UBERON:0000353: Difference between revisions
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|located_in= | |located_in= | ||
|name=parenchyma | |name=parenchyma | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of= | |part_of= | ||
Latest revision as of 17:08, 12 September 2014
| Name: | parenchyma | ||
|---|---|---|---|
| Namespace: | FANTOM | ||
| Definition: | "functional part of an organ in the body. This is in contrast to the stroma, which refers to the structural tissue of organs, being exactly, connective tissues. Early in development the mammalian embryo has three distinct layers: ectoderm (external layer), endoderm (internal layer) and in between those two layers the middle layer or mesoderm. The parenchyma of most organs is of ectodermal (brain, skin) or endodermal origin (lungs, gastrointestinal tract, liver, pancreas). The parenchyma of a few organs (spleen, kidneys, heart) is of mesodermal origin. The stroma of all organs is of mesodermal origin[WP]." [Wikipedia:Parenchyma] | ||
| Xrefs: |
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| Alt_id: | UBERON:BTO_0000999-FMA_45732 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000064(organ part) |
|---|
Children
| is a: | UBERON:0001280 (liver parenchyma),UBERON:0008987 (renal parenchyma) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
- 10629-108H8
- 10630-108H9
- 11514-119H2 (Renal Glomerular Endothelial Cells, donor1)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
- 11590-120G6 (Alveolar Epithelial Cells, donor2)
- 11594-120H1 (Renal Glomerular Endothelial Cells, donor2)
... further results Mouse (Mus musculus)
- 10536-107G5 (cholangiocellular carcinoma cell line:HuH-28)
- 10629-108H8
- 10630-108H9
- 11514-119H2 (Renal Glomerular Endothelial Cells, donor1)
- 11515-119H3 (Renal Proximal Tubular Epithelial Cell, donor1)
- 11516-119H4 (Renal Cortical Epithelial Cells, donor1)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11521-119H9 (Hepatic Sinusoidal Endothelial Cells, donor1)
- 11590-120G6 (Alveolar Epithelial Cells, donor2)
- 11594-120H1 (Renal Glomerular Endothelial Cells, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000353 (parenchyma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:173044327..173044331,+#_986f5708225d9b91a75c567d6eeb21da | p@chr1:173044327..173044331, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:8928284..8928331,+#_986f5708225d9b91a75c567d6eeb21da | p@chr14:8928284..8928331, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:68437375..68437378,+#_986f5708225d9b91a75c567d6eeb21da | p@chr11:68437375..68437378, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:118287827..118287833,-#_986f5708225d9b91a75c567d6eeb21da | p@chr11:118287827..118287833, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:86335502..86335509,+#_986f5708225d9b91a75c567d6eeb21da | p@chr4:86335502..86335509, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:8471698..8471701,+#_986f5708225d9b91a75c567d6eeb21da | p@chr10:8471698..8471701, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:84756280..84756286,+#_986f5708225d9b91a75c567d6eeb21da | p@chr2:84756280..84756286, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:39513150..39513152,+#_986f5708225d9b91a75c567d6eeb21da | p@chr18:39513150..39513152, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:48822294..48822295,-#_986f5708225d9b91a75c567d6eeb21da | p@chr17:48822294..48822295, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:28107053..28107062,-#_986f5708225d9b91a75c567d6eeb21da | p@chr17:28107053..28107062, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:186559285..186559288,+#_986f5708225d9b91a75c567d6eeb21da | p@chr1:186559285..186559288, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:85585949..85585969,-#_986f5708225d9b91a75c567d6eeb21da | p@chr10:85585949..85585969, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr4:43407825..43407830,+#_986f5708225d9b91a75c567d6eeb21da | p@chr4:43407825..43407830, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:42915220..42915225,-#_986f5708225d9b91a75c567d6eeb21da | p@chr9:42915220..42915225, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:3311867..3311873,+#_986f5708225d9b91a75c567d6eeb21da | p@chr8:3311867..3311873, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:66883923..66883955,-#_986f5708225d9b91a75c567d6eeb21da | p@chr1:66883923..66883955, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:32178407..32178408,-#_986f5708225d9b91a75c567d6eeb21da | p@chr15:32178407..32178408, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:12388232..12388237,+#_986f5708225d9b91a75c567d6eeb21da | p@chr17:12388232..12388237, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:86691503..86691504,-#_986f5708225d9b91a75c567d6eeb21da | p@chr12:86691503..86691504, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:48398664..48398684,-#_986f5708225d9b91a75c567d6eeb21da | p@chr6:48398664..48398684, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr16:85801525..85801529,-#_986f5708225d9b91a75c567d6eeb21da | p6@Adamts1 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:93942324..93942342,-#_986f5708225d9b91a75c567d6eeb21da | p@chr10:93942324..93942342, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:12388232..12388237,+#_986f5708225d9b91a75c567d6eeb21da | p@chr17:12388232..12388237, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:4336287..4336296,-#_986f5708225d9b91a75c567d6eeb21da | p8@Map3k8 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:82193340..82193343,+#_986f5708225d9b91a75c567d6eeb21da | p@chr15:82193340..82193343, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:35881716..35881727,-#_986f5708225d9b91a75c567d6eeb21da | p@chr18:35881716..35881727, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:39297570..39297573,-#_986f5708225d9b91a75c567d6eeb21da | p@chr18:39297570..39297573, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr14:15179132..15179141,+#_986f5708225d9b91a75c567d6eeb21da | p8@Il3ra |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:84756280..84756286,+#_986f5708225d9b91a75c567d6eeb21da | p@chr2:84756280..84756286, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr2:11935531..11935538,-#_986f5708225d9b91a75c567d6eeb21da | p@chr2:11935531..11935538, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35093377..35093381,+#_986f5708225d9b91a75c567d6eeb21da | p@chr17:35093377..35093381, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:113543694..113543702,-#_986f5708225d9b91a75c567d6eeb21da | p@chr13:113543694..113543702, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35096519..35096524,+#_986f5708225d9b91a75c567d6eeb21da | p@chr17:35096519..35096524, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:86713876..86713879,+#_986f5708225d9b91a75c567d6eeb21da | p@chr8:86713876..86713879, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr9:45920408..45920437,-#_986f5708225d9b91a75c567d6eeb21da | p@chr9:45920408..45920437, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:35881716..35881727,-#_986f5708225d9b91a75c567d6eeb21da | p@chr18:35881716..35881727, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:96429295..96429302,-#_986f5708225d9b91a75c567d6eeb21da | p@chr13:96429295..96429302, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:82207617..82207621,+#_986f5708225d9b91a75c567d6eeb21da | p@chr15:82207617..82207621, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:34549876..34549892,-#_986f5708225d9b91a75c567d6eeb21da | p@chr6:34549876..34549892, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:74684893..74684910,-#_986f5708225d9b91a75c567d6eeb21da | p@chr12:74684893..74684910, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr7:87919399..87919406,+#_986f5708225d9b91a75c567d6eeb21da | p@chr7:87919399..87919406, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:60279719..60279737,-#_986f5708225d9b91a75c567d6eeb21da | p@chr10:60279719..60279737, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:11183699..11183703,-#_986f5708225d9b91a75c567d6eeb21da | p@chr8:11183699..11183703, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:53111093..53111095,+#_986f5708225d9b91a75c567d6eeb21da | p@chr5:53111093..53111095, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:109223779..109223789,-#_986f5708225d9b91a75c567d6eeb21da | p@chr11:109223779..109223789, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:117419958..117419964,+#_986f5708225d9b91a75c567d6eeb21da | p@chr10:117419958..117419964, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr16:28911901..28911906,-#_986f5708225d9b91a75c567d6eeb21da | p@chr16:28911901..28911906, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:91441074..91441080,-#_986f5708225d9b91a75c567d6eeb21da | p@chr6:91441074..91441080, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:11183699..11183703,-#_986f5708225d9b91a75c567d6eeb21da | p@chr8:11183699..11183703, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:86691575..86691580,-#_986f5708225d9b91a75c567d6eeb21da | p@chr12:86691575..86691580, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:137487112..137487117,+#_986f5708225d9b91a75c567d6eeb21da | p@chr4:137487112..137487117, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:34796428..34796430,-#_986f5708225d9b91a75c567d6eeb21da | p@chr17:34796428..34796430, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:88890706..88890745,+#_986f5708225d9b91a75c567d6eeb21da | p@chr11:88890706..88890745, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chrX:166418658..166418683,+#_986f5708225d9b91a75c567d6eeb21da | p@chrX:166418658..166418683, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:32178407..32178408,-#_986f5708225d9b91a75c567d6eeb21da | p@chr15:32178407..32178408, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr5:64344878..64344887,-#_986f5708225d9b91a75c567d6eeb21da | p@chr5:64344878..64344887, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr11:107196799..107196814,+#_986f5708225d9b91a75c567d6eeb21da | p@chr11:107196799..107196814, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr1:66883923..66883955,-#_986f5708225d9b91a75c567d6eeb21da | p@chr1:66883923..66883955, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:100752983..100752984,+#_986f5708225d9b91a75c567d6eeb21da | p@chr12:100752983..100752984, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr2:133323630..133323631,+#_986f5708225d9b91a75c567d6eeb21da | p@chr2:133323630..133323631, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35096519..35096524,+#_986f5708225d9b91a75c567d6eeb21da | p@chr17:35096519..35096524, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:21389022..21389032,+#_986f5708225d9b91a75c567d6eeb21da | p@chr10:21389022..21389032, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr16:85547242..85547252,+#_986f5708225d9b91a75c567d6eeb21da | p@chr16:85547242..85547252, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr3:104857794..104857802,-#_986f5708225d9b91a75c567d6eeb21da | p@chr3:104857794..104857802, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr8:127816016..127816021,+#_986f5708225d9b91a75c567d6eeb21da | p@chr8:127816016..127816021, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr10:85585949..85585969,-#_986f5708225d9b91a75c567d6eeb21da | p@chr10:85585949..85585969, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr3:121593688..121593695,+#_986f5708225d9b91a75c567d6eeb21da | p@chr3:121593688..121593695, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr17:35093616..35093631,-#_986f5708225d9b91a75c567d6eeb21da | p@chr17:35093616..35093631, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:100752983..100752984,+#_986f5708225d9b91a75c567d6eeb21da | p@chr12:100752983..100752984, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:47491114..47491123,+#_986f5708225d9b91a75c567d6eeb21da | p@chr18:47491114..47491123, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr4:126939557..126939562,+#_986f5708225d9b91a75c567d6eeb21da | p@chr4:126939557..126939562, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:38831400..38831402,-#_986f5708225d9b91a75c567d6eeb21da | p@chr18:38831400..38831402, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr10:93819538..93819549,+#_986f5708225d9b91a75c567d6eeb21da | p@chr10:93819538..93819549, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr12:86691530..86691535,-#_986f5708225d9b91a75c567d6eeb21da | p@chr12:86691530..86691535, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr18:44793802..44793835,+#_986f5708225d9b91a75c567d6eeb21da | p@chr18:44793802..44793835, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:90508949..90508955,-#_986f5708225d9b91a75c567d6eeb21da | p@chr15:90508949..90508955, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:114422970..114422985,-#_986f5708225d9b91a75c567d6eeb21da | p@chr5:114422970..114422985, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:60398371..60398393,-#_986f5708225d9b91a75c567d6eeb21da | p@chr18:60398371..60398393, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr8:111108947..111108951,+#_986f5708225d9b91a75c567d6eeb21da | p@chr8:111108947..111108951, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr5:124112234..124112240,+#_986f5708225d9b91a75c567d6eeb21da | p@chr5:124112234..124112240, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:107196799..107196814,+#_986f5708225d9b91a75c567d6eeb21da | p@chr11:107196799..107196814, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:5840965..5840966,+#_986f5708225d9b91a75c567d6eeb21da | p@chr13:5840965..5840966, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:113554186..113554192,+#_986f5708225d9b91a75c567d6eeb21da | p@chr13:113554186..113554192, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr12:81955014..81955018,+#_986f5708225d9b91a75c567d6eeb21da | p@chr12:81955014..81955018, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:82207617..82207621,+#_986f5708225d9b91a75c567d6eeb21da | p@chr15:82207617..82207621, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr18:39513150..39513152,+#_986f5708225d9b91a75c567d6eeb21da | p@chr18:39513150..39513152, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr17:35093616..35093631,-#_986f5708225d9b91a75c567d6eeb21da | p@chr17:35093616..35093631, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr1:132405466..132405470,+#_986f5708225d9b91a75c567d6eeb21da | p@chr1:132405466..132405470, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:113550715..113550722,-#_986f5708225d9b91a75c567d6eeb21da | p@chr13:113550715..113550722, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr13:96429295..96429302,-#_986f5708225d9b91a75c567d6eeb21da | p@chr13:96429295..96429302, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr3:90270007..90270012,+#_986f5708225d9b91a75c567d6eeb21da | p@chr3:90270007..90270012, + |
| 3.07e-86 | FFCP PHASE1:Mm9::chr13:96429602..96429605,-#_986f5708225d9b91a75c567d6eeb21da | p@chr13:96429602..96429605, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:54785454..54785456,-#_986f5708225d9b91a75c567d6eeb21da | p@chr11:54785454..54785456, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr16:30944451..30944485,+#_986f5708225d9b91a75c567d6eeb21da | p@chr16:30944451..30944485, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr15:82209805..82209851,+#_986f5708225d9b91a75c567d6eeb21da | p@chr15:82209805..82209851, + |
| 3.07e-86 | FFCP PHASE2:Mm9::chr16:11009028..11009039,+#_986f5708225d9b91a75c567d6eeb21da | p4@Gm4262 |
| 3.07e-86 | FFCP PHASE1:Mm9::chr3:104857794..104857802,-#_986f5708225d9b91a75c567d6eeb21da | p@chr3:104857794..104857802, - |
| 3.07e-86 | FFCP PHASE2:Mm9::chr6:51831254..51831256,-#_986f5708225d9b91a75c567d6eeb21da | p@chr6:51831254..51831256, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr15:59435855..59435878,-#_986f5708225d9b91a75c567d6eeb21da | p@chr15:59435855..59435878, - |
| 3.07e-86 | FFCP PHASE1:Mm9::chr11:88890706..88890745,+#_986f5708225d9b91a75c567d6eeb21da | p@chr11:88890706..88890745, + |
