UBERON:0004128: Difference between revisions
From FANTOM5_SSTAR
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|id=UBERON:0004128
|name=optic vesicle
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|def="The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup[GO]. Portio...") |
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Revision as of 17:19, 15 June 2012
| Name: | optic vesicle | ||
|---|---|---|---|
| Definition: | "The optic vesicle is the evagination of neurectoderm that precedes formation of the optic cup[GO]. Portion of tissue that is comprised of neuroepitheium which has pinched off from the anterior neural keel and will form the optic cup[ZFA]." [GO:0003404, Wikipedia:Optic_vesicles] | ||
| Xrefs: |
| ||
| Synonyms: | "evagination" RELATED [] | ||
| Comments: | Genes: Six3, Pax6, Rx1 are expressed together in the tip of the neural plate [ISBN:9780878932504 "Developmental Biology"] | ||
| Subset: | vertebrate_core |
200px-Gray863.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0003071(eye primordium) |
Children
| develops from: | UBERON:0001769 (iris),UBERON:0003072 (optic cup) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004128 (optic vesicle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:127668442..127668453,+#_081e6863227a6e39750b1a0122c57c6f | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr2:90827760..90827769,+#_081e6863227a6e39750b1a0122c57c6f | p6@Celf1 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622163..3622187,-#_081e6863227a6e39750b1a0122c57c6f | p8@Osbp2 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818263..31818276,+#_081e6863227a6e39750b1a0122c57c6f | p@chr17:31818263..31818276, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532391..77532408,-#_081e6863227a6e39750b1a0122c57c6f | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr4:133799669..133799683,+#_081e6863227a6e39750b1a0122c57c6f | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:3622192..3622225,-#_081e6863227a6e39750b1a0122c57c6f | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31815126..31815139,-#_081e6863227a6e39750b1a0122c57c6f | p@chr17:31815126..31815139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr10:67364011..67364018,-#_081e6863227a6e39750b1a0122c57c6f | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31815126..31815139,-#_081e6863227a6e39750b1a0122c57c6f | p@chr17:31815126..31815139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31818106..31818119,+#_081e6863227a6e39750b1a0122c57c6f | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr11:77532283..77532316,-#_081e6863227a6e39750b1a0122c57c6f | p@chr11:77532283..77532316, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr4:133799669..133799683,+#_081e6863227a6e39750b1a0122c57c6f | p1@E130218I03Rik |
| 1.31e-86 | FFCP PHASE2:Mm9::chr14:118451218..118451221,-#_081e6863227a6e39750b1a0122c57c6f | p4@Dct |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622163..3622187,-#_081e6863227a6e39750b1a0122c57c6f | p8@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31817987..31818013,+#_081e6863227a6e39750b1a0122c57c6f | p@chr17:31817987..31818013, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:127668442..127668453,+#_081e6863227a6e39750b1a0122c57c6f | p@chr10:127668442..127668453, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr14:118451218..118451221,-#_081e6863227a6e39750b1a0122c57c6f | p4@Dct |
| 1.31e-86 | FFCP PHASE1:Mm9::chr3:129525389..129525400,-#_081e6863227a6e39750b1a0122c57c6f | p@chr3:129525389..129525400, - |
| 1.31e-86 | FFCP PHASE1:Mm9::chr9:89697580..89697585,-#_081e6863227a6e39750b1a0122c57c6f | p1@Mir184 |
| 1.31e-86 | FFCP PHASE2:Mm9::chr17:31817987..31818013,+#_081e6863227a6e39750b1a0122c57c6f | p@chr17:31817987..31818013, + |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818263..31818276,+#_081e6863227a6e39750b1a0122c57c6f | p@chr17:31818263..31818276, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr16:21743134..21743139,-#_081e6863227a6e39750b1a0122c57c6f | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532391..77532408,-#_081e6863227a6e39750b1a0122c57c6f | p@chr11:77532391..77532408, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr3:129525389..129525400,-#_081e6863227a6e39750b1a0122c57c6f | p@chr3:129525389..129525400, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr9:89697580..89697585,-#_081e6863227a6e39750b1a0122c57c6f | p1@Mir184 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr10:67364011..67364018,-#_081e6863227a6e39750b1a0122c57c6f | p5@Zfp365 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr2:90827760..90827769,+#_081e6863227a6e39750b1a0122c57c6f | p6@Celf1 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr16:21743134..21743139,-#_081e6863227a6e39750b1a0122c57c6f | p@chr16:21743134..21743139, - |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:3622192..3622225,-#_081e6863227a6e39750b1a0122c57c6f | p3@Osbp2 |
| 1.31e-86 | FFCP PHASE1:Mm9::chr17:31818106..31818119,+#_081e6863227a6e39750b1a0122c57c6f | p@chr17:31818106..31818119, + |
| 1.31e-86 | FFCP PHASE2:Mm9::chr11:77532283..77532316,-#_081e6863227a6e39750b1a0122c57c6f | p@chr11:77532283..77532316, - |
| 2.3e-78 | FFCP PHASE1:Mm9::chr10:127668637..127668650,+#_6b5b733c81d23353b222115c18812150 | p3@LOC100504989, p3@Timeless |
| 2.3e-78 | FFCP PHASE2:Mm9::chr10:127668637..127668650,+#_6b5b733c81d23353b222115c18812150 | p3@LOC100504989, p3@Timeless |
| 2.3e-78 | FFCP PHASE2:Mm9::chr7:64675015..64675028,+#_6b5b733c81d23353b222115c18812150 | p@chr7:64675015..64675028, + |
| 2.3e-78 | FFCP PHASE1:Mm9::chr7:64675015..64675028,+#_6b5b733c81d23353b222115c18812150 | p@chr7:64675015..64675028, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr6:97891135..97891147,+#_1d3f4e8da18b9890b27d634a2a7aa446 | p@chr6:97891135..97891147, + |
| 2.82e-78 | FFCP PHASE1:Mm9::chr2:105509100..105509107,+#_1d3f4e8da18b9890b27d634a2a7aa446 | p6@Pax6 |
| 2.82e-78 | FFCP PHASE2:Mm9::chr2:105509100..105509107,+#_1d3f4e8da18b9890b27d634a2a7aa446 | p6@Pax6 |
| 2.82e-78 | FFCP PHASE2:Mm9::chr6:97891135..97891147,+#_1d3f4e8da18b9890b27d634a2a7aa446 | p@chr6:97891135..97891147, + |
| 3.46e-78 | FFCP PHASE1:Mm9::chr14:49498256..49498278,+#_853aae653feee41b5307b0b9aeb8a1ac | p1@4933429O19Rik |
| 3.46e-78 | FFCP PHASE2:Mm9::chr14:49498256..49498278,+#_853aae653feee41b5307b0b9aeb8a1ac | p1@4933429O19Rik |
| 4.97e-77 | FFCP PHASE1:Mm9::chr2:93906955..93906973,-#_86194975a725ddb50b763593c96cbad4 | p2@Hsd17b12 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690744..112690755,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112690744..112690755, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr8:77582194..77582219,+#_86194975a725ddb50b763593c96cbad4 | p@chr8:77582194..77582219, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112675556..112675574,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:112675556..112675574, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31816514..31816526,+#_86194975a725ddb50b763593c96cbad4 | p@chr17:31816514..31816526, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65146997..65147021,-#_86194975a725ddb50b763593c96cbad4 | p@chr1:65146997..65147021, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr16:56204438..56204451,+#_86194975a725ddb50b763593c96cbad4 | p1@Impg2 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:129525405..129525428,-#_86194975a725ddb50b763593c96cbad4 | p1@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65147224..65147236,-#_86194975a725ddb50b763593c96cbad4 | p@chr1:65147224..65147236, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:38092538..38092550,+#_86194975a725ddb50b763593c96cbad4 | p@chr1:38092538..38092550, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31816584..31816600,+#_86194975a725ddb50b763593c96cbad4 | p@chr17:31816584..31816600, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr11:95705150..95705170,+#_86194975a725ddb50b763593c96cbad4 | p3@Gngt2 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31818629..31818644,+#_86194975a725ddb50b763593c96cbad4 | p@chr17:31818629..31818644, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113506006..113506025,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:113506006..113506025, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31816584..31816600,+#_86194975a725ddb50b763593c96cbad4 | p@chr17:31816584..31816600, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr14:52730585..52730607,+#_86194975a725ddb50b763593c96cbad4 | p1@Rpgrip1 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112698505..112698537,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:112698505..112698537, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:129525435..129525448,-#_86194975a725ddb50b763593c96cbad4 | p2@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65146997..65147021,-#_86194975a725ddb50b763593c96cbad4 | p@chr1:65146997..65147021, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:65149656..65149674,-#_86194975a725ddb50b763593c96cbad4 | p2@Cryga |
| 4.97e-77 | FFCP PHASE1:Mm9::chr9:107964319..107964338,-#_86194975a725ddb50b763593c96cbad4 | p11@Rnf123 |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112692580..112692595,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112692580..112692595, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31818215..31818239,-#_86194975a725ddb50b763593c96cbad4 | p@chr17:31818215..31818239, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr10:127668480..127668491,+#_86194975a725ddb50b763593c96cbad4 | p@chr10:127668480..127668491, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112688342..112688357,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112688342..112688357, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr6:115162924..115162933,+#_86194975a725ddb50b763593c96cbad4 | p@chr6:115162924..115162933, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112688342..112688357,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112688342..112688357, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113506190..113506202,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:113506190..113506202, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr11:77532270..77532280,-#_86194975a725ddb50b763593c96cbad4 | p@chr11:77532270..77532280, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:127668686..127668697,+#_86194975a725ddb50b763593c96cbad4 | p4@LOC100504989, p4@Timeless |
| 4.97e-77 | FFCP PHASE2:Mm9::chr15:36655026..36655032,+#_86194975a725ddb50b763593c96cbad4 | p@chr15:36655026..36655032, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr14:49501519..49501530,-#_86194975a725ddb50b763593c96cbad4 | p@chr14:49501519..49501530, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:152166537..152166579,+#_86194975a725ddb50b763593c96cbad4 | p1@Pdc |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:129525435..129525448,-#_86194975a725ddb50b763593c96cbad4 | p2@Rrh |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112690963..112690994,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112690963..112690994, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112690963..112690994,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112690963..112690994, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr17:31817947..31817965,+#_86194975a725ddb50b763593c96cbad4 | p@chr17:31817947..31817965, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr15:36655026..36655032,+#_86194975a725ddb50b763593c96cbad4 | p@chr15:36655026..36655032, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113507470..113507483,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:113507470..113507483, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112686483..112686494,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112686483..112686494, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr6:115162924..115162933,+#_86194975a725ddb50b763593c96cbad4 | p@chr6:115162924..115162933, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr3:129525452..129525463,-#_86194975a725ddb50b763593c96cbad4 | p3@Rrh |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:112692580..112692595,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112692580..112692595, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr7:29477874..29477889,+#_86194975a725ddb50b763593c96cbad4 | p6@Fbxo27 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31818629..31818644,+#_86194975a725ddb50b763593c96cbad4 | p@chr17:31818629..31818644, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr14:49501519..49501530,-#_86194975a725ddb50b763593c96cbad4 | p@chr14:49501519..49501530, - |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:113507470..113507483,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:113507470..113507483, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:152166537..152166579,+#_86194975a725ddb50b763593c96cbad4 | p1@Pdc |
| 4.97e-77 | FFCP PHASE1:Mm9::chr10:127668799..127668810,+#_86194975a725ddb50b763593c96cbad4 | p5@LOC100504989, p5@Timeless |
| 4.97e-77 | FFCP PHASE2:Mm9::chr5:113504891..113504916,-#_86194975a725ddb50b763593c96cbad4 | p@chr5:113504891..113504916, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr3:129525452..129525463,-#_86194975a725ddb50b763593c96cbad4 | p3@Rrh |
| 4.97e-77 | FFCP PHASE1:Mm9::chr1:38092602..38092616,+#_86194975a725ddb50b763593c96cbad4 | p@chr1:38092602..38092616, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr17:31817947..31817965,+#_86194975a725ddb50b763593c96cbad4 | p@chr17:31817947..31817965, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr8:77582172..77582183,+#_86194975a725ddb50b763593c96cbad4 | p@chr8:77582172..77582183, + |
| 4.97e-77 | FFCP PHASE1:Mm9::chr5:112686483..112686494,+#_86194975a725ddb50b763593c96cbad4 | p@chr5:112686483..112686494, + |
| 4.97e-77 | FFCP PHASE2:Mm9::chr1:65147201..65147212,-#_86194975a725ddb50b763593c96cbad4 | p@chr1:65147201..65147212, - |
| 4.97e-77 | FFCP PHASE2:Mm9::chr2:93906955..93906973,-#_86194975a725ddb50b763593c96cbad4 | p2@Hsd17b12 |
| 4.97e-77 | FFCP PHASE2:Mm9::chr11:95705150..95705170,+#_86194975a725ddb50b763593c96cbad4 | p3@Gngt2 |
