Personal tools

CL:0000541: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 13: Line 13:
|located_in=
|located_in=
|name=melanoblast
|name=melanoblast
|namespace=cell
|namespace=FANTOM
|obo_creation_date=
|obo_creation_date=
|part_of=
|part_of=

Latest revision as of 16:34, 12 September 2014

Name:melanoblast
Namespace:FANTOM
Definition:"A cell that originates from the neural crest and differentiates into a pigment cell." [GOC:tfm, SANBI:mhl]
Xrefs:
links:

BTO:0003217

FMA:83377
Comments:Derived from UBERON:0002342 neural crest.


Ontology association <br>Each term has an is_a parent in the Cell ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to Cell ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:CL:0000055(non-terminally differentiated cell),CL:0000710(neurecto-epithelial cell)
develops_from:CL:0000333(migratory neural crest cell)



Children


develops from:CL:0000148 (melanocyte)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)


FF samples<br>It includes FANTOM5 samples that overlay the Cell ontology.

Human (Homo sapiens)

Mouse (Mus musculus)


Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with CL:0000541 (melanoblast), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.89e-139FFCP PHASE1:Hg19::chrX:9707625..9707629,-#_865a8d92404f9d2fd116626c4434d80cp6@GPR143
3.89e-139FFCP PHASE2:Hg19::chrX:9707625..9707629,-#_865a8d92404f9d2fd116626c4434d80cp6@GPR143
5.38e-137FFCP PHASE1:Hg19::chr9:12709332..12709345,+#_94ba3276404c7f5c64eacce1daff1aeap@chr9:12709332..12709345, +
5.38e-137FFCP PHASE2:Hg19::chr9:12709332..12709345,+#_94ba3276404c7f5c64eacce1daff1aeap@chr9:12709332..12709345, +
5.38e-137FFCP PHASE1:Hg19::chr9:12708060..12708071,-#_94ba3276404c7f5c64eacce1daff1aeap@chr9:12708060..12708071, -
5.38e-137FFCP PHASE2:Hg19::chr9:12708060..12708071,-#_94ba3276404c7f5c64eacce1daff1aeap@chr9:12708060..12708071, -
5.38e-137FFCP PHASE1:Hg19::chr9:12702367..12702377,+#_94ba3276404c7f5c64eacce1daff1aeap@chr9:12702367..12702377, +
5.38e-137FFCP PHASE2:Hg19::chr9:12702367..12702377,+#_94ba3276404c7f5c64eacce1daff1aeap@chr9:12702367..12702377, +
5.38e-137FFCP PHASE1:Hg19::chr9:12693291..12693298,+#_94ba3276404c7f5c64eacce1daff1aeap33@TYRP1
5.38e-137FFCP PHASE1:Hg19::chr1:1497497..1497523,-#_94ba3276404c7f5c64eacce1daff1aeap1@AK129493
5.38e-137FFCP PHASE2:Hg19::chr9:12693291..12693298,+#_94ba3276404c7f5c64eacce1daff1aeap33@TYRP1
5.38e-137FFCP PHASE2:Hg19::chr1:1497497..1497523,-#_94ba3276404c7f5c64eacce1daff1aeap1@AK129493
5.38e-137FFCP PHASE1:Hg19::chr16:89986251..89986268,+#_94ba3276404c7f5c64eacce1daff1aeap@chr16:89986251..89986268, +
5.38e-137FFCP PHASE2:Hg19::chr16:89986251..89986268,+#_94ba3276404c7f5c64eacce1daff1aeap@chr16:89986251..89986268, +
5.38e-137FFCP PHASE1:Hg19::chr9:12708978..12708990,+#_94ba3276404c7f5c64eacce1daff1aeap@chr9:12708978..12708990, +
5.38e-137FFCP PHASE2:Hg19::chr9:12708978..12708990,+#_94ba3276404c7f5c64eacce1daff1aeap@chr9:12708978..12708990, +
5.38e-137FFCP PHASE1:Hg19::chr1:154401791..154401807,+#_94ba3276404c7f5c64eacce1daff1aeap11@IL6R
5.38e-137FFCP PHASE1:Hg19::chr9:12695585..12695593,+#_94ba3276404c7f5c64eacce1daff1aeap24@TYRP1
5.38e-137FFCP PHASE2:Hg19::chr1:154401791..154401807,+#_94ba3276404c7f5c64eacce1daff1aeap11@IL6R
5.38e-137FFCP PHASE2:Hg19::chr9:12695585..12695593,+#_94ba3276404c7f5c64eacce1daff1aeap24@TYRP1
5.38e-137FFCP PHASE1:Hg19::chr19:3557867..3557877,-#_94ba3276404c7f5c64eacce1daff1aeap7@MFSD12
5.38e-137FFCP PHASE2:Hg19::chr19:3557867..3557877,-#_94ba3276404c7f5c64eacce1daff1aeap7@MFSD12
5.38e-137FFCP PHASE1:Hg19::chr6:4610902..4610913,+#_94ba3276404c7f5c64eacce1daff1aeap1@ENST00000380106
5.38e-137FFCP PHASE2:Hg19::chr6:4610902..4610913,+#_94ba3276404c7f5c64eacce1daff1aeap1@ENST00000380106
3.56e-120FFCP PHASE1:Hg19::chr19:3557918..3557927,-#_5dd959a93d153f3eb337d3041dc1e163p8@MFSD12
3.56e-120FFCP PHASE2:Hg19::chr19:3557918..3557927,-#_5dd959a93d153f3eb337d3041dc1e163p8@MFSD12
3.56e-120FFCP PHASE1:Hg19::chr1:1497528..1497559,-#_5dd959a93d153f3eb337d3041dc1e163p2@AK129493
3.56e-120FFCP PHASE2:Hg19::chr1:1497528..1497559,-#_5dd959a93d153f3eb337d3041dc1e163p2@AK129493
4.24e-120FFCP PHASE1:Hg19::chr5:159894810..159894819,+#_8b3764f035f8dc96de6958441a4d52bfp12@uc003lyl.3
4.24e-120FFCP PHASE1:Hg19::chr9:12701182..12701196,+#_8b3764f035f8dc96de6958441a4d52bfp19@TYRP1
4.24e-120FFCP PHASE2:Hg19::chr9:12701182..12701196,+#_8b3764f035f8dc96de6958441a4d52bfp19@TYRP1
4.24e-120FFCP PHASE1:Hg19::chr9:12693559..12693562,+#_8b3764f035f8dc96de6958441a4d52bfp22@TYRP1
4.24e-120FFCP PHASE2:Hg19::chr9:12693559..12693562,+#_8b3764f035f8dc96de6958441a4d52bfp22@TYRP1
4.24e-120FFCP PHASE1:Hg19::chr9:12704349..12704362,+#_8b3764f035f8dc96de6958441a4d52bfp@chr9:12704349..12704362, +
4.24e-120FFCP PHASE2:Hg19::chr5:159894810..159894819,+#_8b3764f035f8dc96de6958441a4d52bfp12@uc003lyl.3
4.24e-120FFCP PHASE2:Hg19::chr9:12704349..12704362,+#_8b3764f035f8dc96de6958441a4d52bfp@chr9:12704349..12704362, +
4.24e-120FFCP PHASE1:Hg19::chr9:12708011..12708027,+#_8b3764f035f8dc96de6958441a4d52bfp27@TYRP1
4.24e-120FFCP PHASE2:Hg19::chr9:12708011..12708027,+#_8b3764f035f8dc96de6958441a4d52bfp27@TYRP1
5.06e-120FFCP PHASE1:Hg19::chr15:28344426..28344431,-#_8e7b9a18b8f6f02cd4053f5bef809b15p2@OCA2
5.06e-120FFCP PHASE1:Hg19::chr9:12704539..12704547,+#_8e7b9a18b8f6f02cd4053f5bef809b15p@chr9:12704539..12704547, +
5.06e-120FFCP PHASE2:Hg19::chr9:12704539..12704547,+#_8e7b9a18b8f6f02cd4053f5bef809b15p@chr9:12704539..12704547, +
5.06e-120FFCP PHASE2:Hg19::chr15:28344426..28344431,-#_8e7b9a18b8f6f02cd4053f5bef809b15p2@OCA2
6.04e-120FFCP PHASE1:Hg19::chr9:12695674..12695681,+#_e1672fe1789bc18c17ac0c08f7583bbep36@TYRP1
6.04e-120FFCP PHASE2:Hg19::chr9:12695674..12695681,+#_e1672fe1789bc18c17ac0c08f7583bbep36@TYRP1
7.21e-120FFCP PHASE1:Hg19::chr12:56351078..56351092,-#_009edf9f1e74e27593f2a6dfe4395212p@chr12:56351078..56351092, -
7.21e-120FFCP PHASE2:Hg19::chr12:56351078..56351092,-#_009edf9f1e74e27593f2a6dfe4395212p@chr12:56351078..56351092, -
1.29e-117FFCP PHASE2:Hg19::chr1:212594718..212594723,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr1:212594718..212594723, +
1.29e-117FFCP PHASE1:Hg19::chr22:20878094..20878105,+#_4b09a31dd9030735c5f05f90460f8fa6p41@MED15
1.29e-117FFCP PHASE2:Hg19::chr22:20878094..20878105,+#_4b09a31dd9030735c5f05f90460f8fa6p41@MED15
1.29e-117FFCP PHASE2:Hg19::chr2:128400821..128400830,-#_4b09a31dd9030735c5f05f90460f8fa6p39@LIMS2
1.29e-117FFCP PHASE1:Hg19::chr9:12709019..12709029,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr9:12709019..12709029, +
1.29e-117FFCP PHASE2:Hg19::chr9:12709019..12709029,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr9:12709019..12709029, +
1.29e-117FFCP PHASE1:Hg19::chr3:69951861..69951868,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr3:69951861..69951868, +
1.29e-117FFCP PHASE1:Hg19::chr17:77923816..77923828,-#_4b09a31dd9030735c5f05f90460f8fa6p@chr17:77923816..77923828, -
1.29e-117FFCP PHASE2:Hg19::chr17:77923816..77923828,-#_4b09a31dd9030735c5f05f90460f8fa6p@chr17:77923816..77923828, -
1.29e-117FFCP PHASE1:Hg19::chr1:1497446..1497455,-#_4b09a31dd9030735c5f05f90460f8fa6p4@AK129493
1.29e-117FFCP PHASE2:Hg19::chr1:1497446..1497455,-#_4b09a31dd9030735c5f05f90460f8fa6p4@AK129493
1.29e-117FFCP PHASE1:Hg19::chr2:128400821..128400830,-#_4b09a31dd9030735c5f05f90460f8fa6p39@LIMS2
1.29e-117FFCP PHASE1:Hg19::chr19:3557800..3557811,-#_4b09a31dd9030735c5f05f90460f8fa6p9@MFSD12
1.29e-117FFCP PHASE2:Hg19::chr19:3557800..3557811,-#_4b09a31dd9030735c5f05f90460f8fa6p9@MFSD12
1.29e-117FFCP PHASE2:Hg19::chr11:48066945..48066951,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr11:48066945..48066951, +
1.29e-117FFCP PHASE2:Hg19::chr15:28360793..28360804,-#_4b09a31dd9030735c5f05f90460f8fa6p@chr15:28360793..28360804, -
1.29e-117FFCP PHASE2:Hg19::chr11:2920857..2920864,+#_4b09a31dd9030735c5f05f90460f8fa6p13@SLC22A18
1.29e-117FFCP PHASE1:Hg19::chr11:48066945..48066951,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr11:48066945..48066951, +
1.29e-117FFCP PHASE1:Hg19::chr9:12704666..12704671,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr9:12704666..12704671, +
1.29e-117FFCP PHASE1:Hg19::chr11:2920857..2920864,+#_4b09a31dd9030735c5f05f90460f8fa6p13@SLC22A18
1.29e-117FFCP PHASE2:Hg19::chr9:12704666..12704671,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr9:12704666..12704671, +
1.29e-117FFCP PHASE1:Hg19::chr9:12701691..12701717,+#_4b09a31dd9030735c5f05f90460f8fa6p34@TYRP1
1.29e-117FFCP PHASE2:Hg19::chr9:12701691..12701717,+#_4b09a31dd9030735c5f05f90460f8fa6p34@TYRP1
1.29e-117FFCP PHASE2:Hg19::chr15:28360857..28360860,-#_4b09a31dd9030735c5f05f90460f8fa6p@chr15:28360857..28360860, -
1.29e-117FFCP PHASE1:Hg19::chr15:28360793..28360804,-#_4b09a31dd9030735c5f05f90460f8fa6p@chr15:28360793..28360804, -
1.29e-117FFCP PHASE2:Hg19::chr15:42694665..42694671,+#_4b09a31dd9030735c5f05f90460f8fa6p16@CAPN3
1.29e-117FFCP PHASE1:Hg19::chr6:4610888..4610895,+#_4b09a31dd9030735c5f05f90460f8fa6p2@ENST00000380106
1.29e-117FFCP PHASE2:Hg19::chr6:4610888..4610895,+#_4b09a31dd9030735c5f05f90460f8fa6p2@ENST00000380106
1.29e-117FFCP PHASE1:Hg19::chr9:12709200..12709209,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr9:12709200..12709209, +
1.29e-117FFCP PHASE2:Hg19::chr9:12709200..12709209,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr9:12709200..12709209, +
1.29e-117FFCP PHASE2:Hg19::chr3:69951861..69951868,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr3:69951861..69951868, +
1.29e-117FFCP PHASE1:Hg19::chr1:1497566..1497576,-#_4b09a31dd9030735c5f05f90460f8fa6p3@AK129493
1.29e-117FFCP PHASE2:Hg19::chr1:1497566..1497576,-#_4b09a31dd9030735c5f05f90460f8fa6p3@AK129493
1.29e-117FFCP PHASE1:Hg19::chr15:28360857..28360860,-#_4b09a31dd9030735c5f05f90460f8fa6p@chr15:28360857..28360860, -
1.29e-117FFCP PHASE1:Hg19::chr17:77925869..77925876,-#_4b09a31dd9030735c5f05f90460f8fa6p@chr17:77925869..77925876, -
1.29e-117FFCP PHASE1:Hg19::chr15:42694665..42694671,+#_4b09a31dd9030735c5f05f90460f8fa6p16@CAPN3
1.29e-117FFCP PHASE2:Hg19::chr17:77925869..77925876,-#_4b09a31dd9030735c5f05f90460f8fa6p@chr17:77925869..77925876, -
1.29e-117FFCP PHASE1:Hg19::chr1:212594718..212594723,+#_4b09a31dd9030735c5f05f90460f8fa6p@chr1:212594718..212594723, +
4.33e-107FFCP PHASE1:Hg19::chr9:5892516..5892527,+#_63da569741197e1ea7474c802d866c4dp3@MLANA
4.33e-107FFCP PHASE2:Hg19::chr9:12694022..12694033,+#_63da569741197e1ea7474c802d866c4dp15@TYRP1
4.33e-107FFCP PHASE2:Hg19::chr9:5892516..5892527,+#_63da569741197e1ea7474c802d866c4dp3@MLANA
4.33e-107FFCP PHASE1:Hg19::chr9:12702379..12702409,+#_63da569741197e1ea7474c802d866c4dp@chr9:12702379..12702409, +
4.33e-107FFCP PHASE2:Hg19::chr9:12702379..12702409,+#_63da569741197e1ea7474c802d866c4dp@chr9:12702379..12702409, +
4.33e-107FFCP PHASE1:Hg19::chr22:20878024..20878053,+#_63da569741197e1ea7474c802d866c4dp16@MED15
4.33e-107FFCP PHASE2:Hg19::chr22:20878024..20878053,+#_63da569741197e1ea7474c802d866c4dp16@MED15
4.33e-107FFCP PHASE1:Hg19::chr17:77924675..77924686,-#_63da569741197e1ea7474c802d866c4dp3@TBC1D16
4.33e-107FFCP PHASE2:Hg19::chr17:77924675..77924686,-#_63da569741197e1ea7474c802d866c4dp3@TBC1D16
4.33e-107FFCP PHASE1:Hg19::chr9:12694022..12694033,+#_63da569741197e1ea7474c802d866c4dp15@TYRP1
4.33e-107FFCP PHASE1:Hg19::chr9:12702314..12702344,+#_63da569741197e1ea7474c802d866c4dp@chr9:12702314..12702344, +
4.33e-107FFCP PHASE2:Hg19::chr9:12702314..12702344,+#_63da569741197e1ea7474c802d866c4dp@chr9:12702314..12702344, +
4.33e-107FFCP PHASE1:Hg19::chr9:12698593..12698608,+#_63da569741197e1ea7474c802d866c4dp20@TYRP1
4.33e-107FFCP PHASE2:Hg19::chr9:12698593..12698608,+#_63da569741197e1ea7474c802d866c4dp20@TYRP1
5.07e-107FFCP PHASE1:Hg19::chr9:5897549..5897564,+#_344e1002ebaf4321c8a89dbde18064a2p4@MLANA
5.07e-107FFCP PHASE2:Hg19::chr9:5897549..5897564,+#_344e1002ebaf4321c8a89dbde18064a2p4@MLANA

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=CL:0000541&oldid=3275294"