FFCP PHASE1:Hg19::chr2:176971685..176971700,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
No edit summary |
No edit summary |
||
Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=3237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=5134 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=P31277 | ||
|association_with_transcript=-313bp_to_ENST00000249504_5end | |association_with_transcript=-313bp_to_ENST00000249504_5end | ||
|cluster_id=chr2:176971685..176971700,+ | |cluster_id=chr2:176971685..176971700,+ |
Latest revision as of 08:45, 18 September 2015
Short description: | p6@HOXD11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_HOXD11_5end |
Coexpression cluster: | C1885_neuroectodermal_nonsmall_small_neuroblastoma_embryonic_merkel_hairy |
Association with transcript: | -313bp_to_ENST00000249504_5end |
EntrezGene: | HOXD11 |
HGNC: | 5134 |
UniProt: | P31277 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p6@HOXD11 |
---|
0
5
10
15
20
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of nephron | 2.50e-31 | 15 |
kidney tubule cell | 7.13e-31 | 10 |
nephron tubule epithelial cell | 7.13e-31 | 10 |
kidney cell | 2.01e-27 | 17 |
kidney epithelial cell | 2.01e-27 | 17 |
kidney cortical cell | 1.97e-19 | 12 |
renal cortical epithelial cell | 1.97e-19 | 12 |
glomerular cell | 1.03e-11 | 7 |
kidney corpuscule cell | 1.03e-11 | 7 |
mesangial cell | 2.11e-11 | 2 |
Showing 1 to 10 of 14 entries
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 2.50e-31 | 15 |
renal tubule | 2.50e-31 | 15 |
nephron tubule | 2.50e-31 | 15 |
nephron | 2.50e-31 | 15 |
uriniferous tubule | 2.50e-31 | 15 |
nephrogenic mesenchyme | 2.50e-31 | 15 |
nephron tubule epithelium | 7.13e-31 | 10 |
kidney | 1.31e-29 | 26 |
kidney mesenchyme | 1.31e-29 | 26 |
upper urinary tract | 1.31e-29 | 26 |
Showing 1 to 10 of 61 entries
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 1.22e-17 | 10 |
neuroendocrine tumor | 6.28e-08 | 6 |
germ cell and embryonal cancer | 1.10e-07 | 22 |
germ cell cancer | 1.10e-07 | 22 |
Showing 1 to 4 of 4 entries