Personal tools

UBERON:0003704: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0003704 |name=intrahepatic bile duct |namespace= |def="the passages within the liver for the conveyance of bile." [MP:0009497] |xref=FMA:15766;;GAID:2...")
 
No edit summary
Line 21: Line 21:
|part_of=UBERON:0002107
|part_of=UBERON:0002107
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:19, 15 June 2012

Name:intrahepatic bile duct
Definition:"the passages within the liver for the conveyance of bile." [MP:0009497]
Xrefs:
links:

FMA:15766
GAID:287
MA:0001630
MESH:A.03.159.183.158
ncithesaurus:Intrahepatic_Bile_Duct
SCTID:362193005

ZFA:0005169
Synonyms: "bile duct intrahepatic part" EXACT [MA:0001630]
Subset: vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002394(bile duct)
part_of:UBERON:0002107(liver)



Children

is a:UBERON:0001282 (intralobular bile duct)
part of:UBERON:0004823 (intrahepatic bile duct epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003704 (intrahepatic bile duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr2:234545437..234545446,+#_5f3f84df9db817477685d6228117ad78p4@UGT1A10
5.42e-195FFCP PHASE2:Hg19::chr2:234545437..234545446,+#_5f3f84df9db817477685d6228117ad78p4@UGT1A10
5.42e-195FFCP PHASE1:Hg19::chr11:77795673..77795689,-#_5f3f84df9db817477685d6228117ad78p@chr11:77795673..77795689, -
5.42e-195FFCP PHASE2:Hg19::chr21:45826350..45826387,+#_5f3f84df9db817477685d6228117ad78p22@TRPM2
5.42e-195FFCP PHASE1:Hg19::chr21:45826350..45826387,+#_5f3f84df9db817477685d6228117ad78p22@TRPM2
5.42e-195FFCP PHASE1:Hg19::chr2:234545708..234545716,+#_5f3f84df9db817477685d6228117ad78p5@UGT1A10
5.42e-195FFCP PHASE2:Hg19::chr2:234545708..234545716,+#_5f3f84df9db817477685d6228117ad78p5@UGT1A10
5.42e-195FFCP PHASE1:Hg19::chr18:1101041..1101044,+#_5f3f84df9db817477685d6228117ad78p@chr18:1101041..1101044, +
5.42e-195FFCP PHASE1:Hg19::chr13:88008760..88008795,+#_5f3f84df9db817477685d6228117ad78p@chr13:88008760..88008795, +
5.42e-195FFCP PHASE1:Hg19::chr1:207059144..207059147,+#_5f3f84df9db817477685d6228117ad78p@chr1:207059144..207059147, +
5.42e-195FFCP PHASE2:Hg19::chr11:77795673..77795689,-#_5f3f84df9db817477685d6228117ad78p@chr11:77795673..77795689, -
5.42e-195FFCP PHASE2:Hg19::chr1:207059144..207059147,+#_5f3f84df9db817477685d6228117ad78p@chr1:207059144..207059147, +
5.42e-195FFCP PHASE1:Hg19::chr4:166513744..166513789,+#_5f3f84df9db817477685d6228117ad78p@chr4:166513744..166513789, +
5.42e-195FFCP PHASE2:Hg19::chr4:166513744..166513789,+#_5f3f84df9db817477685d6228117ad78p@chr4:166513744..166513789, +
5.42e-195FFCP PHASE2:Hg19::chr18:1101041..1101044,+#_5f3f84df9db817477685d6228117ad78p@chr18:1101041..1101044, +
5.42e-195FFCP PHASE2:Hg19::chr13:88008760..88008795,+#_5f3f84df9db817477685d6228117ad78p@chr13:88008760..88008795, +
5.42e-195FFCP PHASE1:Hg19::chr2:234545407..234545408,+#_5f3f84df9db817477685d6228117ad78p9@UGT1A10
5.42e-195FFCP PHASE2:Hg19::chr2:234545407..234545408,+#_5f3f84df9db817477685d6228117ad78p9@UGT1A10
9.37e-99FFCP PHASE1:Hg19::chr6:32522832..32522842,-#_f193972bbb65bd97331ba8abfdd14acbp@chr6:32522832..32522842, -
9.37e-99FFCP PHASE1:Hg19::chr2:158155402..158155409,-#_f193972bbb65bd97331ba8abfdd14acbp3@ENST00000410472
9.37e-99FFCP PHASE2:Hg19::chr2:158155402..158155409,-#_f193972bbb65bd97331ba8abfdd14acbp3@ENST00000410472
9.37e-99FFCP PHASE1:Hg19::chr11:73874637..73874639,+#_f193972bbb65bd97331ba8abfdd14acbp@chr11:73874637..73874639, +
9.37e-99FFCP PHASE1:Hg19::chr13:98605781..98605792,+#_f193972bbb65bd97331ba8abfdd14acbp34@IPO5
9.37e-99FFCP PHASE2:Hg19::chr11:73874637..73874639,+#_f193972bbb65bd97331ba8abfdd14acbp@chr11:73874637..73874639, +
9.37e-99FFCP PHASE1:Hg19::chr5:52786654..52786665,-#_f193972bbb65bd97331ba8abfdd14acbp@chr5:52786654..52786665, -
9.37e-99FFCP PHASE2:Hg19::chr5:52786654..52786665,-#_f193972bbb65bd97331ba8abfdd14acbp@chr5:52786654..52786665, -
9.37e-99FFCP PHASE2:Hg19::chr13:98605781..98605792,+#_f193972bbb65bd97331ba8abfdd14acbp34@IPO5
9.37e-99FFCP PHASE2:Hg19::chr6:32522832..32522842,-#_f193972bbb65bd97331ba8abfdd14acbp@chr6:32522832..32522842, -
2.55e-98FFCP PHASE1:Hg19::chr9:26936427..26936432,-#_3a3852674066ad035c6857506a88baaep@chr9:26936427..26936432, -
2.55e-98FFCP PHASE2:Hg19::chr9:26936427..26936432,-#_3a3852674066ad035c6857506a88baaep@chr9:26936427..26936432, -
2.55e-98FFCP PHASE2:Hg19::chrX:147062891..147062896,+#_3a3852674066ad035c6857506a88baaep3@FMR1NB
2.55e-98FFCP PHASE1:Hg19::chrX:147062891..147062896,+#_3a3852674066ad035c6857506a88baaep3@FMR1NB
2.55e-98FFCP PHASE1:Hg19::chr11:7904519..7904534,-#_3a3852674066ad035c6857506a88baaep1@ENST00000529488, p1@ENST00000533634
2.55e-98FFCP PHASE1:Hg19::chr2:158005569..158005571,-#_3a3852674066ad035c6857506a88baaep@chr2:158005569..158005571, -
2.55e-98FFCP PHASE2:Hg19::chr2:158005569..158005571,-#_3a3852674066ad035c6857506a88baaep@chr2:158005569..158005571, -
2.55e-98FFCP PHASE2:Hg19::chr11:7904519..7904534,-#_3a3852674066ad035c6857506a88baaep1@ENST00000529488, p1@ENST00000533634
1.23e-66FFCP PHASE2:Hg19::chr15:32969649..32969656,+#_f690f83f672dc35bb5466b9a99955ce9p14@SCG5
1.23e-66FFCP PHASE1:Hg19::chr6:117747000..117747010,-#_f690f83f672dc35bb5466b9a99955ce9p9@ROS1
1.23e-66FFCP PHASE2:Hg19::chr6:117747000..117747010,-#_f690f83f672dc35bb5466b9a99955ce9p9@ROS1
1.23e-66FFCP PHASE1:Hg19::chr2:234545393..234545403,+#_f690f83f672dc35bb5466b9a99955ce9p3@UGT1A10
1.23e-66FFCP PHASE2:Hg19::chr2:234545393..234545403,+#_f690f83f672dc35bb5466b9a99955ce9p3@UGT1A10
1.23e-66FFCP PHASE1:Hg19::chr15:32969649..32969656,+#_f690f83f672dc35bb5466b9a99955ce9p14@SCG5
1.23e-66FFCP PHASE2:Hg19::chr4:33469231..33469240,+#_f690f83f672dc35bb5466b9a99955ce9p@chr4:33469231..33469240, +
1.23e-66FFCP PHASE1:Hg19::chr4:33469231..33469240,+#_f690f83f672dc35bb5466b9a99955ce9p@chr4:33469231..33469240, +
2.39e-66FFCP PHASE2:Hg19::chr4:33469257..33469268,+#_4a2256a3c3b441decb6c33b48e82a305p@chr4:33469257..33469268, +
2.39e-66FFCP PHASE1:Hg19::chr4:33469257..33469268,+#_4a2256a3c3b441decb6c33b48e82a305p@chr4:33469257..33469268, +
4.66e-66FFCP PHASE1:Hg19::chr22:49769903..49769910,+#_20183149fb691be78de7d874338bafe9p@chr22:49769903..49769910, +
4.66e-66FFCP PHASE2:Hg19::chr22:49769903..49769910,+#_20183149fb691be78de7d874338bafe9p@chr22:49769903..49769910, +
1.46e-50FFCP PHASE1:Hg19::chr6:72255927..72255937,+#_d7c1464ce7eb9ac2895313c2ad47fb4cp@chr6:72255927..72255937, +
1.46e-50FFCP PHASE1:Hg19::chr18:514455..514467,+#_d7c1464ce7eb9ac2895313c2ad47fb4cp@chr18:514455..514467, +
1.46e-50FFCP PHASE2:Hg19::chr3:106556772..106556810,-#_d7c1464ce7eb9ac2895313c2ad47fb4cp@chr3:106556772..106556810, -
1.46e-50FFCP PHASE2:Hg19::chr6:32522809..32522827,-#_d7c1464ce7eb9ac2895313c2ad47fb4cp@chr6:32522809..32522827, -
1.46e-50FFCP PHASE1:Hg19::chr3:106556772..106556810,-#_d7c1464ce7eb9ac2895313c2ad47fb4cp@chr3:106556772..106556810, -
1.46e-50FFCP PHASE1:Hg19::chr6:32522809..32522827,-#_d7c1464ce7eb9ac2895313c2ad47fb4cp@chr6:32522809..32522827, -
1.46e-50FFCP PHASE2:Hg19::chr6:72255927..72255937,+#_d7c1464ce7eb9ac2895313c2ad47fb4cp@chr6:72255927..72255937, +
1.46e-50FFCP PHASE2:Hg19::chr18:514455..514467,+#_d7c1464ce7eb9ac2895313c2ad47fb4cp@chr18:514455..514467, +
2.42e-50FFCP PHASE2:Hg19::chr11:77794459..77794475,+#_8dee6300c577ea5b040c52ba583fb7a0p@chr11:77794459..77794475, +
2.42e-50FFCP PHASE2:Hg19::chr4:5526611..5526614,-#_8dee6300c577ea5b040c52ba583fb7a0p@chr4:5526611..5526614, -
2.42e-50FFCP PHASE1:Hg19::chr4:5526611..5526614,-#_8dee6300c577ea5b040c52ba583fb7a0p@chr4:5526611..5526614, -
2.42e-50FFCP PHASE1:Hg19::chr2:187867941..187867952,+#_8dee6300c577ea5b040c52ba583fb7a0p1@ENST00000453517
2.42e-50FFCP PHASE2:Hg19::chr2:187867941..187867952,+#_8dee6300c577ea5b040c52ba583fb7a0p1@ENST00000453517
2.42e-50FFCP PHASE1:Hg19::chr11:77794459..77794475,+#_8dee6300c577ea5b040c52ba583fb7a0p@chr11:77794459..77794475, +
3.99e-50FFCP PHASE2:Hg19::chr21:29774431..29774441,-#_35bccda86283f6ff85226dca72f64b23p@chr21:29774431..29774441, -
3.99e-50FFCP PHASE1:Hg19::chr21:29774431..29774441,-#_35bccda86283f6ff85226dca72f64b23p@chr21:29774431..29774441, -
3.99e-50FFCP PHASE1:Hg19::chr22:49769966..49769971,+#_35bccda86283f6ff85226dca72f64b23p@chr22:49769966..49769971, +
3.99e-50FFCP PHASE2:Hg19::chr22:49769966..49769971,+#_35bccda86283f6ff85226dca72f64b23p@chr22:49769966..49769971, +
3.99e-50FFCP PHASE2:Hg19::chr21:10597500..10597509,-#_35bccda86283f6ff85226dca72f64b23p2@uc011abv.1
3.99e-50FFCP PHASE1:Hg19::chr21:10597500..10597509,-#_35bccda86283f6ff85226dca72f64b23p2@uc011abv.1
3.99e-50FFCP PHASE1:Hg19::chr11:77792240..77792241,+#_35bccda86283f6ff85226dca72f64b23p@chr11:77792240..77792241, +
3.99e-50FFCP PHASE2:Hg19::chr11:77792240..77792241,+#_35bccda86283f6ff85226dca72f64b23p@chr11:77792240..77792241, +
3.99e-50FFCP PHASE2:Hg19::chr20:50479417..50479427,-#_35bccda86283f6ff85226dca72f64b23p2@ENST00000438154
3.99e-50FFCP PHASE1:Hg19::chr20:50479417..50479427,-#_35bccda86283f6ff85226dca72f64b23p2@ENST00000438154
6.58e-50FFCP PHASE1:Hg19::chr5:5146235..5146246,+#_26333e8591f41cbf8938445f024aecc7p7@ADAMTS16
6.58e-50FFCP PHASE2:Hg19::chr5:5146235..5146246,+#_26333e8591f41cbf8938445f024aecc7p7@ADAMTS16
6.58e-50FFCP PHASE2:Hg19::chr12:19928351..19928358,+#_26333e8591f41cbf8938445f024aecc7p2@ENST00000535764
6.58e-50FFCP PHASE2:Hg19::chr21:28899015..28899027,+#_26333e8591f41cbf8938445f024aecc7p@chr21:28899015..28899027, +
6.58e-50FFCP PHASE1:Hg19::chr21:28899015..28899027,+#_26333e8591f41cbf8938445f024aecc7p@chr21:28899015..28899027, +
6.58e-50FFCP PHASE1:Hg19::chrX:70798285..70798290,+#_26333e8591f41cbf8938445f024aecc7p1@ACRC
6.58e-50FFCP PHASE2:Hg19::chrX:70798285..70798290,+#_26333e8591f41cbf8938445f024aecc7p1@ACRC
6.58e-50FFCP PHASE1:Hg19::chr12:19928351..19928358,+#_26333e8591f41cbf8938445f024aecc7p2@ENST00000535764
6.62e-41FFCP PHASE1:Hg19::chr3:98275000..98275016,-#_5509ce53096dc11048723ee444ed73f3p@chr3:98275000..98275016, -
6.62e-41FFCP PHASE2:Hg19::chr6:75912602..75912613,-#_5509ce53096dc11048723ee444ed73f3p25@COL12A1
6.62e-41FFCP PHASE2:Hg19::chr3:98275000..98275016,-#_5509ce53096dc11048723ee444ed73f3p@chr3:98275000..98275016, -
6.62e-41FFCP PHASE1:Hg19::chr6:75912602..75912613,-#_5509ce53096dc11048723ee444ed73f3p25@COL12A1
6.62e-41FFCP PHASE2:Hg19::chr18:514484..514495,+#_5509ce53096dc11048723ee444ed73f3p@chr18:514484..514495, +
6.62e-41FFCP PHASE1:Hg19::chr18:1099004..1099011,+#_5509ce53096dc11048723ee444ed73f3p@chr18:1099004..1099011, +
6.62e-41FFCP PHASE1:Hg19::chr2:158155450..158155474,-#_5509ce53096dc11048723ee444ed73f3p1@ENST00000410472
6.62e-41FFCP PHASE2:Hg19::chr2:158155450..158155474,-#_5509ce53096dc11048723ee444ed73f3p1@ENST00000410472
6.62e-41FFCP PHASE2:Hg19::chr18:1099004..1099011,+#_5509ce53096dc11048723ee444ed73f3p@chr18:1099004..1099011, +
6.62e-41FFCP PHASE1:Hg19::chr2:38402050..38402059,+#_5509ce53096dc11048723ee444ed73f3p@chr2:38402050..38402059, +
6.62e-41FFCP PHASE2:Hg19::chr2:38402050..38402059,+#_5509ce53096dc11048723ee444ed73f3p@chr2:38402050..38402059, +
6.62e-41FFCP PHASE1:Hg19::chr4:166513830..166513834,+#_5509ce53096dc11048723ee444ed73f3p@chr4:166513830..166513834, +
6.62e-41FFCP PHASE2:Hg19::chr4:166513830..166513834,+#_5509ce53096dc11048723ee444ed73f3p@chr4:166513830..166513834, +
6.62e-41FFCP PHASE1:Hg19::chr18:514484..514495,+#_5509ce53096dc11048723ee444ed73f3p@chr18:514484..514495, +
6.62e-41FFCP PHASE2:Hg19::chrX:147062877..147062885,+#_5509ce53096dc11048723ee444ed73f3p2@FMR1NB
6.62e-41FFCP PHASE1:Hg19::chrX:147062877..147062885,+#_5509ce53096dc11048723ee444ed73f3p2@FMR1NB
9.91e-41FFCP PHASE2:Hg19::chr12:127737083..127737103,-#_eb96ce3891695b7054abd246abec08ffp@chr12:127737083..127737103, -
9.91e-41FFCP PHASE2:Hg19::chr6:67772946..67772961,+#_eb96ce3891695b7054abd246abec08ffp@chr6:67772946..67772961, +
9.91e-41FFCP PHASE1:Hg19::chr6:67772946..67772961,+#_eb96ce3891695b7054abd246abec08ffp@chr6:67772946..67772961, +
9.91e-41FFCP PHASE2:Hg19::chr6:32515336..32515343,-#_eb96ce3891695b7054abd246abec08ffp@chr6:32515336..32515343, -

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003704&oldid=1833000"