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Revision as of 17:15, 15 June 2012

Name:thoracic cavity
Definition:"Body cavity subdivision which is enclosed by the thoracic wall and the diaphragm[FMA]." [FMA:7565, Wikipedia:Thoracic_cavity]
Xrefs:
links:

FMA:7565
GAID:93
[ 200px-Scheme_body_cavities-en.svg.png 200px-Scheme_body_cavities-en.svg.png]
MA:0000032
MESH:A.01.911.800
ncithesaurus:Thoracic_Cavity
OpenCyc:Mx4rmvyleLfEEduAAAACs6hRXg
OpenCyc:Mx4rvhU_TpwpEbGdrcN5Y29ycA

SCTID:243949006
Synonyms: "cavity of chest" EXACT []
"cavity of thorax" EXACT []
"chest cavity" EXACT []
"pectoral cavity" EXACT []
"space of thoracic compartment" EXACT [FMA:7565]
Comments:This class was created automatically from a combination of ontologies
Alt_id: UBERON:FMA_7565-MA_0000032
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000464(anatomical space)
part_of:UBERON:0000915(thoracic segment of trunk)



Children NA

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002224 (thoracic cavity), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.21e-66FFCP PHASE2:Mm9::chr11:85703335..85703350,+#_859d9428304bd19141808240624fa87cp4@Tbx4
1.21e-66FFCP PHASE1:Mm9::chr11:85703335..85703350,+#_859d9428304bd19141808240624fa87cp4@Tbx4
4.71e-66FFCP PHASE2:Mm9::chr9:20829911..20829920,+#_3837079dac416688b8789d438e306dfbp@chr9:20829911..20829920, +
4.71e-66FFCP PHASE1:Mm9::chr9:20829911..20829920,+#_3837079dac416688b8789d438e306dfbp@chr9:20829911..20829920, +
1.06e-62FFCP PHASE1:Mm9::chr11:85589157..85589190,-#_d32ba4677b69ee6e6e73eac9b78e827bp1@ENSMUST00000134305
1.06e-62FFCP PHASE2:Mm9::chr11:85589157..85589190,-#_d32ba4677b69ee6e6e73eac9b78e827bp1@ENSMUST00000134305
1.52e-61FFCP PHASE1:Mm9::chr11:85533239..85533252,-#_f2f5617d136e09b5481c77631ac37ee4p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
1.52e-61FFCP PHASE2:Mm9::chr11:85533239..85533252,-#_f2f5617d136e09b5481c77631ac37ee4p1@ENSMUST00000146806, p1@ENSMUST00000151652, p1@uc007krv.1, p1@uc007krw.1
1.91e-61FFCP PHASE2:Mm9::chr11:85699562..85699575,+#_8f98a1f7227a21901febbc34b6a9db35p6@Tbx4
1.91e-61FFCP PHASE1:Mm9::chr11:85699562..85699575,+#_8f98a1f7227a21901febbc34b6a9db35p6@Tbx4
5.56e-61FFCP PHASE1:Mm9::chr8:94878479..94878503,-#_c3443aba2ca4b839eda120fa9d5f05b1p@chr8:94878479..94878503, -
5.56e-61FFCP PHASE1:Mm9::chr4:138812977..138812992,+#_c3443aba2ca4b839eda120fa9d5f05b1p@chr4:138812977..138812992, +
5.56e-61FFCP PHASE2:Mm9::chr12:57598716..57598720,-#_c3443aba2ca4b839eda120fa9d5f05b1p@chr12:57598716..57598720, -
5.56e-61FFCP PHASE1:Mm9::chr12:57636003..57636017,-#_c3443aba2ca4b839eda120fa9d5f05b1p@chr12:57636003..57636017, -
5.56e-61FFCP PHASE1:Mm9::chr12:57598716..57598720,-#_c3443aba2ca4b839eda120fa9d5f05b1p@chr12:57598716..57598720, -
5.56e-61FFCP PHASE2:Mm9::chr4:138812977..138812992,+#_c3443aba2ca4b839eda120fa9d5f05b1p@chr4:138812977..138812992, +
5.56e-61FFCP PHASE2:Mm9::chr12:57636003..57636017,-#_c3443aba2ca4b839eda120fa9d5f05b1p@chr12:57636003..57636017, -
5.56e-61FFCP PHASE1:Mm9::chr11:59457994..59457997,-#_c3443aba2ca4b839eda120fa9d5f05b1p@chr11:59457994..59457997, -
5.56e-61FFCP PHASE2:Mm9::chr8:94878479..94878503,-#_c3443aba2ca4b839eda120fa9d5f05b1p@chr8:94878479..94878503, -
5.56e-61FFCP PHASE2:Mm9::chr11:59457994..59457997,-#_c3443aba2ca4b839eda120fa9d5f05b1p@chr11:59457994..59457997, -
1.35e-60FFCP PHASE2:Mm9::chr7:56809246..56809272,+#_ed81ffebede32ebd3f2a4fac56863515p9@Nav2
1.35e-60FFCP PHASE1:Mm9::chr7:56809246..56809272,+#_ed81ffebede32ebd3f2a4fac56863515p9@Nav2
2.87e-58FFCP PHASE2:Mm9::chr12:57633887..57633899,-#_23dac743503944ec29f7c34ba3ef3325p@chr12:57633887..57633899, -
2.87e-58FFCP PHASE1:Mm9::chr12:57633887..57633899,-#_23dac743503944ec29f7c34ba3ef3325p@chr12:57633887..57633899, -
1.23e-57FFCP PHASE1:Mm9::chr12:57637649..57637665,-#_9ff8cec9238281e169bcde136e90a87bp8@Nkx2-1
1.23e-57FFCP PHASE2:Mm9::chr12:57637649..57637665,-#_9ff8cec9238281e169bcde136e90a87bp8@Nkx2-1
1.37e-57FFCP PHASE1:Mm9::chr12:57630487..57630498,-#_88906dfd972e7ab7b956927451eef9bfp2@E030019B13Rik
1.37e-57FFCP PHASE2:Mm9::chr12:57630487..57630498,-#_88906dfd972e7ab7b956927451eef9bfp2@E030019B13Rik
1.53e-57FFCP PHASE1:Mm9::chr2:17653019..17653038,-#_ea3760e9f21dd29931b5f6aa8084187cp10@Nebl
1.53e-57FFCP PHASE2:Mm9::chr2:17653019..17653038,-#_ea3760e9f21dd29931b5f6aa8084187cp10@Nebl
1.7e-57FFCP PHASE1:Mm9::chr12:57637700..57637717,-#_a3a38306070d4f999d2f69d61d549868p9@Nkx2-1
1.7e-57FFCP PHASE2:Mm9::chr12:57637700..57637717,-#_a3a38306070d4f999d2f69d61d549868p9@Nkx2-1
1.79e-56FFCP PHASE2:Mm9::chr12:57598537..57598547,-#_6b97a59df3d6a761c6806184384f5732p@chr12:57598537..57598547, -
1.79e-56FFCP PHASE1:Mm9::chr12:57598537..57598547,-#_6b97a59df3d6a761c6806184384f5732p@chr12:57598537..57598547, -
1.79e-56FFCP PHASE1:Mm9::chr19:18833097..18833135,+#_6b97a59df3d6a761c6806184384f5732p3@Trpm6
1.79e-56FFCP PHASE1:Mm9::chr12:57630364..57630373,-#_6b97a59df3d6a761c6806184384f5732p3@E030019B13Rik
1.79e-56FFCP PHASE2:Mm9::chr12:57630364..57630373,-#_6b97a59df3d6a761c6806184384f5732p3@E030019B13Rik
1.79e-56FFCP PHASE2:Mm9::chr19:18833097..18833135,+#_6b97a59df3d6a761c6806184384f5732p3@Trpm6
2.01e-56FFCP PHASE2:Mm9::chr14:115241755..115241762,-#_b5f8a56f9e4a3b427668e90825dbcedap@chr14:115241755..115241762, -
2.01e-56FFCP PHASE2:Mm9::chr12:57636278..57636289,+#_b5f8a56f9e4a3b427668e90825dbcedap@chr12:57636278..57636289, +
2.01e-56FFCP PHASE1:Mm9::chr12:57636278..57636289,+#_b5f8a56f9e4a3b427668e90825dbcedap@chr12:57636278..57636289, +
2.01e-56FFCP PHASE1:Mm9::chr14:115241755..115241762,-#_b5f8a56f9e4a3b427668e90825dbcedap@chr14:115241755..115241762, -
2.24e-56FFCP PHASE1:Mm9::chr4:138812999..138813015,+#_f61f38e6567ad7a000b0a1119a933cfcp@chr4:138812999..138813015, +
2.24e-56FFCP PHASE2:Mm9::chr4:138812999..138813015,+#_f61f38e6567ad7a000b0a1119a933cfcp@chr4:138812999..138813015, +
3.93e-56FFCP PHASE1:Mm9::chr1:40522810..40522820,+#_686e0d46c5b3e348edf725a07b14a820p7@Il18r1
3.93e-56FFCP PHASE2:Mm9::chr1:40522810..40522820,+#_686e0d46c5b3e348edf725a07b14a820p7@Il18r1
6.2e-56FFCP PHASE2:Mm9::chr1:184610062..184610074,+#_5f0420dfc5b024a513381ed2a58e6e0ap@chr1:184610062..184610074, +
6.2e-56FFCP PHASE2:Mm9::chr2:164374820..164374835,-#_5f0420dfc5b024a513381ed2a58e6e0ap@chr2:164374820..164374835, -
6.2e-56FFCP PHASE2:Mm9::chr6:72256828..72256859,+#_5f0420dfc5b024a513381ed2a58e6e0ap3@Sftpb
6.2e-56FFCP PHASE1:Mm9::chr14:70922576..70922589,-#_5f0420dfc5b024a513381ed2a58e6e0ap@chr14:70922576..70922589, -
6.2e-56FFCP PHASE1:Mm9::chr2:164374820..164374835,-#_5f0420dfc5b024a513381ed2a58e6e0ap@chr2:164374820..164374835, -
6.2e-56FFCP PHASE1:Mm9::chr1:184610062..184610074,+#_5f0420dfc5b024a513381ed2a58e6e0ap@chr1:184610062..184610074, +
6.2e-56FFCP PHASE1:Mm9::chr6:72256828..72256859,+#_5f0420dfc5b024a513381ed2a58e6e0ap3@Sftpb
6.2e-56FFCP PHASE1:Mm9::chr14:70921265..70921285,-#_5f0420dfc5b024a513381ed2a58e6e0ap@chr14:70921265..70921285, -
6.2e-56FFCP PHASE2:Mm9::chr6:72255924..72255936,+#_5f0420dfc5b024a513381ed2a58e6e0ap4@Sftpb
6.2e-56FFCP PHASE2:Mm9::chr14:70922576..70922589,-#_5f0420dfc5b024a513381ed2a58e6e0ap@chr14:70922576..70922589, -
6.2e-56FFCP PHASE1:Mm9::chr6:72255924..72255936,+#_5f0420dfc5b024a513381ed2a58e6e0ap4@Sftpb
6.2e-56FFCP PHASE2:Mm9::chr2:66524237..66524246,-#_5f0420dfc5b024a513381ed2a58e6e0ap@chr2:66524237..66524246, -
6.2e-56FFCP PHASE1:Mm9::chr2:66524237..66524246,-#_5f0420dfc5b024a513381ed2a58e6e0ap@chr2:66524237..66524246, -
6.2e-56FFCP PHASE2:Mm9::chr14:70921265..70921285,-#_5f0420dfc5b024a513381ed2a58e6e0ap@chr14:70921265..70921285, -
9.42e-56FFCP PHASE2:Mm9::chr5:120282691..120282701,+#_b9306ccc777d97e736b5604a5e136f2dp@chr5:120282691..120282701, +
9.42e-56FFCP PHASE1:Mm9::chr5:120282691..120282701,+#_b9306ccc777d97e736b5604a5e136f2dp@chr5:120282691..120282701, +
1.34e-54FFCP PHASE2:Mm9::chr12:57636911..57636924,-#_5f8673f67f37b01aa16c67c80cb900f2p@chr12:57636911..57636924, -
1.34e-54FFCP PHASE1:Mm9::chr12:57636911..57636924,-#_5f8673f67f37b01aa16c67c80cb900f2p@chr12:57636911..57636924, -
3.97e-54FFCP PHASE1:Mm9::chr12:57630443..57630450,-#_d965edf235911f154d1f89b5dd1a7f31p4@E030019B13Rik
3.97e-54FFCP PHASE2:Mm9::chr12:57630443..57630450,-#_d965edf235911f154d1f89b5dd1a7f31p4@E030019B13Rik
1.46e-52FFCP PHASE1:Mm9::chr12:57623172..57623185,-#_cd38cdd5778e1fa4d564712f3829bee0p@chr12:57623172..57623185, -
1.46e-52FFCP PHASE1:Mm9::chr14:70922007..70922052,+#_cd38cdd5778e1fa4d564712f3829bee0p@chr14:70922007..70922052, +
1.46e-52FFCP PHASE2:Mm9::chr14:70922007..70922052,+#_cd38cdd5778e1fa4d564712f3829bee0p@chr14:70922007..70922052, +
1.46e-52FFCP PHASE2:Mm9::chr12:57623172..57623185,-#_cd38cdd5778e1fa4d564712f3829bee0p@chr12:57623172..57623185, -
1.62e-52FFCP PHASE2:Mm9::chr5:28785436..28785450,-#_82fbaba8853d0cce23bf4635614c4fefp@chr5:28785436..28785450, -
1.62e-52FFCP PHASE1:Mm9::chr5:28785436..28785450,-#_82fbaba8853d0cce23bf4635614c4fefp@chr5:28785436..28785450, -
1.8e-52FFCP PHASE2:Mm9::chr14:70922459..70922482,-#_835d2299b49b49ece29dbe3ee3399e8bp@chr14:70922459..70922482, -
1.8e-52FFCP PHASE1:Mm9::chr14:70922459..70922482,-#_835d2299b49b49ece29dbe3ee3399e8bp@chr14:70922459..70922482, -
5.65e-52FFCP PHASE1:Mm9::chr16:22439804..22439806,-#_8a9fa8864d0b2beda64472c862613ef1p4@Etv5
5.65e-52FFCP PHASE2:Mm9::chr16:22439804..22439806,-#_8a9fa8864d0b2beda64472c862613ef1p4@Etv5
1.97e-51FFCP PHASE1:Mm9::chr14:70922486..70922510,-#_da8e811de2c5ebb927b04b23cd71e26cp@chr14:70922486..70922510, -
1.97e-51FFCP PHASE2:Mm9::chr14:70923240..70923251,-#_da8e811de2c5ebb927b04b23cd71e26cp@chr14:70923240..70923251, -
1.97e-51FFCP PHASE2:Mm9::chr6:72264890..72264911,+#_da8e811de2c5ebb927b04b23cd71e26cp@chr6:72264890..72264911, +
1.97e-51FFCP PHASE2:Mm9::chr14:70922486..70922510,-#_da8e811de2c5ebb927b04b23cd71e26cp@chr14:70922486..70922510, -
1.97e-51FFCP PHASE2:Mm9::chr6:72259797..72259814,+#_da8e811de2c5ebb927b04b23cd71e26cp@chr6:72259797..72259814, +
1.97e-51FFCP PHASE1:Mm9::chr6:72259797..72259814,+#_da8e811de2c5ebb927b04b23cd71e26cp@chr6:72259797..72259814, +
1.97e-51FFCP PHASE2:Mm9::chr6:72264418..72264441,+#_da8e811de2c5ebb927b04b23cd71e26cp@chr6:72264418..72264441, +
1.97e-51FFCP PHASE1:Mm9::chr6:72264890..72264911,+#_da8e811de2c5ebb927b04b23cd71e26cp@chr6:72264890..72264911, +
1.97e-51FFCP PHASE2:Mm9::chr12:57376690..57376716,-#_da8e811de2c5ebb927b04b23cd71e26cp@chr12:57376690..57376716, -
1.97e-51FFCP PHASE2:Mm9::chr16:19706386..19706390,-#_da8e811de2c5ebb927b04b23cd71e26cp4@Lamp3
1.97e-51FFCP PHASE1:Mm9::chr6:72263977..72263993,+#_da8e811de2c5ebb927b04b23cd71e26cp@chr6:72263977..72263993, +
1.97e-51FFCP PHASE1:Mm9::chr14:70923240..70923251,-#_da8e811de2c5ebb927b04b23cd71e26cp@chr14:70923240..70923251, -
1.97e-51FFCP PHASE1:Mm9::chr12:57376690..57376716,-#_da8e811de2c5ebb927b04b23cd71e26cp@chr12:57376690..57376716, -
1.97e-51FFCP PHASE1:Mm9::chr6:72264418..72264441,+#_da8e811de2c5ebb927b04b23cd71e26cp@chr6:72264418..72264441, +
1.97e-51FFCP PHASE2:Mm9::chr6:72263977..72263993,+#_da8e811de2c5ebb927b04b23cd71e26cp@chr6:72263977..72263993, +
1.97e-51FFCP PHASE1:Mm9::chr16:19706386..19706390,-#_da8e811de2c5ebb927b04b23cd71e26cp4@Lamp3
2.21e-51FFCP PHASE1:Mm9::chr6:72264609..72264653,-#_060ad69b9fab15f934603d1783d9dc8bp@chr6:72264609..72264653, -
2.21e-51FFCP PHASE2:Mm9::chr6:72264609..72264653,-#_060ad69b9fab15f934603d1783d9dc8bp@chr6:72264609..72264653, -
2.47e-51FFCP PHASE2:Mm9::chr6:129378567..129378573,-#_60d31842c16e39655fdf7f2ab10462f8p@chr6:129378567..129378573, -
2.47e-51FFCP PHASE1:Mm9::chr6:129378567..129378573,-#_60d31842c16e39655fdf7f2ab10462f8p@chr6:129378567..129378573, -
3.74e-51FFCP PHASE2:Mm9::chr3:122432836..122432847,+#_1371e4046b37ba645a2f4bd9d56d595dp16@Pde5a
3.74e-51FFCP PHASE1:Mm9::chr3:122432836..122432847,+#_1371e4046b37ba645a2f4bd9d56d595dp16@Pde5a
5.44e-51FFCP PHASE2:Mm9::chr12:57637595..57637608,-#_b29d61876da7e7d634b7289010705f2ap7@Nkx2-1
5.44e-51FFCP PHASE1:Mm9::chr12:57637595..57637608,-#_b29d61876da7e7d634b7289010705f2ap7@Nkx2-1

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