UBERON:0000365: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0000365
|name=urothelium
|namespace=
|def="The urothelium is the epithelial tissue layer that lines much of the urinary tract, including the renal pelv...") |
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|part_of=UBERON:0001008 | |part_of=UBERON:0001008 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:09, 15 June 2012
| Name: | urothelium | ||
|---|---|---|---|
| Definition: | "The urothelium is the epithelial tissue layer that lines much of the urinary tract, including the renal pelvis, the ureters, the bladder, and parts of the urethra." [Wikipedia:Urothelium] | ||
| Xrefs: |
| ||
| Synonyms: | "uroepithelium" EXACT [FMA:67695] | ||
| Comments: | consider merging with transitional epithelium. MA uses the label 'urothelium' exclusively. FMA uses 'transitional epithelium' and has 'urothelium' as a sibling. FMA also lists 'urothelium' as the only example of 'transitional epithelium' | ||
| Alt_id: | UBERON:BTO_0001245-FMA_67695 |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0005910(transitional epithelium),UBERON:0006554(urinary system structure) |
|---|---|
| part_of: | UBERON:0001008(renal system) |
Children
| is a: | UBERON:0004645 (urinary bladder urothelium) |
|---|---|
| part of: | CL:0000731 (urothelial cell) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10418-106C4 (transitional-cell carcinoma cell line:5637)
- 10565-108A7
- 10587-108D2
- 10751-110D4
- 11216-116B1 (Urothelial cells, donor0)
- 11520-119H8 (Urothelial Cells, donor1)
- 11600-120H7 (Urothelial Cells, donor2)
- 11681-122H7 (Urothelial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000365 (urothelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 3.18e-79 | FFCP PHASE1:Hg19::chr10:124050511..124050520,+#_1869a6c7c2cff2f0a7b11d3192d915ed | p9@BTBD16 |
| 3.18e-79 | FFCP PHASE2:Hg19::chr10:124050511..124050520,+#_1869a6c7c2cff2f0a7b11d3192d915ed | p9@BTBD16 |
| 3.49e-79 | FFCP PHASE1:Hg19::chr21:39627877..39627884,+#_3d4d5f7e03458e817cbadfa9e969e7b8 | p@chr21:39627877..39627884, + |
| 3.49e-79 | FFCP PHASE2:Hg19::chr21:39627877..39627884,+#_3d4d5f7e03458e817cbadfa9e969e7b8 | p@chr21:39627877..39627884, + |
| 1.81e-70 | FFCP PHASE2:Hg19::chr10:124050568..124050578,+#_44c3cd45542c084abe3c81aed759d708 | p6@BTBD16 |
| 1.81e-70 | FFCP PHASE1:Hg19::chr10:124050568..124050578,+#_44c3cd45542c084abe3c81aed759d708 | p6@BTBD16 |
| 4.32e-64 | FFCP PHASE2:Hg19::chr12:28125967..28125978,-#_9d5216b7baa5f9f85e8ba4547372f9fd | p16@PTHLH |
| 4.32e-64 | FFCP PHASE1:Hg19::chr12:28125967..28125978,-#_9d5216b7baa5f9f85e8ba4547372f9fd | p16@PTHLH |
| 7.01e-64 | FFCP PHASE1:Hg19::chr5:61213179..61213189,-#_52db06b26fabc052cf64b5044180b711 | p@chr5:61213179..61213189, - |
| 7.01e-64 | FFCP PHASE2:Hg19::chr5:61213179..61213189,-#_52db06b26fabc052cf64b5044180b711 | p@chr5:61213179..61213189, - |
| 1.35e-59 | FFCP PHASE1:Hg19::chrX:102977640..102977644,-#_97fe39de58887d2ca0841cb1aad6f0c1 | p@chrX:102977640..102977644, - |
| 1.35e-59 | FFCP PHASE2:Hg19::chrX:102977640..102977644,-#_97fe39de58887d2ca0841cb1aad6f0c1 | p@chrX:102977640..102977644, - |
| 1.65e-59 | FFCP PHASE1:Hg19::chr9:27524417..27524425,+#_4d07e68aa1ceb0439ec5a58f0d2e106f | p4@IFNK |
| 1.65e-59 | FFCP PHASE2:Hg19::chr9:27524417..27524425,+#_4d07e68aa1ceb0439ec5a58f0d2e106f | p4@IFNK |
| 4.82e-58 | FFCP PHASE1:Hg19::chr1:40492754..40492762,+#_1912bc9a02e770de546eb5852e2841b0 | p@chr1:40492754..40492762, + |
| 4.82e-58 | FFCP PHASE2:Hg19::chr1:40492754..40492762,+#_1912bc9a02e770de546eb5852e2841b0 | p@chr1:40492754..40492762, + |
| 5.58e-58 | FFCP PHASE1:Hg19::chr10:3954276..3954287,+#_b9af23c33fe7f3f990ef97826d94e92e | p@chr10:3954276..3954287, + |
| 5.58e-58 | FFCP PHASE2:Hg19::chr10:3954276..3954287,+#_b9af23c33fe7f3f990ef97826d94e92e | p@chr10:3954276..3954287, + |
| 7.03e-54 | FFCP PHASE2:Hg19::chr12:28125953..28125964,-#_0f1fead95c2953e01873c3ec380761a7 | p17@PTHLH |
| 7.03e-54 | FFCP PHASE1:Hg19::chr12:28125953..28125964,-#_0f1fead95c2953e01873c3ec380761a7 | p17@PTHLH |
| 2.19e-53 | FFCP PHASE1:Hg19::chr8:141728731..141728740,-#_f5a28b73ba8a69043340ddbadca5e261 | p38@PTK2 |
| 2.19e-53 | FFCP PHASE2:Hg19::chr8:141728731..141728740,-#_f5a28b73ba8a69043340ddbadca5e261 | p38@PTK2 |
| 1.15e-51 | FFCP PHASE1:Hg19::chr5:61213127..61213133,-#_05d58ee83060de640bfe4a726a1500d0 | p@chr5:61213127..61213133, - |
| 1.15e-51 | FFCP PHASE2:Hg19::chr5:61213127..61213133,-#_05d58ee83060de640bfe4a726a1500d0 | p@chr5:61213127..61213133, - |
| 2.73e-51 | FFCP PHASE1:Hg19::chr21:44168074..44168079,+#_92bf69a66a7f983b1a2556e4701dfa83 | p@chr21:44168074..44168079, + |
| 2.73e-51 | FFCP PHASE2:Hg19::chr21:44168074..44168079,+#_92bf69a66a7f983b1a2556e4701dfa83 | p@chr21:44168074..44168079, + |
| 3.85e-51 | FFCP PHASE1:Hg19::chr4:125341514..125341526,-#_0c84858ea8c4c50135ccfeb0bc479b3a | p@chr4:125341514..125341526, - |
| 3.85e-51 | FFCP PHASE2:Hg19::chr4:125341514..125341526,-#_0c84858ea8c4c50135ccfeb0bc479b3a | p@chr4:125341514..125341526, - |
| 2.51e-49 | FFCP PHASE1:Hg19::chr10:127763979..127763984,+#_236ee3cc42ada786119bb5adb47d4c0a | p@chr10:127763979..127763984, + |
| 2.51e-49 | FFCP PHASE2:Hg19::chr10:127763979..127763984,+#_236ee3cc42ada786119bb5adb47d4c0a | p@chr10:127763979..127763984, + |
| 1.78e-45 | FFCP PHASE2:Hg19::chr11:127965855..127965866,+#_970f4604947b44625bcf0265065a7277 | p@chr11:127965855..127965866, + |
| 1.78e-45 | FFCP PHASE1:Hg19::chr11:127965855..127965866,+#_970f4604947b44625bcf0265065a7277 | p@chr11:127965855..127965866, + |
| 2.51e-45 | FFCP PHASE1:Hg19::chr19:15065111..15065171,-#_ec71ea121e46c0c1a1ee6546fd55c075 | p@chr19:15065111..15065171, - |
| 2.51e-45 | FFCP PHASE2:Hg19::chr19:15065111..15065171,-#_ec71ea121e46c0c1a1ee6546fd55c075 | p@chr19:15065111..15065171, - |
| 2.12e-43 | FFCP PHASE2:Hg19::chr10:124050535..124050566,+#_3b1f8ec3847e296bb0fddedc645dc33c | p3@BTBD16 |
| 2.12e-43 | FFCP PHASE1:Hg19::chr10:124050535..124050566,+#_3b1f8ec3847e296bb0fddedc645dc33c | p3@BTBD16 |
| 6.95e-43 | FFCP PHASE1:Hg19::chr6:151358048..151358060,+#_e0a7ade7ee473a7b0897daaf0674cc55 | p13@MTHFD1L |
| 6.95e-43 | FFCP PHASE2:Hg19::chr6:151358048..151358060,+#_e0a7ade7ee473a7b0897daaf0674cc55 | p13@MTHFD1L |
| 2.26e-42 | FFCP PHASE1:Hg19::chr7:2019948..2019961,-#_f1585a0e9eee0da30bfbfe8b16b31ef7 | p@chr7:2019948..2019961, - |
| 2.26e-42 | FFCP PHASE2:Hg19::chr7:2019948..2019961,-#_f1585a0e9eee0da30bfbfe8b16b31ef7 | p@chr7:2019948..2019961, - |
| 1.16e-40 | FFCP PHASE1:Hg19::chr7:150813498..150813509,+#_0732606a1634d2c8734d28e475aa2d3d | p30@AGAP3 |
| 1.16e-40 | FFCP PHASE2:Hg19::chr7:150813498..150813509,+#_0732606a1634d2c8734d28e475aa2d3d | p30@AGAP3 |
| 1.29e-40 | FFCP PHASE1:Hg19::chr2:31560793..31560814,-#_cd82bf974bf8f4dd87fda3d2f35804a3 | p@chr2:31560793..31560814, - |
| 1.29e-40 | FFCP PHASE2:Hg19::chr2:31560793..31560814,-#_cd82bf974bf8f4dd87fda3d2f35804a3 | p@chr2:31560793..31560814, - |
| 1.48e-40 | FFCP PHASE1:Hg19::chr10:5660248..5660254,-#_34432925880934f8cb5ce5818513ad5e | p2@ENST00000427341 |
| 1.48e-40 | FFCP PHASE2:Hg19::chr15:101282110..101282113,+#_34432925880934f8cb5ce5818513ad5e | p@chr15:101282110..101282113, + |
| 1.48e-40 | FFCP PHASE2:Hg19::chr10:5660248..5660254,-#_34432925880934f8cb5ce5818513ad5e | p2@ENST00000427341 |
| 1.48e-40 | FFCP PHASE1:Hg19::chr15:101282110..101282113,+#_34432925880934f8cb5ce5818513ad5e | p@chr15:101282110..101282113, + |
| 1.7e-40 | FFCP PHASE1:Hg19::chr13:20934450..20934456,+#_967ce8b69718b4a22e369c9d451ec420 | p@chr13:20934450..20934456, + |
| 1.7e-40 | FFCP PHASE2:Hg19::chr13:20934450..20934456,+#_967ce8b69718b4a22e369c9d451ec420 | p@chr13:20934450..20934456, + |
| 2.71e-40 | FFCP PHASE2:Hg19::chr14:85935018..85935023,-#_97ddb14fe300406a0582f5fb5c1b5c07 | p@chr14:85935018..85935023, - |
| 2.71e-40 | FFCP PHASE1:Hg19::chr14:85935018..85935023,-#_97ddb14fe300406a0582f5fb5c1b5c07 | p@chr14:85935018..85935023, - |
| 3.31e-40 | FFCP PHASE1:Hg19::chr9:113802868..113802878,-#_f961b54373f71adac0b41fb1f62ced37 | p@chr9:113802868..113802878, - |
| 3.31e-40 | FFCP PHASE1:Hg19::chr9:21564382..21564387,-#_f961b54373f71adac0b41fb1f62ced37 | p@chr9:21564382..21564387, - |
| 3.31e-40 | FFCP PHASE2:Hg19::chr9:113802868..113802878,-#_f961b54373f71adac0b41fb1f62ced37 | p@chr9:113802868..113802878, - |
| 3.31e-40 | FFCP PHASE2:Hg19::chr9:21564382..21564387,-#_f961b54373f71adac0b41fb1f62ced37 | p@chr9:21564382..21564387, - |
| 4.05e-40 | FFCP PHASE1:Hg19::chr19:43965689..43965700,-#_0ba3c9878eb1b6bbda8d999d4dfd05e4 | p@chr19:43965689..43965700, - |
| 4.05e-40 | FFCP PHASE2:Hg19::chr19:43965689..43965700,-#_0ba3c9878eb1b6bbda8d999d4dfd05e4 | p@chr19:43965689..43965700, - |
| 7.43e-40 | FFCP PHASE1:Hg19::chr14:51956090..51956101,+#_2e8a8cc5a131f1c00eb8fd89ab9b5f64 | p32@FRMD6 |
| 7.43e-40 | FFCP PHASE2:Hg19::chr14:51956090..51956101,+#_2e8a8cc5a131f1c00eb8fd89ab9b5f64 | p32@FRMD6 |
| 1.58e-39 | FFCP PHASE1:Hg19::chr12:47472684..47472703,-#_ef089a55ca7adffd7328b4256813a1cf | p12@AMIGO2 |
| 1.58e-39 | FFCP PHASE2:Hg19::chr12:47472684..47472703,-#_ef089a55ca7adffd7328b4256813a1cf | p12@AMIGO2 |
| 1.72e-38 | FFCP PHASE1:Hg19::chr21:45020721..45020728,-#_28c07cb3dbdef1becd7a7b252a181284 | p@chr21:45020721..45020728, - |
| 1.72e-38 | FFCP PHASE2:Hg19::chr21:45020721..45020728,-#_28c07cb3dbdef1becd7a7b252a181284 | p@chr21:45020721..45020728, - |
| 2.51e-38 | FFCP PHASE1:Hg19::chr8:143814087..143814102,-#_8872f72acf57021079efb01f2f3d7810 | p@chr8:143814087..143814102, - |
| 2.51e-38 | FFCP PHASE2:Hg19::chr8:143814087..143814102,-#_8872f72acf57021079efb01f2f3d7810 | p@chr8:143814087..143814102, - |
| 7.44e-37 | FFCP PHASE2:Hg19::chr9:21564331..21564360,-#_fd9a60837bd99774db24e9f3397fa8f3 | p@chr9:21564331..21564360, - |
| 7.44e-37 | FFCP PHASE1:Hg19::chr9:21564331..21564360,-#_fd9a60837bd99774db24e9f3397fa8f3 | p@chr9:21564331..21564360, - |
| 2.0e-36 | FFCP PHASE1:Hg19::chr1:183192299..183192310,+#_c78f29c1d255323b52396fb9d27a7b1e | p@chr1:183192299..183192310, + |
| 2.0e-36 | FFCP PHASE2:Hg19::chr1:183192299..183192310,+#_c78f29c1d255323b52396fb9d27a7b1e | p@chr1:183192299..183192310, + |
| 2.26e-36 | FFCP PHASE1:Hg19::chr4:125341479..125341498,-#_4de95e6e13059806212f2040e6dbee0e | p@chr4:125341479..125341498, - |
| 2.26e-36 | FFCP PHASE2:Hg19::chr4:125341479..125341498,-#_4de95e6e13059806212f2040e6dbee0e | p@chr4:125341479..125341498, - |
| 2.26e-36 | FFCP PHASE1:Hg19::chr2:20402306..20402318,-#_4de95e6e13059806212f2040e6dbee0e | p@chr2:20402306..20402318, - |
| 2.26e-36 | FFCP PHASE2:Hg19::chr2:20402306..20402318,-#_4de95e6e13059806212f2040e6dbee0e | p@chr2:20402306..20402318, - |
| 3.25e-36 | FFCP PHASE1:Hg19::chr9:27524537..27524559,+#_aa57c0c143839567f33e94bc97cc37bd | p1@IFNK |
| 3.25e-36 | FFCP PHASE2:Hg19::chr9:27524537..27524559,+#_aa57c0c143839567f33e94bc97cc37bd | p1@IFNK |
| 3.66e-36 | FFCP PHASE1:Hg19::chr13:20805611..20805619,-#_646abc375e95eb99e0e7e7c81a412189 | p6@GJB6 |
| 3.66e-36 | FFCP PHASE1:Hg19::chr1:99387558..99387571,-#_646abc375e95eb99e0e7e7c81a412189 | p@chr1:99387558..99387571, - |
| 3.66e-36 | FFCP PHASE2:Hg19::chr1:99387558..99387571,-#_646abc375e95eb99e0e7e7c81a412189 | p@chr1:99387558..99387571, - |
| 3.66e-36 | FFCP PHASE2:Hg19::chr13:20805611..20805619,-#_646abc375e95eb99e0e7e7c81a412189 | p6@GJB6 |
| 3.13e-35 | FFCP PHASE1:Hg19::chr20:56273255..56273292,-#_5a48352e7f344ff187b4e95072209072 | p@chr20:56273255..56273292, - |
| 3.13e-35 | FFCP PHASE2:Hg19::chr20:56273255..56273292,-#_5a48352e7f344ff187b4e95072209072 | p@chr20:56273255..56273292, - |
| 6.51e-35 | FFCP PHASE1:Hg19::chr10:124050485..124050505,+#_642870796429826c8531cfff5448ccc6 | p2@BTBD16 |
| 6.51e-35 | FFCP PHASE2:Hg19::chr10:124050485..124050505,+#_642870796429826c8531cfff5448ccc6 | p2@BTBD16 |
| 1.79e-33 | FFCP PHASE1:Hg19::chr1:183212642..183212654,+#_b50a63e40bb391fd710e6f5a46a7e1c4 | p@chr1:183212642..183212654, + |
| 1.79e-33 | FFCP PHASE2:Hg19::chr1:183212642..183212654,+#_b50a63e40bb391fd710e6f5a46a7e1c4 | p@chr1:183212642..183212654, + |
| 3.1e-33 | FFCP PHASE1:Hg19::chr6:44096519..44096530,-#_f01c9f572b8fa2c1bbf05a3284313085 | p@chr6:44096519..44096530, - |
| 3.1e-33 | FFCP PHASE2:Hg19::chr6:44096519..44096530,-#_f01c9f572b8fa2c1bbf05a3284313085 | p@chr6:44096519..44096530, - |
| 3.1e-33 | FFCP PHASE1:Hg19::chr5:149877396..149877405,+#_f01c9f572b8fa2c1bbf05a3284313085 | p19@NDST1 |
| 3.1e-33 | FFCP PHASE2:Hg19::chr5:149877396..149877405,+#_f01c9f572b8fa2c1bbf05a3284313085 | p19@NDST1 |
| 4.16e-33 | FFCP PHASE2:Hg19::chr13:20762566..20762577,-#_a895262b3b677fbdbc8d0084b11e336f | p@chr13:20762566..20762577, - |
| 4.16e-33 | FFCP PHASE1:Hg19::chr13:20762566..20762577,-#_a895262b3b677fbdbc8d0084b11e336f | p@chr13:20762566..20762577, - |
| 6.26e-33 | FFCP PHASE1:Hg19::chr3:13921498..13921503,-#_af355c2ff634517ba907091693f80634 | p6@WNT7A |
| 6.26e-33 | FFCP PHASE2:Hg19::chr3:13921498..13921503,-#_af355c2ff634517ba907091693f80634 | p6@WNT7A |
| 9.4e-33 | FFCP PHASE1:Hg19::chr5:146263947..146263959,-#_954e2fdace37c82261231857ef8cd097 | p@chr5:146263947..146263959, - |
| 9.4e-33 | FFCP PHASE2:Hg19::chr5:146263947..146263959,-#_954e2fdace37c82261231857ef8cd097 | p@chr5:146263947..146263959, - |
| 1.23e-32 | FFCP PHASE1:Hg19::chr21:39628993..39628998,+#_2b491b1d8a8234d7ccce009ec547c1ac | p25@KCNJ15 |
| 1.23e-32 | FFCP PHASE2:Hg19::chr21:39628993..39628998,+#_2b491b1d8a8234d7ccce009ec547c1ac | p25@KCNJ15 |
| 1.8e-32 | FFCP PHASE1:Hg19::chr1:183204832..183204840,+#_1f1edb9ada1818fc816d7f7491bd118d | p@chr1:183204832..183204840, + |
| 1.8e-32 | FFCP PHASE2:Hg19::chr1:183204832..183204840,+#_1f1edb9ada1818fc816d7f7491bd118d | p@chr1:183204832..183204840, + |
