UBERON:0002360: Difference between revisions
From FANTOM5_SSTAR
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|id=UBERON:0002360
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|def="Membrane organ that surrounds the brain and the spinal cord // Wikipedia: system of membranes which envelops the...") |
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|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:16, 15 June 2012
| Name: | meninx | ||
|---|---|---|---|
| Definition: | "Membrane organ that surrounds the brain and the spinal cord // Wikipedia: system of membranes which envelops the central nervous system. Whereas cyclostomes and fishes only have a single envelope called the primitive meninx, amphibians have two layers, consisting of an outer dura mater which is extremely dense and protective, and a pia-arachnoid or secondary meninx which is more delicate and vascular. Mammals have three meninges: pia mater (which follows all the convolutions of the brain and is the most interior), the arachnoid layer (which is delicate and sends strands to the pia mater), and the dura mater (the outer, more protective meninx). The area between the dura mater and the arachnoid layer is called the subdural space; the area between the arachnoid layer is called the subarachnoid space. An additional layer of tissue lies between the two hemispheres of the cerebrum and is called the falx cerebri. " Wikipedia:Meninx | ||
| Xrefs: |
| ||
| Synonyms: | "meninges" EXACT PLURAL [] | ||
| Comments: | Editor note: consider separate term for meninges aka collection of meninges. Note in EHDAA2 pia mater etc are part of the meninges | ||
| Alt_id: | UBERON:FMA_9589-MA_0001113 | ||
| Subset: |
organ_slim uberon_slim vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000094(membrane organ),UBERON:0004120(mesoderm-derived structure),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0000926(mesoderm),UBERON:0002342(neural crest),UBERON:0007645(future meninx) |
| part_of: | UBERON:0001017(central nervous system) |
Children
| is a: | UBERON:0000391 (leptomeninx),UBERON:0002363 (dura mater),UBERON:0010115 (future dura mater) |
|---|---|
| derives from: | FF:0010188 (human cerebral meninges - adult sample) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10041-101F5 (dura mater, adult, donor1)
- 10188-103D8 (cerebral meninges, adult)
- 10265-104D4
- 10279-104E9
- 10293-104G5
- 10307-104I1
- 10321-105A6
- 10335-105C2
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002360 (meninx), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.75e-130 | FFCP PHASE1:Hg19::chr6:55740051..55740056,-#_b01e53c867af9c4f756a02f351416a82 | p5@BMP5 |
| 1.75e-130 | FFCP PHASE2:Hg19::chr6:55740051..55740056,-#_b01e53c867af9c4f756a02f351416a82 | p5@BMP5 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:112931435..112931445,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr3:112931435..112931445, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr4:154712764..154712772,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr4:154712764..154712772, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:45234395..45234400,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr2:45234395..45234400, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:43349847..43349852,+#_2540e27173afd3eddb1e488ae9563bbb | p@chr8:43349847..43349852, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:39892092..39892099,+#_2540e27173afd3eddb1e488ae9563bbb | p@chr5:39892092..39892099, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:78078199..78078208,+#_2540e27173afd3eddb1e488ae9563bbb | p8@C10orf11 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:112931435..112931445,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr3:112931435..112931445, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr4:154712764..154712772,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr4:154712764..154712772, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr5:122434930..122434939,+#_2540e27173afd3eddb1e488ae9563bbb | p@chr5:122434930..122434939, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:43349847..43349852,+#_2540e27173afd3eddb1e488ae9563bbb | p@chr8:43349847..43349852, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:39892092..39892099,+#_2540e27173afd3eddb1e488ae9563bbb | p@chr5:39892092..39892099, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:78078199..78078208,+#_2540e27173afd3eddb1e488ae9563bbb | p8@C10orf11 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr8:48651813..48651830,-#_2540e27173afd3eddb1e488ae9563bbb | p14@CEBPD |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:112931366..112931373,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr3:112931366..112931373, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr5:122434930..122434939,+#_2540e27173afd3eddb1e488ae9563bbb | p@chr5:122434930..122434939, + |
| 1.55e-98 | FFCP PHASE2:Hg19::chr10:79398656..79398666,-#_2540e27173afd3eddb1e488ae9563bbb | p25@KCNMA1 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr8:48651813..48651830,-#_2540e27173afd3eddb1e488ae9563bbb | p14@CEBPD |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:112931366..112931373,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr3:112931366..112931373, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:112931383..112931390,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr3:112931383..112931390, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr10:79398656..79398666,-#_2540e27173afd3eddb1e488ae9563bbb | p25@KCNMA1 |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:217560615..217560623,-#_2540e27173afd3eddb1e488ae9563bbb | p73@IGFBP5 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:112931383..112931390,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr3:112931383..112931390, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr3:112931404..112931414,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr3:112931404..112931414, - |
| 1.55e-98 | FFCP PHASE1:Hg19::chr2:45234395..45234400,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr2:45234395..45234400, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chr2:217560615..217560623,-#_2540e27173afd3eddb1e488ae9563bbb | p73@IGFBP5 |
| 1.55e-98 | FFCP PHASE2:Hg19::chr3:112931404..112931414,-#_2540e27173afd3eddb1e488ae9563bbb | p@chr3:112931404..112931414, - |
| 1.16e-78 | FFCP PHASE1:Hg19::chr2:18695697..18695706,-#_58935e1aaf8f188b7ab0a72e9ee23094 | p@chr2:18695697..18695706, - |
| 1.16e-78 | FFCP PHASE2:Hg19::chr2:18695697..18695706,-#_58935e1aaf8f188b7ab0a72e9ee23094 | p@chr2:18695697..18695706, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr18:14221875..14221879,-#_d349b09c3c0de3f893d0727092ed4cba | p@chr18:14221875..14221879, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr8:43349794..43349803,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr8:43349794..43349803, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr7:115135068..115135092,-#_d349b09c3c0de3f893d0727092ed4cba | p@chr7:115135068..115135092, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr8:72274182..72274188,-#_d349b09c3c0de3f893d0727092ed4cba | p18@EYA1 |
| 2.74e-50 | FFCP PHASE2:Hg19::chr16:73094120..73094122,-#_d349b09c3c0de3f893d0727092ed4cba | p@chr16:73094120..73094122, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr18:14221875..14221879,-#_d349b09c3c0de3f893d0727092ed4cba | p@chr18:14221875..14221879, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr8:72274182..72274188,-#_d349b09c3c0de3f893d0727092ed4cba | p18@EYA1 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr19:2309357..2309359,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr19:2309357..2309359, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr1:66031903..66031907,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr1:66031903..66031907, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr4:154711058..154711075,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr4:154711058..154711075, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr9:23524699..23524703,-#_d349b09c3c0de3f893d0727092ed4cba | p@chr9:23524699..23524703, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr3:147794257..147794262,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr3:147794257..147794262, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr8:43349758..43349771,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr8:43349758..43349771, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr19:2309357..2309359,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr19:2309357..2309359, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr1:66031903..66031907,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr1:66031903..66031907, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr4:154711058..154711075,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr4:154711058..154711075, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr3:147794257..147794262,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr3:147794257..147794262, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr9:23524699..23524703,-#_d349b09c3c0de3f893d0727092ed4cba | p@chr9:23524699..23524703, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr8:43349758..43349771,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr8:43349758..43349771, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr8:43349794..43349803,+#_d349b09c3c0de3f893d0727092ed4cba | p@chr8:43349794..43349803, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr7:115135068..115135092,-#_d349b09c3c0de3f893d0727092ed4cba | p@chr7:115135068..115135092, - |
| 2.74e-50 | FFCP PHASE1:Hg19::chr16:73094120..73094122,-#_d349b09c3c0de3f893d0727092ed4cba | p@chr16:73094120..73094122, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr11:44360838..44360846,+#_0731a0c8f59d4d5e761dfd2fbabbcff1 | p@chr11:44360838..44360846, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:65990750..65990756,+#_0731a0c8f59d4d5e761dfd2fbabbcff1 | p@chr1:65990750..65990756, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:65990750..65990756,+#_0731a0c8f59d4d5e761dfd2fbabbcff1 | p@chr1:65990750..65990756, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chr1:183775501..183775512,+#_0731a0c8f59d4d5e761dfd2fbabbcff1 | p13@RGL1 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr1:183775501..183775512,+#_0731a0c8f59d4d5e761dfd2fbabbcff1 | p13@RGL1 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr11:44360838..44360846,+#_0731a0c8f59d4d5e761dfd2fbabbcff1 | p@chr11:44360838..44360846, + |
| 4.49e-40 | FFCP PHASE1:Hg19::chr9:74167593..74167609,-#_6d0f789fc40014983620cd1204967225 | p@chr9:74167593..74167609, - |
| 4.49e-40 | FFCP PHASE2:Hg19::chr9:74167593..74167609,-#_6d0f789fc40014983620cd1204967225 | p@chr9:74167593..74167609, - |
| 3.28e-37 | FFCP PHASE2:Hg19::chr2:201521549..201521593,+#_ff40207c5e660305c42b25b46ce7b702 | p@chr2:201521549..201521593, + |
| 3.28e-37 | FFCP PHASE1:Hg19::chr2:201521549..201521593,+#_ff40207c5e660305c42b25b46ce7b702 | p@chr2:201521549..201521593, + |
| 3.61e-34 | FFCP PHASE2:Hg19::chr9:23524722..23524736,-#_14396e55d1ce1491a5b19261428e3ba0 | p@chr9:23524722..23524736, - |
| 3.61e-34 | FFCP PHASE1:Hg19::chr9:23524772..23524783,-#_14396e55d1ce1491a5b19261428e3ba0 | p@chr9:23524772..23524783, - |
| 3.61e-34 | FFCP PHASE1:Hg19::chr3:112931461..112931474,-#_14396e55d1ce1491a5b19261428e3ba0 | p@chr3:112931461..112931474, - |
| 3.61e-34 | FFCP PHASE2:Hg19::chr9:23524772..23524783,-#_14396e55d1ce1491a5b19261428e3ba0 | p@chr9:23524772..23524783, - |
| 3.61e-34 | FFCP PHASE1:Hg19::chr2:45715445..45715482,-#_14396e55d1ce1491a5b19261428e3ba0 | p@chr2:45715445..45715482, - |
| 3.61e-34 | FFCP PHASE1:Hg19::chr4:26165179..26165190,+#_14396e55d1ce1491a5b19261428e3ba0 | p47@RBPJ |
| 3.61e-34 | FFCP PHASE2:Hg19::chr3:112931461..112931474,-#_14396e55d1ce1491a5b19261428e3ba0 | p@chr3:112931461..112931474, - |
| 3.61e-34 | FFCP PHASE2:Hg19::chr2:45715445..45715482,-#_14396e55d1ce1491a5b19261428e3ba0 | p@chr2:45715445..45715482, - |
| 3.61e-34 | FFCP PHASE2:Hg19::chr4:26165179..26165190,+#_14396e55d1ce1491a5b19261428e3ba0 | p47@RBPJ |
| 3.61e-34 | FFCP PHASE1:Hg19::chr4:154711263..154711272,+#_14396e55d1ce1491a5b19261428e3ba0 | p@chr4:154711263..154711272, + |
| 3.61e-34 | FFCP PHASE1:Hg19::chr9:23524722..23524736,-#_14396e55d1ce1491a5b19261428e3ba0 | p@chr9:23524722..23524736, - |
| 3.61e-34 | FFCP PHASE2:Hg19::chr4:154711263..154711272,+#_14396e55d1ce1491a5b19261428e3ba0 | p@chr4:154711263..154711272, + |
| 5.04e-34 | FFCP PHASE1:Hg19::chr5:176047686..176047693,-#_df8360237dc497acf7a881b5d0116b4c | p@chr5:176047686..176047693, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr17:53398728..53398764,+#_df8360237dc497acf7a881b5d0116b4c | p@chr17:53398728..53398764, + |
| 5.04e-34 | FFCP PHASE2:Hg19::chr5:176047686..176047693,-#_df8360237dc497acf7a881b5d0116b4c | p@chr5:176047686..176047693, - |
| 5.04e-34 | FFCP PHASE1:Hg19::chr5:175223687..175223688,+#_df8360237dc497acf7a881b5d0116b4c | p29@CPLX2 |
| 5.04e-34 | FFCP PHASE1:Hg19::chr1:1914706..1914716,-#_df8360237dc497acf7a881b5d0116b4c | p@chr1:1914706..1914716, - |
| 5.04e-34 | FFCP PHASE2:Hg19::chr17:53398728..53398764,+#_df8360237dc497acf7a881b5d0116b4c | p@chr17:53398728..53398764, + |
| 5.04e-34 | FFCP PHASE2:Hg19::chr5:175223687..175223688,+#_df8360237dc497acf7a881b5d0116b4c | p29@CPLX2 |
| 5.04e-34 | FFCP PHASE2:Hg19::chr1:1914706..1914716,-#_df8360237dc497acf7a881b5d0116b4c | p@chr1:1914706..1914716, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr20:36979501..36979520,-#_90d45e6cd89477fc78d24c803bb851b4 | p@chr20:36979501..36979520, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr11:44360939..44360945,+#_90d45e6cd89477fc78d24c803bb851b4 | p@chr11:44360939..44360945, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr11:44360939..44360945,+#_90d45e6cd89477fc78d24c803bb851b4 | p@chr11:44360939..44360945, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr20:36979501..36979520,-#_90d45e6cd89477fc78d24c803bb851b4 | p@chr20:36979501..36979520, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr2:44903688..44903705,+#_90d45e6cd89477fc78d24c803bb851b4 | p7@CAMKMT |
| 7.05e-34 | FFCP PHASE2:Hg19::chr13:66878571..66878580,-#_90d45e6cd89477fc78d24c803bb851b4 | p@chr13:66878571..66878580, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr2:44903688..44903705,+#_90d45e6cd89477fc78d24c803bb851b4 | p7@CAMKMT |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:157069619..157069633,-#_90d45e6cd89477fc78d24c803bb851b4 | p3@ETV3L |
| 7.05e-34 | FFCP PHASE1:Hg19::chr6:102487198..102487211,+#_90d45e6cd89477fc78d24c803bb851b4 | p@chr6:102487198..102487211, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:157069619..157069633,-#_90d45e6cd89477fc78d24c803bb851b4 | p3@ETV3L |
| 7.05e-34 | FFCP PHASE2:Hg19::chr6:102487198..102487211,+#_90d45e6cd89477fc78d24c803bb851b4 | p@chr6:102487198..102487211, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr13:66878571..66878580,-#_90d45e6cd89477fc78d24c803bb851b4 | p@chr13:66878571..66878580, - |
| 4.04e-31 | FFCP PHASE1:Hg19::chr6:160679846..160679859,-#_f2de405958d03f6aebd97438abc007f2 | p1@SLC22A2 |
| 4.04e-31 | FFCP PHASE2:Hg19::chr6:160679846..160679859,-#_f2de405958d03f6aebd97438abc007f2 | p1@SLC22A2 |
| 1.02e-30 | FFCP PHASE1:Hg19::chr8:17351823..17351832,+#_f388cc85784beec31f5c5acb0f573a8f | p@chr8:17351823..17351832, + |
| 1.02e-30 | FFCP PHASE2:Hg19::chr8:17351823..17351832,+#_f388cc85784beec31f5c5acb0f573a8f | p@chr8:17351823..17351832, + |
| 4.08e-26 | FFCP PHASE1:Hg19::chr20:4904851..4904855,-#_40f07111a89f762c67eab64c73320543 | p@chr20:4904851..4904855, - |
| 4.08e-26 | FFCP PHASE2:Hg19::chr20:4904851..4904855,-#_40f07111a89f762c67eab64c73320543 | p@chr20:4904851..4904855, - |
