt1!0.27!0.85!Wt1;;chr6:35083688..35083730,-!p1@Cnot4!0.26!83.17!Cnot4;;chr16:15887371..15887385,+!p1@Cebpd!0.26!56.13!Cebpd;;chr7:35841486..35841575,-!p1@Cebpg!0.26!41.16!Cebpg;;chr16:22439681..22439698,-!p1@Etv5!0.26!28.15!Etv5;;chr5:145965392..145965443,+!p1@Zkscan5!0.26!14.29!Zkscan5;;chr6:86619104..86619119,-!p1@Mxd1!0.26!12.67!Mxd1;;chr7:71083428..71083518,-!p3@Klf13!0.26!11.99!Klf13;;chr14:98568761..98568814,-!p2@Dach1!0.26!10.72!Dach1;;chr10:30522690..30522752,-!p2@Ncoa7!0.26!9.27!Ncoa7;;chr5:120121020..120121049,+!p1@Tbx3!0.26!9.27!Tbx3;;chr4:120488308..120488366,-!p1@Nfyc!0.26!8.76!Nfyc;;chr5:104121453..104121479,+!p4@Aff1!0.26!6.89!Aff1;;chr8:112603610..112603656,+!p1@Zfp612!0.26!6.80!Zfp612;;chr14:18493386..18493464,+!p1@Thrb!0.26!5.53!Thrb;;chr15:50721515..50721540,-!p3@Trps1!0.26!4.08!Trps1;;chr16:42907554..42907591,+!p5@Zbtb20!0.26!3.40!Zbtb20;;chr2:165818108..165818119,+!p2@Ncoa3!0.26!3.40!Ncoa3;;chr2:128793085..128793116,+!p2@Zc3h6!0.26!3.23!Zc3h6;;chr13:99954688..99954710,+!p2@Zfp366!0.26!2.38!Zfp366;;chr7:25862363..25862382,+!p2@Zfp574!0.26!2.21!Zfp574;;chr4:119486912..119486954,+!p3@Hivep3!0.26!2.04!Hivep3;;chr4:135129538..135129558,-!p1@Grhl3!0.26!1.70!Grhl3;;chr8:124984566..124984595,-!p1@Snai3!0.26!1.70!Snai3;;chr1:133904946..133904974,+!p7@Elk4!0.26!1.70!Elk4;;chr19:23215554..23215567,+!p5@Klf9!0.26!1.45!Klf9;;chr5:107003725..107003746,-!p5@Zfp644!0.26!1.36!Zfp644;;chr6:72185179..72185196,-!p4@Atoh8!0.26!1.36!Atoh8;;chr18:36441100..36441113,+!p3@Pura!0.26!1.11!Pura;;chr8:94881872..94881887,+!p2@Irx5!0.26!0.94!Irx5;;chr8:74842952..74842970,+!p1@Klf2!0.25!108.09!Klf2;;chr5:21290933..21291050,-!p1@Dnajc2!0.25!59.70!Dnajc2;;chr19:5424906..5425026,-!p1@Drap1!0.25!43.12!Drap1;;chr17:25325325..25325363,+!p1@Unkl!0.25!11.40!Unkl;;chr1:138521528..138521572,+!p1@Zfp281!0.25!8.84!Zfp281;;chr11:62602904..62602945,-!p1@Zfp286!0.25!6.72!Zfp286;;chr9:63869850..63869873,-!p2@Smad6!0.25!4.00!Smad6;;chr19:28086084..28086124,-!p6@Rfx3!0.25!3.74!Rfx3;;chr6:92042363..92042413,+!p3@Nr2c2!0.25!3.15!Nr2c2;;chr10:127896024..127896045,+!p3@Smarcc2!0.25!3.15!Smarcc2;;chr11:70501599..70501634,-!p2@Camta2,p2@LOC100048818!0.25!2.55!Camta2;;chr16:43619057..43619078,+!p8@Zbtb20!0.25!2.55!Zbtb20;;chr11:3189171..3189197,+!p4@Patz1!0.25!2.30!Patz1;;chr9:96653241..96653288,-!p1@E030011O05Rik,p5@Zbtb38!0.25!2.21!Zbtb38;;chr16:92697354..92697362,-!p3@Runx1!0.25!1.70!Runx1;;chr17:46520492..46520515,+!p4@Zfp318!0.25!1.53!Zfp318;;chr11:11585678..11585745,+!p5@Ikzf1!0.25!1.53!Ikzf1;; | |expression_enrichment_score=chr13:93346120..93346155,-!p1@Spz1!2.65!445.46!Spz1;;chr1:168168856..168168893,-!p1@Mael!2.62!413.57!Mael;;chr4:107356135..107356179,-!p1@Dmrtb1!2.58!379.89!Dmrtb1;;chr5:38611867..38611888,+!p2@Lyar!2.43!269.93!Lyar;;chr6:131338278..131338362,-!p2@Csda!2.35!631.28!Csda;;chr11:69749396..69749433,+!p1@Ybx2!2.35!222.64!Ybx2;;chr3:90046414..90046476,-!p1@Creb3l4!2.20!159.12!Creb3l4;;chr10:22451680..22451722,-!p3@Tbpl1!1.90!77.81!Tbpl1;;chr10:70701022..70701036,-!p3@Tfam!1.88!75.52!Tfam;;chr18:52775562..52775650,+!p1@Zfp474!1.82!65.23!Zfp474;;chr4:107356181..107356197,-!p2@Dmrtb1!1.80!62.59!Dmrtb1;;chr1:52043967..52043976,+!p5@Stat4!1.76!56.89!Stat4;;chr6:143895612..143895631,-!p3@Sox5!1.76!56.38!Sox5;;chr1:52065054..52065098,+!p4@Stat4!1.74!53.92!Stat4;;chr16:50331100..50331130,-!p3@Bbx!1.72!51.11!Bbx;;chr4:149610794..149610876,+!p2@LOC100045967,p2@LOC100503183,p3@Eno1,p3@Gm5506!1.69!64.80!Eno1;;chr12:100009228..100009251,+!p2@Zc3h14!1.69!48.05!Zc3h14;;chr18:3309876..3309914,-!p9@Crem!1.64!42.35!Crem;;chr18:50438025..50438057,+!p1@Fam170a!1.62!40.48!Fam170a;;chr2:180377386..180377462,-!p1@Tcfl5!1.61!47.37!Tcfl5;;chr10:22451724..22451752,-!p4@Tbpl1!1.61!39.55!Tbpl1;;chr5:138202908..138202942,+!p10@Tsc22d4!1.60!38.78!Tsc22d4;;chr16:50331135..50331178,-!p5@Bbx!1.57!36.14!Bbx;;chr1:168168817..168168850,-!p2@Mael!1.57!36.06!Mael;;chr18:3299535..3299565,-!p10@Crem!1.57!35.89!Crem;;chr10:84224957..84224991,+!p3@Rfx4!1.56!35.46!Rfx4;;chr2:17985983..17986035,+!p4@Mllt10!1.54!33.68!Mllt10;;chr5:38611831..38611842,+!p3@Lyar!1.54!33.42!Lyar;;chr6:143895581..143895604,-!p6@Sox5!1.53!33.17!Sox5;;chr6:52663997..52664043,+!p2@Tax1bp1!1.53!33.00!Tax1bp1;;chr1:52043983..52043995,+!p6@Stat4!1.51!31.64!Stat4;;chr15:36937522..36937543,-!p4@Gm10193,p4@Zfp706!1.50!30.96!Zfp706;;chr11:69749437..69749467,+!p3@Ybx2!1.50!30.87!Ybx2;;chr11:69749367..69749385,+!p4@Ybx2!1.50!30.79!Ybx2;;chr1:56694305..56694324,-!p1@Hsfy2!1.48!29.51!Hsfy2;;chr6:131338363..131338383,-!p4@Csda!1.45!117.53!Csda;;chrX:113562567..113562578,+!p1@Cpxcr1!1.44!26.70!Cpxcr1;;chr10:70698065..70698087,-!p4@Tfam!1.44!26.53!Tfam;;chr16:91270004..91270023,+!p1@Olig1!1.42!28.74!Olig1;;chr5:77543897..77543911,-!p2@Hopx!1.40!45.16!Hopx;;chr1:137155026..137155042,-!p1@Elf3!1.35!120.68!Elf3;;chr2:79296783..79296801,-!p1@Neurod1!1.35!21.43!Neurod1;;chr18:3299485..3299513,-!p12@Crem!1.35!21.35!Crem;;chr7:29552143..29552173,-!p4@Nfkbib!1.33!20.24!Nfkbib;;chr7:25655099..25655143,+!p1@Dmrtc2!1.32!19.99!Dmrtc2;;chr12:100009260..100009274,+!p3@Zc3h14!1.32!19.82!Zc3h14;;chr7:135020660..135020688,+!p3@Zfp646!1.31!26.70!Zfp646;;chr7:31383850..31383874,-!p1@Zbtb32!1.31!19.56!Zbtb32;;chr1:56694274..56694293,-!p2@Hsfy2!1.31!19.56!Hsfy2;;chr7:19953851..19953902,+!p4@Ppp1r13l!1.31!19.30!Ppp1r13l;;chr14:55489750..55489784,-!p2@Homez!1.30!19.13!Homez;;chr2:180377307..180377330,-!p2@Tcfl5!1.30!18.79!Tcfl5;;chr9:18282807..18282821,+!p1@Mbd3l1!1.28!18.11!Mbd3l1;;chr14:32979060..32979091,+!p4@Gm6768,p4@Ncoa4!1.28!17.94!Ncoa4;;chr10:88969376..88969395,-!p1@Nr1h4!1.27!17.60!Nr1h4;;chr4:118967319..118967330,-!p6@Ybx1!1.25!16.67!Ybx1;;chr10:5636354..5636373,-!p2@Esr1!1.24!16.33!Esr1;;chr6:52664044..52664072,+!p5@Tax1bp1!1.23!16.07!Tax1bp1;;chr11:87430678..87430702,+!p1@Hsf5!1.22!15.65!Hsf5;;chr14:32979026..32979042,+!p5@Gm6768,p5@Ncoa4!1.22!15.56!Ncoa4;;chr10:5636374..5636421,-!p1@Esr1!1.21!19.05!Esr1;;chr8:26950937..26950991,-!p3@Ash2l!1.21!17.94!Ash2l;;chr5:38611816..38611827,+!p4@Lyar!1.21!16.92!Lyar;;chr10:22539932..22539956,-!p1@Tcf21!1.20!39.55!Tcf21;;chr11:83664365..83664383,+!p1@Hnf1b!1.20!14.88!Hnf1b;;chr6:52859625..52859638,-!p3@Jazf1!1.20!14.71!Jazf1;;chr6:6832076..6832092,-!p1@Dlx5!1.19!16.75!Dlx5;;chr7:86937900..86937933,-!p@chr7:86937900..86937933,-!1.19!14.37!Mesp1;;chr5:138199361..138199441,+!p2@Tsc22d4!1.18!26.79!Tsc22d4;;chr2:24331085..24331100,-!p1@Pax8!1.18!14.29!Pax8;;chr11:116196698..116196713,-!p3@Foxj1!1.18!14.03!Foxj1;;chr3:90046478..90046489,-!p5@Creb3l4!1.17!13.69!Creb3l4;;chr10:67375368..67375433,-!p1@Zfp365!1.16!23.98!Zfp365;;chr11:52096066..52096081,-!p2@Tcf7!1.16!16.33!Tcf7;;chr6:52859575..52859603,-!p4@Jazf1!1.15!13.10!Jazf1;;chr17:56970481..56970551,-!p2@Rfx2!1.14!39.46!Rfx2;;chr3:95032515..95032553,-!p5@Mllt11!1.14!15.39!Mllt11;;chr9:18282826..18282845,+!p2@Mbd3l1!1.14!12.84!Mbd3l1;;chr1:42752574..42752621,+!p@chr1:42752574..42752621,+!1.13!15.73!Pou3f3;;chr11:116196714..116196729,-!p2@Foxj1!1.13!12.59!Foxj1;;chr11:87430653..87430666,+!p2@Hsf5!1.13!12.50!Hsf5;;chr8:123608252..123608268,+!p1@Foxf1a!1.12!18.20!Foxf1a;;chr4:61869708..61869732,-!p5@Zfp37!1.12!12.33!Zfp37;;chr8:26958093..26958148,-!p2@Ash2l!1.12!12.25!Ash2l;;chr11:69749491..69749502,+!p6@Ybx2!1.12!12.25!Ybx2;;chr17:15637108..15637147,+!p3@Tbp!1.12!12.08!Tbp;;chr17:87153240..87153254,+!p1@Epas1!1.11!231.66!Epas1;;chr6:55631042..55631102,-!p1@Neurod6!1.11!11.74!Neurod6;;chr5:134782473..134782486,-!p12@Gtf2i!1.11!11.74!Gtf2i;;chr10:22451660..22451678,-!p7@Tbpl1!1.10!11.65!Tbpl1;;chr1:39777834..39777860,-!p1@Rfx8!1.10!11.57!Rfx8;;chr4:117438155..117438175,-!p1@Klf17,p1@LOC100504967!1.10!11.48!Klf17;;chr7:31383882..31383903,-!p2@Zbtb32!1.09!11.40!Zbtb32;;chrX:83437105..83437121,+!p1@Nr0b1!1.09!11.31!Nr0b1;;chr11:87430728..87430749,+!p3@Hsf5!1.09!11.31!Hsf5;;chr15:100058744..100058772,+!p4@Gm1862,p6@Atf1!1.09!11.23!Atf1;;chr11:95170996..95171026,-!p3@Myst2!1.08!11.14!Myst2;;chr2:160685337..160685366,-!p5@Zhx3!1.07!10.72!Zhx3;;chr11:116196664..116196679,-!p1@Foxj1!1.06!16.24!Foxj1;;chr11:59319921..59319944,-!p5@Zkscan17!1.06!10.55!Zkscan17;;chr9:91260594..91260612,-!p1@Zic1!1.06!10.55!Zic1;;chr4:102815657..102815676,+!p16@Mier1!1.06!10.55!Mier1;;chr11:45793811..45793839,+!p1@Sox30!1.06!10.38!Sox30;;chr10:102491694..102491714,-!p3@Alx1!1.05!10.21!Alx1;;chr4:61869757..61869771,-!p6@Zfp37!1.05!10.21!Zfp37;;chr10:22451765..22451795,-!p6@Tbpl1!1.04!15.05!Tbpl1;;chr19:59533221..59533271,+!p1@Emx2!1.04!12.33!Emx2;;chr6:85463580..85463585,-!p1@Egr4!1.04!9.95!Egr4;;chr17:51971960..51971979,-!p1@Satb1!1.03!13.01!Satb1;;chrX:113562548..113562557,+!p2@Cpxcr1!1.03!9.78!Cpxcr1;;chr9:91260616..91260653,-!p2@Zic1!1.03!9.69!Zic1;;chr2:163372884..163372904,+!p1@Hnf4a!1.03!9.69!Hnf4a;;chr4:63042249..63042287,-!p10@Akna!1.03!9.61!Akna;;chr9:111020746..111020768,+!p5@Lrrfip2!1.03!9.61!Lrrfip2;;chr11:69749320..69749345,+!p2@Ybx2!1.02!15.73!Ybx2;;chr15:100410635..100410667,-!p4@Pou6f1!1.02!9.44!Pou6f1;;chr14:32979005..32979017,+!p7@Gm6768,p7@Ncoa4!1.02!9.35!Ncoa4;;chr7:88007115..88007129,+!p2@Zscan2!1.01!9.18!Zscan2;;chr1:52065106..52065124,+!p7@Stat4!1.01!9.18!Stat4;;chr2:27565816..27565828,+!p10@Rxra!1.00!9.10!Rxra;;chr6:52859553..52859568,-!p6@Jazf1!1.00!9.01!Jazf1;;chr8:72356384..72356434,+!p2@Pbx4!0.99!13.61!Pbx4;;chr13:96094769..96094829,+!p4@Zbed3!0.99!12.59!Zbed3;;chr11:96143666..96143725,+!p1@Hoxb8!0.99!10.04!Hoxb8;;chr4:61869681..61869704,-!p3@Zfp37!0.99!8.84!Zfp37;;chr11:34108085..34108092,-!p1@Foxi1!0.99!8.76!Foxi1;;chr11:85699862..85699920,+!p1@Tbx4!0.99!8.67!Tbx4;;chr1:56694252..56694259,-!p3@Hsfy2!0.98!8.59!Hsfy2;;chr2:180377331..180377344,-!p3@Tcfl5!0.98!8.59!Tcfl5;;chr8:72356532..72356611,+!p1@Pbx4!0.97!35.38!Pbx4;;chr14:69789996..69790021,+!p1@Nkx2-6!0.97!8.33!Nkx2-6;;chr9:8900459..8900489,+!p1@Pgr!0.97!8.25!Pgr;;chr1:120524520..120524528,+!p1@Tfcp2l1!0.96!24.24!Tfcp2l1;;chr5:136778385..136778407,-!p7@Cux1!0.96!8.08!Cux1;;chr11:98636531..98636559,-!p1@Nr1d1!0.95!46.26!Nr1d1;;chr10:84300848..84300879,+!p6@Rfx4!0.95!7.99!Rfx4;;chr12:86438030..86438041,-!p@chr12:86438030..86438041,-!0.95!7.91!Prox2;;chr19:19185671..19185693,-!p1@Rorb!0.94!18.96!Rorb;;chr16:3872378..3872411,-!p6@Zfp597!0.94!8.93!Zfp597;;chr12:81214217..81214219,-!p2@Zfp36l1!0.94!7.74!Zfp36l1;;chr10:84300905..84300919,+!p7@Rfx4!0.94!7.65!Rfx4;;chr4:61869733..61869751,-!p8@Zfp37!0.94!7.65!Zfp37;;chr2:74543397..74543435,+!p2@Hoxd8!0.94!7.65!Hoxd8;;chr2:38781916..38781974,-!p1@Nr6a1!0.93!23.56!Nr6a1;;chr16:55966407..55966447,+!p6@Rpl24,p6@Zbtb11!0.93!18.88!Zbtb11;;chr2:144157107..144157128,-!p3@Ovol2!0.93!7.57!Ovol2;;chr11:87430713..87430724,+!p4@Hsf5!0.93!7.57!Hsf5;;chr18:3309750..3309787,-!p21@Crem!0.93!7.48!Crem;;chr1:179374784..179374800,+!p2@Zfp238!0.92!8.59!Zfp238;;chr11:98190918..98190951,-!p1@Neurod2!0.92!7.40!Neurod2;;chr11:69749347..69749356,+!p8@Ybx2!0.92!7.23!Ybx2;;chr6:52190467..52190500,-!p1@Hoxa10!0.92!7.23!Hoxa10;;chr17:87153028..87153049,+!p2@Epas1!0.90!149.59!Epas1;;chr5:135582751..135582788,+!p1@Mlxipl!0.90!28.83!Mlxipl;;chr17:87153462..87153473,+!p3@Epas1!0.90!27.13!Epas1;;chr7:116154364..116154444,+!p1@Tub!0.90!12.16!Tub;;chr6:72850124..72850210,-!p7@Kcmf1!0.90!9.35!Kcmf1;;chr16:3872255..3872283,-!p4@Zfp597!0.89!10.04!Zfp597;;chr12:57636034..57636087,-!p1@Nkx2-1!0.89!6.80!Nkx2-1;;chr13:78164153..78164174,+!p1@Pou5f2!0.89!6.72!Pou5f2;;chr8:86590318..86590330,+!p3@Rfx1!0.89!6.72!Rfx1;;chr8:107033774..107033794,-!p1@Ccdc79!0.88!8.25!Ccdc79;;chr7:25655066..25655080,+!p2@Dmrtc2!0.88!6.63!Dmrtc2;;chr3:95032802..95032830,-!p7@Mllt11!0.88!6.63!Mllt11;;chr19:4989964..4989972,-!p1@Npas4!0.88!6.55!Npas4;;chr18:3337503..3337536,-!p7@Crem!0.87!11.48!Crem;;chr5:125342568..125342602,+!p2@Zfp664!0.87!10.72!Zfp664;;chr1:38721792..38721845,-!p1@Aff3!0.87!8.16!Aff3;;chr15:76353005..76353021,-!p2@Scrt1!0.87!6.38!Scrt1;;chr3:95032091..95032183,-!p1@Mllt11!0.86!57.23!Mllt11;;chr7:52960555..52960662,+!p1@Dbp!0.86!56.13!Dbp;;chr15:35225845..35225867,+!p1@Osr2!0.86!16.41!Osr2;;chr17:51971932..51971958,-!p2@Satb1!0.86!8.76!Satb1;;chr6:52195795..52195825,-!p1@Hoxa11!0.86!6.29!Hoxa11;;chr14:69790035..69790050,+!p2@Nkx2-6!0.86!6.21!Nkx2-6;;chr17:48015839..48015915,-!p3@Foxp4!0.85!7.31!Foxp4;;chr9:18282704..18282748,-!p3@Zfp558!0.85!6.04!Zfp558;;chr7:13420092..13420160,+!p2@Zfp110!0.84!11.65!Zfp110;;chr10:67375146..67375208,-!p2@Zfp365!0.84!9.44!Zfp365;;chr11:96143843..96143868,+!p3@Hoxb8!0.84!5.95!Hoxb8;;chr1:39777805..39777820,-!p2@Rfx8!0.84!5.95!Rfx8;;chr15:102828658..102828678,+!p1@Hoxc6!0.84!5.95!Hoxc6;;chr12:30219426..30219506,+!p2@Myt1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03!0.27!1.19!Zfp503;;chr12:39510042..39510069,+!p8@Etv1!0.27!0.85!Etv1;;chr12:39510260..39510271,+!p10@Etv1!0.27!0.85!Etv1;;chr15:76352832..76352900,-!p1@Scrt1!0.27!0.85!Scrt1;;chr11:52095797..52095809,-!p5@Tcf7!0.27!0.85!Tcf7;;chr11:90250999..90251013,-!p8@Hlf!0.27!0.85!Hlf;;chr16:43235969..43235989,+!p20@Zbtb20!0.27!0.85!Zbtb20;;chr15:95485240..95485257,-!p1@Dbx2!0.27!0.85!Dbx2;;chr6:38097421..38097440,-!p7@D630045J12Rik!0.27!0.85!D630045J12Rik;;chr6:52167434..52167450,-!p3@Hoxa7!0.27!0.85!Hoxa7;;chr5:122366729..122366766,-!p16@Cux2!0.27!0.85!Cux2;;chr5:140019843..140019858,+!p2@Uncx!0.27!0.85!Uncx;;chr6:88148324..88148328,+!p3@Gata2!0.27!0.85!Gata2;;chr5:77524175..77524186,-!p8@Hopx!0.27!0.85!Hopx;;chr6:144152648..144152680,-!p5@Sox5!0.27!0.85!Sox5;;chr8:87297330..87297365,-!p5@Nfix!0.27!0.85!Nfix;;chr9:98855944..98855971,+!p4@Foxl2!0.27!0.85!Foxl2;;chr3:3508005..3508021,+!p3@Hnf4g!0.27!0.85!Hnf4g;;chr5:106887474..106887489,-!p1@Barhl2!0.27!0.85!Barhl2;;chr4:6917763..6917782,-!p6@Tox!0.27!0.85!Tox;;chr4:135728311..135728342,+!p3@E2f2!0.27!0.85!E2f2;;chr1:135557400..135557421,-!p4@Zbed6!0.27!0.85!Zbed6;;chr2:169968173..169968178,-!p2@Zfp217!0.27!0.85!Zfp217;;chr19:6164433..6164446,+!p2@Batf2!0.27!0.85!Batf2;;chr2:104966662..104966673,+!p4@Wt1!0.27!0.85!Wt1;;chr6:35083688..35083730,-!p1@Cnot4!0.26!83.17!Cnot4;;chr16:15887371..15887385,+!p1@Cebpd!0.26!56.13!Cebpd;;chr7:35841486..35841575,-!p1@Cebpg!0.26!41.16!Cebpg;;chr16:22439681..22439698,-!p1@Etv5!0.26!28.15!Etv5;;chr5:145965392..145965443,+!p1@Zkscan5!0.26!14.29!Zkscan5;;chr6:86619104..86619119,-!p1@Mxd1!0.26!12.67!Mxd1;;chr7:71083428..71083518,-!p3@Klf13!0.26!11.99!Klf13;;chr14:98568761..98568814,-!p2@Dach1!0.26!10.72!Dach1;;chr10:30522690..30522752,-!p2@Ncoa7!0.26!9.27!Ncoa7;;chr5:120121020..120121049,+!p1@Tbx3!0.26!9.27!Tbx3;;chr4:120488308..120488366,-!p1@Nfyc!0.26!8.76!Nfyc;;chr5:104121453..104121479,+!p4@Aff1!0.26!6.89!Aff1;;chr8:112603610..112603656,+!p1@Zfp612!0.26!6.80!Zfp612;;chr14:18493386..18493464,+!p1@Thrb!0.26!5.53!Thrb;;chr15:50721515..50721540,-!p3@Trps1!0.26!4.08!Trps1;;chr16:42907554..42907591,+!p5@Zbtb20!0.26!3.40!Zbtb20;;chr2:165818108..165818119,+!p2@Ncoa3!0.26!3.40!Ncoa3;;chr2:128793085..128793116,+!p2@Zc3h6!0.26!3.23!Zc3h6;;chr13:99954688..99954710,+!p2@Zfp366!0.26!2.38!Zfp366;;chr7:25862363..25862382,+!p2@Zfp574!0.26!2.21!Zfp574;;chr4:119486912..119486954,+!p3@Hivep3!0.26!2.04!Hivep3;;chr4:135129538..135129558,-!p1@Grhl3!0.26!1.70!Grhl3;;chr8:124984566..124984595,-!p1@Snai3!0.26!1.70!Snai3;;chr1:133904946..133904974,+!p7@Elk4!0.26!1.70!Elk4;;chr19:23215554..23215567,+!p5@Klf9!0.26!1.45!Klf9;;chr5:107003725..107003746,-!p5@Zfp644!0.26!1.36!Zfp644;;chr6:72185179..72185196,-!p4@Atoh8!0.26!1.36!Atoh8;;chr18:36441100..36441113,+!p3@Pura!0.26!1.11!Pura;;chr8:94881872..94881887,+!p2@Irx5!0.26!0.94!Irx5;;chr8:74842952..74842970,+!p1@Klf2!0.25!108.09!Klf2;;chr5:21290933..21291050,-!p1@Dnajc2!0.25!59.70!Dnajc2;;chr19:5424906..5425026,-!p1@Drap1!0.25!43.12!Drap1;;chr17:25325325..25325363,+!p1@Unkl!0.25!11.40!Unkl;;chr1:138521528..138521572,+!p1@Zfp281!0.25!8.84!Zfp281;;chr11:62602904..62602945,-!p1@Zfp286!0.25!6.72!Zfp286;;chr9:63869850..63869873,-!p2@Smad6!0.25!4.00!Smad6;;chr19:28086084..28086124,-!p6@Rfx3!0.25!3.74!Rfx3;;chr6:92042363..92042413,+!p3@Nr2c2!0.25!3.15!Nr2c2;;chr10:127896024..127896045,+!p3@Smarcc2!0.25!3.15!Smarcc2;;chr11:70501599..70501634,-!p2@Camta2,p2@LOC100048818!0.25!2.55!Camta2;;chr16:43619057..43619078,+!p8@Zbtb20!0.25!2.55!Zbtb20;;chr11:3189171..3189197,+!p4@Patz1!0.25!2.30!Patz1;;chr9:96653241..96653288,-!p1@E030011O05Rik,p5@Zbtb38!0.25!2.21!Zbtb38;;chr16:92697354..92697362,-!p3@Runx1!0.25!1.70!Runx1;;chr17:46520492..46520515,+!p4@Zfp318!0.25!1.53!Zfp318;;chr11:11585678..11585745,+!p5@Ikzf1!0.25!1.53!Ikzf1;; | ||
Line 44: | Line 44: | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs10609 | |library_id=CNhs10609 | ||
|library_id_phase_based= | |library_id_phase_based=2:CNhs10609 | ||
|name=Clontech Mouse Universal Reference Total RNA, pool1 | |name=Clontech Mouse Universal Reference Total RNA, pool1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 50: | Line 50: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs10609,LSID656,release008,COMPLETED | |profile_hcage=CNhs10609,LSID656,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|repeat_enrich_byfamily=0.069205145037417,0.0354470656487682,0.0354470656487682,0,0,0,0.0504626559930959,0,0.016237489816948,0,0,-0.0488921747477733,0.0354470656487682,0,0,0.00287740603387638,0.702808184796584,0,-0.191893350882575,0.63515069179384,0.271052175481388,0,0,0.0354470656487682,0.0682179984609265,0,0.0354470656487682,0.225398799517185,0.0354470656487682,0.560664721474883,0.0643254229730425,0,0.101666158568684,0,1.16202293741674,0.857824429048094,0.225398799517185,0.0976929398174453,0.114582340120523,0.0816303225171042,-0.0126440854624756,0.154296381533113,0.103170808453595,0,0.0193162580719021,0,0,0,0,0,1.40350453859856,0.0354470656487682,0,0,0,-0.0660055475634404,0,0.0447967875023084,0.0986886653414259,0,0,0.225398799517185,0.116039962118659,0,0,0.0682179984609265,-0.0153287736277385,-0.24243265887846,0.0209606027615347,0.0566897580132885,0.0682179984609265,0.00136383404063634,0.118237743236505,0.344087628424147,0.0986886653414259,0.0177235328243841,0.0711649501513594,0.0592071260626978,-0.0153971957720909,0.0750492317713172,0.112665567774263,0.958043400587127,0.0392314187828934,0.268244893206496,0,0,0.0442660955387016,-0.10041981211551,-0.0534910230255868,0.0354470656487682,0,0.0986886653414259,0,0.0168712480857752 | |repeat_enrich_byfamily=0.069205145037417,0.0354470656487682,0.0354470656487682,0,0,0,0.0504626559930959,0,0.016237489816948,0,0,-0.0488921747477733,0.0354470656487682,0,0,0.00287740603387638,0.702808184796584,0,-0.191893350882575,0.63515069179384,0.271052175481388,0,0,0.0354470656487682,0.0682179984609265,0,0.0354470656487682,0.225398799517185,0.0354470656487682,0.560664721474883,0.0643254229730425,0,0.101666158568684,0,1.16202293741674,0.857824429048094,0.225398799517185,0.0976929398174453,0.114582340120523,0.0816303225171042,-0.0126440854624756,0.154296381533113,0.103170808453595,0,0.0193162580719021,0,0,0,0,0,1.40350453859856,0.0354470656487682,0,0,0,-0.0660055475634404,0,0.0447967875023084,0.0986886653414259,0,0,0.225398799517185,0.116039962118659,0,0,0.0682179984609265,-0.0153287736277385,-0.24243265887846,0.0209606027615347,0.0566897580132885,0.0682179984609265,0.00136383404063634,0.118237743236505,0.344087628424147,0.0986886653414259,0.0177235328243841,0.0711649501513594,0.0592071260626978,-0.0153971957720909,0.0750492317713172,0.112665567774263,0.958043400587127,0.0392314187828934,0.268244893206496,0,0,0.0442660955387016,-0.10041981211551,-0.0534910230255868,0.0354470656487682,0,0.0986886653414259,0,0.0168712480857752 |
Revision as of 09:32, 28 November 2014
Name: | Clontech Mouse Universal Reference Total RNA, pool1 |
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Species: | Mouse (Mus musculus) |
Library ID: | CNhs10609 |
Sample type: | tissues |
Genomic View: | UCSC |
CAGEd-oPOSSUM: | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
CNhs10609
0 | 0.715 |
1 | 0.323 |
10 | 0 |
100 | 0 |
1000 | 0.0652 |
1001 | 0.0244 |
1002 | -0.0343 |
1003 | -0.00177 |
1004 | 0.236 |
1005 | 0.0354 |
1006 | 0.259 |
1007 | 0.0894 |
1008 | 0 |
1009 | 0.168 |
101 | -0.0613 |
1010 | 0.0354 |
1011 | 0.692 |
1012 | 0.0682 |
1013 | 0.0807 |
1014 | -0.0851 |
1015 | 0.122 |
1016 | -0.0769 |
1017 | 0 |
1018 | 0.0682 |
1019 | 0.0354 |
102 | 0 |
1020 | 0 |
1021 | 0 |
1022 | 0.217 |
1023 | 0 |
1024 | 0.233 |
1025 | 0.373 |
1026 | 0.581 |
1027 | 0.131 |
1028 | 0.0354 |
1029 | -0.0307 |
103 | 0.00251 |
1030 | 0 |
1031 | -0.0963 |
1032 | 0.053 |
1033 | 0.0322 |
1034 | 0.125 |
1035 | 0.247 |
1036 | -0.238 |
1037 | 0 |
1038 | 0.0329 |
1039 | 0.179 |
104 | 0 |
1040 | 0.082 |
1041 | 0.225 |
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10609
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs10609
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.915 |
10 | 10 | 0.389 |
100 | 100 | 0.308 |
101 | 101 | 0.3 |
102 | 102 | 0.353 |
103 | 103 | 0.547 |
104 | 104 | 0.899 |
105 | 105 | 0.929 |
106 | 106 | 0.00252 |
107 | 107 | 0.0468 |
108 | 108 | 0.449 |
109 | 109 | 0.947 |
11 | 11 | 0.656 |
110 | 110 | 0.689 |
111 | 111 | 0.862 |
112 | 112 | 0.497 |
113 | 113 | 0.856 |
114 | 114 | 0.395 |
115 | 115 | 0.904 |
116 | 116 | 0.917 |
117 | 117 | 0.514 |
118 | 118 | 0.551 |
119 | 119 | 0.667 |
12 | 12 | 0.867 |
120 | 120 | 0.657 |
121 | 121 | 0.0271 |
122 | 122 | 0.615 |
123 | 123 | 0.371 |
124 | 124 | 0.855 |
125 | 125 | 0.735 |
126 | 126 | 0.924 |
127 | 127 | 0.202 |
128 | 128 | 0.0167 |
129 | 129 | 0.444 |
13 | 13 | 0.00371 |
130 | 130 | 0.934 |
131 | 131 | 0.824 |
132 | 132 | 0.683 |
133 | 133 | 0.423 |
134 | 134 | 0.969 |
135 | 135 | 0.1 |
136 | 136 | 0.00394 |
137 | 137 | 0.385 |
138 | 138 | 0.989 |
139 | 139 | 0.333 |
14 | 14 | 0.649 |
140 | 140 | 0.064 |
141 | 141 | 0.142 |
142 | 142 | 0.727 |
143 | 143 | 0.529 |
144 | 144 | 0.27 |
145 | 145 | 0.834 |
146 | 146 | 0.199 |
147 | 147 | 0.368 |
148 | 148 | 0.298 |
149 | 149 | 0.389 |
15 | 15 | 0.671 |
150 | 150 | 0.803 |
151 | 151 | 0.372 |
152 | 152 | 0.521 |
153 | 153 | 0.806 |
154 | 154 | 0.315 |
155 | 155 | 0.462 |
156 | 156 | 1.84924e-5 |
157 | 157 | 0.987 |
158 | 158 | 1.38689e-5 |
159 | 159 | 0.0548 |
160 | 160 | 0.0135 |
161 | 161 | 0.23 |
162 | 162 | 0.48 |
163 | 163 | 0.733 |
164 | 164 | 0.49 |
165 | 165 | 0.477 |
166 | 166 | 0.471 |
167 | 167 | 0.639 |
168 | 168 | 0.791 |
169 | 169 | 0.543 |
17 | 17 | 0.49 |
18 | 18 | 0.473 |
19 | 19 | 0.426 |
2 | 2 | 0.074 |
20 | 20 | 0.275 |
21 | 21 | 0.531 |
22 | 22 | 0.949 |
23 | 23 | 0.499 |
24 | 24 | 0.0694 |
25 | 25 | 0.438 |
26 | 26 | 0.0485 |
27 | 27 | 0.0435 |
28 | 28 | 0.459 |
29 | 29 | 0.848 |
3 | 3 | 0.322 |
30 | 30 | 0.825 |
31 | 31 | 0.414 |
32 | 32 | 0.737 |
33 | 33 | 0.618 |
34 | 34 | 0.225 |
35 | 35 | 0.665 |
36 | 36 | 0.335 |
37 | 37 | 0.0688 |
38 | 38 | 0.73 |
39 | 39 | 0.497 |
4 | 4 | 0.992 |
40 | 40 | 0.0822 |
41 | 41 | 5.29361e-4 |
42 | 42 | 0.497 |
43 | 43 | 0.29 |
44 | 44 | 0.767 |
45 | 45 | 0.734 |
46 | 46 | 0.312 |
47 | 47 | 0.0627 |
48 | 48 | 0.245 |
49 | 49 | 0.815 |
5 | 5 | 0.347 |
50 | 50 | 0.578 |
51 | 51 | 0.656 |
52 | 52 | 0.662 |
53 | 53 | 0.983 |
54 | 54 | 0.489 |
55 | 55 | 0.807 |
56 | 56 | 0.157 |
57 | 57 | 0.48 |
58 | 58 | 0.402 |
59 | 59 | 0.5 |
6 | 6 | 0.756 |
60 | 60 | 0.347 |
61 | 61 | 0.345 |
62 | 62 | 0.6 |
63 | 63 | 0.578 |
64 | 64 | 0.691 |
65 | 65 | 0.527 |
66 | 66 | 0.152 |
67 | 67 | 0.257 |
68 | 68 | 0.785 |
69 | 69 | 0.425 |
7 | 7 | 0.442 |
70 | 70 | 0.814 |
71 | 71 | 0.00348 |
72 | 72 | 0.329 |
73 | 73 | 0.243 |
74 | 74 | 0.786 |
75 | 75 | 0.17 |
76 | 76 | 0.4 |
77 | 77 | 0.748 |
78 | 78 | 2.14088e-6 |
79 | 79 | 0.963 |
8 | 8 | 0.016 |
80 | 80 | 0.533 |
81 | 81 | 0.301 |
82 | 82 | 0.916 |
83 | 83 | 0.658 |
84 | 84 | 0.682 |
85 | 85 | 0.891 |
86 | 86 | 0.287 |
87 | 87 | 0.00114 |
88 | 88 | 0.282 |
89 | 89 | 0.874 |
9 | 9 | 0.971 |
90 | 90 | 0.629 |
91 | 91 | 0.52 |
92 | 92 | 0.518 |
93 | 93 | 0.683 |
94 | 94 | 0.418 |
95 | 95 | 0.9 |
96 | 96 | 0.774 |
97 | 97 | 0.154 |
98 | 98 | 0.956 |
99 | 99 | 0.912 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs10609
FANTOM5 (FF) ontology
Direct parent terms
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
FF: FANTOM5
0000102 (sample by type)
0000101 (sample by species)
0000103 (mouse sample)
0000001 (sample)
0000004 (tissue sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA