UBERON:0005181: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 13: | Line 13: | ||
|located_in= | |located_in= | ||
|name=thoracic segment organ | |name=thoracic segment organ | ||
|namespace= | |namespace=FANTOM | ||
|obo_creation_date= | |obo_creation_date= | ||
|part_of=UBERON:0000915 | |part_of=UBERON:0000915 |
Latest revision as of 17:51, 12 September 2014
Name: | thoracic segment organ | ||
---|---|---|---|
Namespace: | FANTOM | ||
Xrefs: |
| ||
Synonyms: | "upper body organ" RELATED [MA:0000563] |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0005177(trunk region element) |
---|---|
part_of: | UBERON:0000915(thoracic segment of trunk) |
Children
is a: | UBERON:0000948 (heart),UBERON:0001103 (diaphragm),UBERON:0003830 (thoracic segment muscle),UBERON:0005175 (chest organ),UBERON:0005178 (thoracic cavity element) |
---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10099-102C9
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
... further results Mouse (Mus musculus)
- 10015-101C6 (esophagus, adult, pool1)
- 10019-101D1 (lung, adult, pool1)
- 10029-101E2 (trachea, adult, pool1)
- 10058-101H4 (trachea, fetal, donor1)
- 10068-101I5 (lung, fetal, donor1)
- 10069-101I6 (diaphragm, fetal, donor1)
- 10075-102A3 (lung, right lower lobe, adult, donor1)
- 10090-102B9
- 10099-102C9
- 10408-106B3 (lung adenocarcinoma cell line:PC-14)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005181 (thoracic segment organ), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data