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Revision as of 17:19, 15 June 2012

Name:gut epithelium
Definition:"An epithelium that is part of a digestive tract [Obol]." [OBOL:automatic]
Xrefs:
links:

BTO:0000956
EHDAA2:0004567
ncithesaurus:Gut_Epithelium
XAO:0003200

ZFA:0005123
Synonyms: "digestive tract epithelial tissue" EXACT [OBOL:automatic]
"digestive tract epithelium" EXACT [OBOL:automatic]
"epithelial tissue of digestive tract" EXACT [OBOL:automatic]
"epithelial tissue of gut" EXACT [OBOL:automatic]
"epithelial tissue of lower gastrointestinal tract" EXACT [OBOL:automatic]
"epithelium of digestive tract" EXACT [OBOL:automatic]
"epithelium of gut" EXACT [OBOL:automatic]
"epithelium of lower gastrointestinal tract" EXACT [OBOL:automatic]
"gut epithelial tissue" EXACT [OBOL:automatic]
"lower gastrointestinal tract epithelial tissue" EXACT [OBOL:automatic]
"lower gastrointestinal tract epithelium" EXACT [OBOL:automatic]

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0005911(endo-epithelium)
part_of:UBERON:0001555(digestive tract)



Children

is a:UBERON:0001277 (intestinal epithelium),UBERON:0002424 (oral epithelium),UBERON:0003351 (pharyngeal epithelium),UBERON:0003353 (epithelium of hindgut),UBERON:0004809 (salivary gland epithelium),UBERON:0009497 (epithelium of foregut-midgut junction),UBERON:0012481 (cloacal epithelium),UBERON:0015833 (foregut epithelium)
part of:CL:0000682 (M cell of gut),UBERON:0009497 (epithelium of foregut-midgut junction),UBERON:0009722 (entire pharyngeal arch endoderm),UBERON:0009846 (embryonic cloacal epithelium)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003929 (gut epithelium), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
8.73e-40FFCP PHASE2:Hg19::chr6:8652489..8652515,+#_247ba57cce5f63a858567239f12c76aap1@HULC
8.73e-40FFCP PHASE1:Hg19::chr6:8652489..8652515,+#_247ba57cce5f63a858567239f12c76aap1@HULC
1.57e-36FFCP PHASE1:Hg19::chr10:101841398..101841415,-#_10f577aed3495434c39c8802c1a70eb2p2@CPN1
1.57e-36FFCP PHASE2:Hg19::chr10:101841398..101841415,-#_10f577aed3495434c39c8802c1a70eb2p2@CPN1
1.73e-36FFCP PHASE1:Hg19::chr10:101841588..101841632,-#_0c57ea4035292c210697e6e12bcd33dbp1@CPN1
1.73e-36FFCP PHASE2:Hg19::chr10:101841588..101841632,-#_0c57ea4035292c210697e6e12bcd33dbp1@CPN1
2.65e-36FFCP PHASE2:Mm9::chr14:30823509..30823529,+#_3ce53c320338db13134cbe49e4eb60c6p@chr14:30823509..30823529, +
2.65e-36FFCP PHASE1:Mm9::chr14:30823509..30823529,+#_3ce53c320338db13134cbe49e4eb60c6p@chr14:30823509..30823529, +
3.89e-36FFCP PHASE1:Hg19::chr6:64231600..64231615,+#_c33f4a956f77b440ac2aa77a45b4c896p24@PTP4A1
3.89e-36FFCP PHASE2:Hg19::chr6:64231600..64231615,+#_c33f4a956f77b440ac2aa77a45b4c896p24@PTP4A1
5.11e-34FFCP PHASE2:Hg19::chr12:100867777..100867788,+#_d29fd56b7878596c930fae2299d9a9ddp5@NR1H4
5.11e-34FFCP PHASE1:Hg19::chr12:100867777..100867788,+#_d29fd56b7878596c930fae2299d9a9ddp5@NR1H4
4.28e-33FFCP PHASE2:Hg19::chr1:161192171..161192185,-#_f1992340bb88835d7ae1668aa7f909c1p@chr1:161192171..161192185, -
4.28e-33FFCP PHASE1:Hg19::chr1:161192171..161192185,-#_f1992340bb88835d7ae1668aa7f909c1p@chr1:161192171..161192185, -
1.09e-32FFCP PHASE2:Hg19::chr20:10349456..10349475,-#_3b7814aa4e5b7a0052c4dffac81dd535p1@ENST00000421143
1.09e-32FFCP PHASE1:Hg19::chr20:10349456..10349475,-#_3b7814aa4e5b7a0052c4dffac81dd535p1@ENST00000421143
7.4e-31FFCP PHASE1:Hg19::chr17:7082668..7082725,-#_58403b75bde1eaefaa8cd147962b3cb9p1@ASGR1
7.4e-31FFCP PHASE2:Hg19::chr17:7082668..7082725,-#_58403b75bde1eaefaa8cd147962b3cb9p1@ASGR1
9.27e-31FFCP PHASE1:Hg19::chr1:161192149..161192162,-#_44fc11f8d3449bde7b4744d3c7d99280p@chr1:161192149..161192162, -
9.27e-31FFCP PHASE2:Hg19::chr1:161192149..161192162,-#_44fc11f8d3449bde7b4744d3c7d99280p@chr1:161192149..161192162, -
9.81e-31FFCP PHASE1:Hg19::chr1:54359854..54359866,+#_df63937860fae7e31f953e72f651c8f9p1@DIO1
9.81e-31FFCP PHASE2:Hg19::chr1:54359854..54359866,+#_df63937860fae7e31f953e72f651c8f9p1@DIO1
1.52e-30FFCP PHASE2:Hg19::chr1:177939154..177939204,-#_d2e48b73e3c9ba60f161ec2021bc3c80p4@SEC16B
1.52e-30FFCP PHASE1:Hg19::chr1:177939154..177939204,-#_d2e48b73e3c9ba60f161ec2021bc3c80p4@SEC16B
1.82e-30FFCP PHASE2:Hg19::chr22:37505474..37505478,-#_158494b8e7750e1a0781fe2bcea9de20p3@TMPRSS6
1.82e-30FFCP PHASE1:Hg19::chr22:37505474..37505478,-#_158494b8e7750e1a0781fe2bcea9de20p3@TMPRSS6
6.95e-30FFCP PHASE1:Hg19::chr17:7082560..7082572,-#_4a2122f09a464e03b09e91aed0a326d2p4@ASGR1
6.95e-30FFCP PHASE2:Hg19::chr17:7082560..7082572,-#_4a2122f09a464e03b09e91aed0a326d2p4@ASGR1
8.03e-30FFCP PHASE2:Hg19::chr19:56653064..56653103,+#_9b50828d80acc3b53ded9d31acf3f79fp1@AK124209
8.03e-30FFCP PHASE1:Hg19::chr19:56653064..56653103,+#_9b50828d80acc3b53ded9d31acf3f79fp1@AK124209
8.91e-30FFCP PHASE2:Hg19::chr4:155528001..155528060,-#_536b715cd9223e91192b08b2c4fbfe6bp@chr4:155528001..155528060, -
8.91e-30FFCP PHASE1:Hg19::chr4:155533277..155533357,-#_536b715cd9223e91192b08b2c4fbfe6bp2@FGG
8.91e-30FFCP PHASE1:Hg19::chr4:155528001..155528060,-#_536b715cd9223e91192b08b2c4fbfe6bp@chr4:155528001..155528060, -
8.91e-30FFCP PHASE2:Hg19::chr4:155533277..155533357,-#_536b715cd9223e91192b08b2c4fbfe6bp2@FGG
8.91e-30FFCP PHASE1:Hg19::chr1:161192118..161192141,-#_536b715cd9223e91192b08b2c4fbfe6bp@chr1:161192118..161192141, -
8.91e-30FFCP PHASE2:Hg19::chr4:155530853..155530879,-#_536b715cd9223e91192b08b2c4fbfe6bp3@FGG
8.91e-30FFCP PHASE1:Hg19::chr4:155530853..155530879,-#_536b715cd9223e91192b08b2c4fbfe6bp3@FGG
8.91e-30FFCP PHASE2:Hg19::chr1:161192118..161192141,-#_536b715cd9223e91192b08b2c4fbfe6bp@chr1:161192118..161192141, -
1.01e-29FFCP PHASE1:Hg19::chr11:63137251..63137267,+#_4f6251bf32de876a966e60587cbaf63cp1@SLC22A9
1.01e-29FFCP PHASE2:Hg19::chr11:63137251..63137267,+#_4f6251bf32de876a966e60587cbaf63cp1@SLC22A9
1.04e-29FFCP PHASE2:Hg19::chr17:7017634..7017649,-#_2fcd01c288c8f54fc390e6964883c3e4p7@ASGR2
1.04e-29FFCP PHASE1:Hg19::chr17:7017634..7017649,-#_2fcd01c288c8f54fc390e6964883c3e4p7@ASGR2
1.19e-29FFCP PHASE1:Hg19::chr14:94759595..94759613,-#_00580a87423c832adc104febcf726bb9p2@SERPINA10
1.19e-29FFCP PHASE2:Hg19::chr14:94759595..94759613,-#_00580a87423c832adc104febcf726bb9p2@SERPINA10
1.32e-29FFCP PHASE1:Hg19::chr14:94759576..94759594,-#_c90401270bc5dafed23e040361c2370cp3@SERPINA10
1.32e-29FFCP PHASE2:Hg19::chr14:94759576..94759594,-#_c90401270bc5dafed23e040361c2370cp3@SERPINA10
2.94e-29FFCP PHASE2:Hg19::chr16:85832119..85832145,+#_d8018e9919e0cc6020358515c1a90bc7p@chr16:85832119..85832145, +
2.94e-29FFCP PHASE1:Hg19::chr16:85832119..85832145,+#_d8018e9919e0cc6020358515c1a90bc7p@chr16:85832119..85832145, +
3.04e-29FFCP PHASE1:Hg19::chr8:144417558..144417572,-#_adfeccf5dc6b3c2ecc9ac806fb88cd72p7@TOP1MT
3.04e-29FFCP PHASE2:Hg19::chr8:144417558..144417572,-#_adfeccf5dc6b3c2ecc9ac806fb88cd72p7@TOP1MT
3.04e-29FFCP PHASE2:Hg19::chr2:21233797..21233804,-#_adfeccf5dc6b3c2ecc9ac806fb88cd72p58@APOB
3.04e-29FFCP PHASE1:Hg19::chr2:21233797..21233804,-#_adfeccf5dc6b3c2ecc9ac806fb88cd72p58@APOB
2.05e-28FFCP PHASE1:Hg19::chr4:70361615..70361631,-#_4b66793e2b43f79c6b44d29c1003b7ddp1@UGT2B4
2.05e-28FFCP PHASE2:Hg19::chr4:70361615..70361631,-#_4b66793e2b43f79c6b44d29c1003b7ddp1@UGT2B4
2.17e-28FFCP PHASE1:Hg19::chr12:24191262..24191291,-#_6157cac7042ad865bb99f0d47a5763f3p@chr12:24191262..24191291, -
2.17e-28FFCP PHASE2:Hg19::chr12:24191262..24191291,-#_6157cac7042ad865bb99f0d47a5763f3p@chr12:24191262..24191291, -
2.82e-28FFCP PHASE1:Hg19::chr17:7017968..7018021,-#_f3d01571ee7fdc0d2aaf112940371178p1@ASGR2
2.82e-28FFCP PHASE2:Hg19::chr17:7017968..7018021,-#_f3d01571ee7fdc0d2aaf112940371178p1@ASGR2
6.93e-28FFCP PHASE1:Hg19::chr14:94759548..94759571,-#_d84bb538a768b21c479826d62251f4cep1@SERPINA10
6.93e-28FFCP PHASE2:Hg19::chr14:94759548..94759571,-#_d84bb538a768b21c479826d62251f4cep1@SERPINA10
7.03e-28FFCP PHASE2:Hg19::chr12:100867695..100867706,+#_efb40074455bd80e8222372d96cc65ffp6@NR1H4
7.03e-28FFCP PHASE1:Hg19::chr12:100867695..100867706,+#_efb40074455bd80e8222372d96cc65ffp6@NR1H4
8.24e-28FFCP PHASE2:Hg19::chr13:113760134..113760150,+#_f905d6e6a07c2caf11324e5446b7d8afp2@F7
8.24e-28FFCP PHASE1:Hg19::chr13:113760134..113760150,+#_f905d6e6a07c2caf11324e5446b7d8afp2@F7
1.62e-27FFCP PHASE1:Hg19::chr6:64231645..64231678,+#_688411b0213291552e1bdd1f878e39eep6@PTP4A1
1.62e-27FFCP PHASE2:Hg19::chr6:64231645..64231678,+#_688411b0213291552e1bdd1f878e39eep6@PTP4A1
1.87e-27FFCP PHASE1:Hg19::chr2:201171064..201171071,+#_a52f124f4de1b40367bd6b0fc9013721p19@SPATS2L
1.87e-27FFCP PHASE2:Hg19::chr2:201171064..201171071,+#_a52f124f4de1b40367bd6b0fc9013721p19@SPATS2L
2.04e-27FFCP PHASE2:Hg19::chr17:4692335..4692344,+#_2ae50247c76eb95521a85338e7adcd7bp3@GLTPD2
2.04e-27FFCP PHASE1:Hg19::chr17:4692335..4692344,+#_2ae50247c76eb95521a85338e7adcd7bp3@GLTPD2
2.4e-27FFCP PHASE2:Mm9::chr11:60622345..60622377,-#_f8e162425dff726faeb3d4438b703fbbp@chr11:60622345..60622377, -
2.4e-27FFCP PHASE1:Mm9::chr11:60622345..60622377,-#_f8e162425dff726faeb3d4438b703fbbp@chr11:60622345..60622377, -
2.64e-27FFCP PHASE1:Hg19::chr4:74283297..74283332,-#_badf688342dfef2fd79ad41b397dc506p@chr4:74283297..74283332, -
2.64e-27FFCP PHASE2:Hg19::chr4:74283297..74283332,-#_badf688342dfef2fd79ad41b397dc506p@chr4:74283297..74283332, -
5.31e-27FFCP PHASE2:Mm9::chr5:90897694..90897705,+#_1d7686694a63f664d9d154a35c4d7f01p@chr5:90897694..90897705, +
5.31e-27FFCP PHASE1:Mm9::chr5:90897694..90897705,+#_1d7686694a63f664d9d154a35c4d7f01p@chr5:90897694..90897705, +
5.91e-27FFCP PHASE1:Mm9::chr8:131012371..131012382,-#_0f7ed8479882d5c49ce892870b33a56cp2@uc009nzu.1
5.91e-27FFCP PHASE2:Mm9::chr6:41483037..41483046,+#_0f7ed8479882d5c49ce892870b33a56cp8@uc009bpa.1
5.91e-27FFCP PHASE1:Mm9::chr6:41483037..41483046,+#_0f7ed8479882d5c49ce892870b33a56cp8@uc009bpa.1
5.91e-27FFCP PHASE2:Mm9::chr8:131012371..131012382,-#_0f7ed8479882d5c49ce892870b33a56cp2@uc009nzu.1
6.71e-27FFCP PHASE2:Mm9::chr19:25169885..25169900,+#_fc931cbc585e36789b4997912a868d1cp@chr19:25169885..25169900, +
6.71e-27FFCP PHASE1:Mm9::chr19:25169885..25169900,+#_fc931cbc585e36789b4997912a868d1cp@chr19:25169885..25169900, +
6.76e-27FFCP PHASE1:Mm9::chr6:41483113..41483131,+#_8df56433f1a80b9679e984cad4d36c1ep4@uc009bpa.1
6.76e-27FFCP PHASE2:Mm9::chr6:41483113..41483131,+#_8df56433f1a80b9679e984cad4d36c1ep4@uc009bpa.1
7.17e-27FFCP PHASE1:Mm9::chr7:121912281..121912295,+#_868402581bde6ac428b4c4aae6ab7637p6@Insc
7.17e-27FFCP PHASE2:Mm9::chr7:121912281..121912295,+#_868402581bde6ac428b4c4aae6ab7637p6@Insc
7.25e-27FFCP PHASE1:Hg19::chr22:50826072..50826087,+#_f0251b5b0834c97b323fbe527497ef1ep@chr22:50826072..50826087, +
7.25e-27FFCP PHASE2:Hg19::chr22:50826072..50826087,+#_f0251b5b0834c97b323fbe527497ef1ep@chr22:50826072..50826087, +
1.11e-26FFCP PHASE2:Hg19::chr8:17752845..17752864,-#_4904c590a009562c45b8ed1e59bb6c02p2@FGL1
1.11e-26FFCP PHASE1:Hg19::chr8:17752845..17752864,-#_4904c590a009562c45b8ed1e59bb6c02p2@FGL1
1.47e-26FFCP PHASE2:Hg19::chr10:54531372..54531384,-#_14109702d381520708601089fc8f3713p1@MBL2
1.47e-26FFCP PHASE1:Hg19::chr10:54531372..54531384,-#_14109702d381520708601089fc8f3713p1@MBL2
1.5e-26FFCP PHASE2:Hg19::chr11:116706961..116706976,-#_3bcdda17208e2a9004d45d6566bd5a50p@chr11:116706961..116706976, -
1.5e-26FFCP PHASE1:Hg19::chr11:116706961..116706976,-#_3bcdda17208e2a9004d45d6566bd5a50p@chr11:116706961..116706976, -
1.57e-26FFCP PHASE2:Hg19::chr17:7082573..7082598,-#_9dd6784028cb07d643cd021901bfe5c6p5@ASGR1
1.57e-26FFCP PHASE1:Hg19::chrX:153769426..153769436,+#_9dd6784028cb07d643cd021901bfe5c6p18@IKBKG
1.57e-26FFCP PHASE1:Hg19::chr17:7082573..7082598,-#_9dd6784028cb07d643cd021901bfe5c6p5@ASGR1
1.57e-26FFCP PHASE2:Hg19::chrX:153769426..153769436,+#_9dd6784028cb07d643cd021901bfe5c6p18@IKBKG
1.77e-26FFCP PHASE1:Hg19::chr4:155527893..155527907,-#_f4c8549389df0013d007cb3659ccdbc2p@chr4:155527893..155527907, -
1.77e-26FFCP PHASE2:Hg19::chr4:155527893..155527907,-#_f4c8549389df0013d007cb3659ccdbc2p@chr4:155527893..155527907, -

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