DOID:127: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{DOID
|id=DOID:127
|name=leiomyoma
|namespace=
|def="A cell type benign neoplasm that is a benign tumor of smooth muscle cells." [url:http\://en.wikipedia.org/wiki/Cancer...") |
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|id=DOID:127 | |id=DOID:127 | ||
|name=leiomyoma | |name=leiomyoma | ||
|namespace= | |namespace=disease_ontology | ||
|def="A cell type benign neoplasm that is a benign tumor of smooth muscle cells." [url:http\://en.wikipedia.org/wiki/Cancer, url:http\://en.wikipedia.org/wiki/Leiomyoma] | |def="A cell type benign neoplasm that is a benign tumor of smooth muscle cells." [url:http\://en.wikipedia.org/wiki/Cancer, url:http\://en.wikipedia.org/wiki/Leiomyoma] | ||
|xref= | |xref=MSH:D007889;;NCI:C3157;;SNOMEDCT_2010_1_31:189787000;;SNOMEDCT_2010_1_31:189788005;;SNOMEDCT_2010_1_31:189793008;;UMLS_CUI:C0023267 | ||
|is_a=DOID:0060084 | |is_a=DOID:0060084 | ||
|synonym="leiomyoma" EXACT [CSP2005:2011-3663];;"leiomyoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189788005];;"leiomyomatous neoplasm (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189787000];;"leiomyomatous neoplasm NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189793008];;"leiomyomatous tumor" EXACT [NCI2004_11_17:C3157] | |synonym="leiomyoma" EXACT [CSP2005:2011-3663];;"leiomyoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189788005];;"leiomyomatous neoplasm (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189787000];;"leiomyomatous neoplasm NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189793008];;"leiomyomatous tumor" EXACT [NCI2004_11_17:C3157] | ||
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|located_in= | |located_in= | ||
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|property_value=IAO:0000412 file:/Users/cjm/Dropbox/fantom5/HumanDO.obo | |||
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}} | }} | ||
Revision as of 13:59, 11 June 2012
| Name: | leiomyoma | ||
|---|---|---|---|
| Namespace: | disease_ontology | ||
| Definition: | "A cell type benign neoplasm that is a benign tumor of smooth muscle cells." [url:http\://en.wikipedia.org/wiki/Cancer, url:http\://en.wikipedia.org/wiki/Leiomyoma] | ||
| Xrefs: |
| ||
| Synonyms: |
"leiomyoma" EXACT [CSP2005:2011-3663] "leiomyoma NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189788005] "leiomyomatous neoplasm (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189787000] "leiomyomatous neoplasm NOS (morphologic abnormality)" EXACT [SNOMEDCT_2005_07_31:189793008] "leiomyomatous tumor" EXACT [NCI2004_11_17:C3157] |
Ontology association<br>Each term has an is_a parent in the Disease Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to DISEASE ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | DOID:0060084(cell type benign neoplasm) |
|---|
Children
NA
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples
Human (Homo sapiens)
- 10569-108B2 (leiomyoma cell line:10964C)
- 10570-108B3 (leiomyoma cell line:15242A)
- 10571-108B4 (leiomyoma cell line:15425)
- 10572-108B5
Mouse (Mus musculus)
- 10569-108B2 (leiomyoma cell line:10964C)
- 10570-108B3 (leiomyoma cell line:15242A)
- 10571-108B4 (leiomyoma cell line:15425)
- 10572-108B5
Enrichment analysis: top 100 FFCP enriched with this ontology termTOP 100 FANTOM5 Cage Peaks enriched with DOID:127 (leiomyoma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 5.41e-147 | FFCP PHASE2:Hg19::chr3:132975986..132975997,-#_d00878cb70a4a23c5131b6943b0765cf | p1@uc003epl.2 |
| 5.41e-147 | FFCP PHASE1:Hg19::chr3:132975986..132975997,-#_d00878cb70a4a23c5131b6943b0765cf | p1@uc003epl.2 |
| 8.98e-131 | FFCP PHASE2:Hg19::chr1:152842532..152842539,+#_d5f96552b89497180c25b346ebe93d92 | p@chr1:152842532..152842539, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr1:152842532..152842539,+#_d5f96552b89497180c25b346ebe93d92 | p@chr1:152842532..152842539, + |
| 8.98e-131 | FFCP PHASE2:Hg19::chr1:152842546..152842554,+#_d5f96552b89497180c25b346ebe93d92 | p@chr1:152842546..152842554, + |
| 8.98e-131 | FFCP PHASE1:Hg19::chr1:152842546..152842554,+#_d5f96552b89497180c25b346ebe93d92 | p@chr1:152842546..152842554, + |
| 2.33e-118 | FFCP PHASE1:Hg19::chr3:132976005..132976010,-#_9bf40fa349115f656b4bdc9ccc25d30e | p2@ENST00000505721 |
| 2.33e-118 | FFCP PHASE2:Hg19::chr3:132976005..132976010,-#_9bf40fa349115f656b4bdc9ccc25d30e | p2@ENST00000505721 |
| 3.48e-118 | FFCP PHASE2:Hg19::chr2:218192886..218192899,-#_ff735fb53a1d19feda3fd22181f355f4 | p@chr2:218192886..218192899, - |
| 3.48e-118 | FFCP PHASE1:Hg19::chr2:218192886..218192899,-#_ff735fb53a1d19feda3fd22181f355f4 | p@chr2:218192886..218192899, - |
| 5.41e-85 | FFCP PHASE1:Hg19::chr8:42037558..42037573,-#_7ecf57fa3698bf45966474d02c9482c9 | p@chr8:42037558..42037573, - |
| 5.41e-85 | FFCP PHASE2:Hg19::chr8:42037558..42037573,-#_7ecf57fa3698bf45966474d02c9482c9 | p@chr8:42037558..42037573, - |
| 1.28e-84 | FFCP PHASE2:Hg19::chr3:141150971..141150978,+#_487f031c75e9a7a312f7aeb33567e9cb | p60@ZBTB38 |
| 1.28e-84 | FFCP PHASE1:Hg19::chr3:141150971..141150978,+#_487f031c75e9a7a312f7aeb33567e9cb | p60@ZBTB38 |
| 2.39e-66 | FFCP PHASE2:Hg19::chr2:218192853..218192858,-#_ff3c2beaf55be562cd3e69b4377237b8 | p@chr2:218192853..218192858, - |
| 2.39e-66 | FFCP PHASE1:Hg19::chr2:218192853..218192858,-#_ff3c2beaf55be562cd3e69b4377237b8 | p@chr2:218192853..218192858, - |
| 4.68e-66 | FFCP PHASE1:Hg19::chr1:163045452..163045464,+#_1c13ad77663790a3a38253e55ad2be97 | p@chr1:163045452..163045464, + |
| 4.68e-66 | FFCP PHASE2:Hg19::chr1:163045452..163045464,+#_1c13ad77663790a3a38253e55ad2be97 | p@chr1:163045452..163045464, + |
| 2.43e-60 | FFCP PHASE2:Hg19::chr22:44708774..44708788,-#_295250bf53da3c337d817eb4c64b03aa | p3@KIAA1644 |
| 2.43e-60 | FFCP PHASE1:Hg19::chr22:44708774..44708788,-#_295250bf53da3c337d817eb4c64b03aa | p3@KIAA1644 |
| 4.17e-55 | FFCP PHASE2:Hg19::chr2:207406777..207406786,+#_d94b1a7d87d91e712323cd3c5f525124 | p9@ADAM23 |
| 4.17e-55 | FFCP PHASE1:Hg19::chr2:207406777..207406786,+#_d94b1a7d87d91e712323cd3c5f525124 | p9@ADAM23 |
| 1.41e-46 | FFCP PHASE2:Hg19::chr8:42040287..42040298,-#_b29eebabd6265515ddbaaea13ffbe358 | p10@PLAT |
| 1.41e-46 | FFCP PHASE1:Hg19::chr8:42040287..42040298,-#_b29eebabd6265515ddbaaea13ffbe358 | p10@PLAT |
| 9.77e-45 | FFCP PHASE2:Hg19::chr7:12134329..12134354,-#_58dc3c67aa521508cb1dff4c402b1893 | p@chr7:12134329..12134354, - |
| 9.77e-45 | FFCP PHASE1:Hg19::chr7:12134329..12134354,-#_58dc3c67aa521508cb1dff4c402b1893 | p@chr7:12134329..12134354, - |
| 9.77e-45 | FFCP PHASE2:Hg19::chr2:218193183..218193196,-#_58dc3c67aa521508cb1dff4c402b1893 | p@chr2:218193183..218193196, - |
| 9.77e-45 | FFCP PHASE1:Hg19::chr2:218193183..218193196,-#_58dc3c67aa521508cb1dff4c402b1893 | p@chr2:218193183..218193196, - |
| 6.94e-44 | FFCP PHASE1:Hg19::chr6:86200265..86200276,+#_bb26a66b8ecc3d78bd3c2741d64ea1ae | p@chr6:86200265..86200276, + |
| 6.94e-44 | FFCP PHASE2:Hg19::chr6:86200265..86200276,+#_bb26a66b8ecc3d78bd3c2741d64ea1ae | p@chr6:86200265..86200276, + |
| 1.23e-38 | FFCP PHASE2:Hg19::chrX:7077952..7077959,+#_de6772f1b9d061dba0d0c7245fa3a42c | p18@STS |
| 1.23e-38 | FFCP PHASE1:Hg19::chrX:7077952..7077959,+#_de6772f1b9d061dba0d0c7245fa3a42c | p18@STS |
| 1.85e-36 | FFCP PHASE2:Hg19::chr6:86204236..86204247,+#_0180ed1196b8db329fe57bea66c6751b | p@chr6:86204236..86204247, + |
| 1.85e-36 | FFCP PHASE1:Hg19::chr6:86204236..86204247,+#_0180ed1196b8db329fe57bea66c6751b | p@chr6:86204236..86204247, + |
| 2.98e-36 | FFCP PHASE2:Hg19::chr1:198203826..198203841,+#_72c8e672946ac84378062c62fe9c5680 | p@chr1:198203826..198203841, + |
| 2.98e-36 | FFCP PHASE1:Hg19::chr1:198203826..198203841,+#_72c8e672946ac84378062c62fe9c5680 | p@chr1:198203826..198203841, + |
| 4.66e-34 | FFCP PHASE2:Hg19::chr13:32313685..32313699,+#_5e55b149897cea224b09ae42961de925 | p2@RXFP2 |
| 4.66e-34 | FFCP PHASE1:Hg19::chr13:32313685..32313699,+#_5e55b149897cea224b09ae42961de925 | p2@RXFP2 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr1:46379338..46379343,+#_e8387d86bceb276d6eca9b9e93b9f7f4 | p13@MAST2 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr4:187518318..187518321,-#_e8387d86bceb276d6eca9b9e93b9f7f4 | p53@FAT1 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr11:102712977..102712984,-#_e8387d86bceb276d6eca9b9e93b9f7f4 | p@chr11:102712977..102712984, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr3:132975822..132975848,-#_e8387d86bceb276d6eca9b9e93b9f7f4 | p@chr3:132975822..132975848, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr7:12134356..12134370,-#_e8387d86bceb276d6eca9b9e93b9f7f4 | p@chr7:12134356..12134370, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr11:102712977..102712984,-#_e8387d86bceb276d6eca9b9e93b9f7f4 | p@chr11:102712977..102712984, - |
| 5.96e-34 | FFCP PHASE1:Hg19::chr3:132975822..132975848,-#_e8387d86bceb276d6eca9b9e93b9f7f4 | p@chr3:132975822..132975848, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr3:132975886..132975894,-#_e8387d86bceb276d6eca9b9e93b9f7f4 | p1@ENST00000504993 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr7:12134356..12134370,-#_e8387d86bceb276d6eca9b9e93b9f7f4 | p@chr7:12134356..12134370, - |
| 5.96e-34 | FFCP PHASE2:Hg19::chr6:130763941..130763951,+#_e8387d86bceb276d6eca9b9e93b9f7f4 | p@chr6:130763941..130763951, + |
| 5.96e-34 | FFCP PHASE1:Hg19::chr3:132975886..132975894,-#_e8387d86bceb276d6eca9b9e93b9f7f4 | p1@ENST00000504993 |
| 5.96e-34 | FFCP PHASE1:Hg19::chr6:130763941..130763951,+#_e8387d86bceb276d6eca9b9e93b9f7f4 | p@chr6:130763941..130763951, + |
| 5.96e-34 | FFCP PHASE2:Hg19::chr1:46379338..46379343,+#_e8387d86bceb276d6eca9b9e93b9f7f4 | p13@MAST2 |
| 5.96e-34 | FFCP PHASE2:Hg19::chr4:187518318..187518321,-#_e8387d86bceb276d6eca9b9e93b9f7f4 | p53@FAT1 |
| 9.1e-34 | FFCP PHASE2:Hg19::chr13:32313658..32313668,+#_8f487ae0828d2248f4966c3b68e5147c | p3@RXFP2 |
| 9.1e-34 | FFCP PHASE1:Hg19::chr13:32313658..32313668,+#_8f487ae0828d2248f4966c3b68e5147c | p3@RXFP2 |
| 8.26e-33 | FFCP PHASE2:Hg19::chr21:30000326..30000330,+#_9d7b7c6454c09eb44c747bbfbb3ede6f | p@chr21:30000326..30000330, + |
| 8.26e-33 | FFCP PHASE1:Hg19::chr21:30000326..30000330,+#_9d7b7c6454c09eb44c747bbfbb3ede6f | p@chr21:30000326..30000330, + |
| 2.41e-32 | FFCP PHASE2:Hg19::chr6:130761678..130761702,+#_0f8a8b9f093a7f57ad964df0cef34d47 | p1@AB385516 |
| 2.41e-32 | FFCP PHASE1:Hg19::chr6:130761678..130761702,+#_0f8a8b9f093a7f57ad964df0cef34d47 | p1@AB385516 |
| 1.3e-31 | FFCP PHASE2:Hg19::chr8:42042654..42042665,-#_0d84b6cb6d4274cec3599224c863d90f | p9@PLAT |
| 1.3e-31 | FFCP PHASE1:Hg19::chr8:42042654..42042665,-#_0d84b6cb6d4274cec3599224c863d90f | p9@PLAT |
| 7.37e-31 | FFCP PHASE2:Hg19::chr2:220326139..220326158,+#_2b7426639d9e6fd5a7d4011f399ec981 | p10@SPEG |
| 7.37e-31 | FFCP PHASE1:Hg19::chr2:220326139..220326158,+#_2b7426639d9e6fd5a7d4011f399ec981 | p10@SPEG |
| 1.0e-30 | FFCP PHASE1:Hg19::chr7:27219651..27219660,-#_1a1a919887906d488d0224ad569c528c | p4@ENST00000470747 |
| 1.0e-30 | FFCP PHASE2:Hg19::chr7:27219651..27219660,-#_1a1a919887906d488d0224ad569c528c | p4@ENST00000470747 |
| 1.71e-30 | FFCP PHASE2:Hg19::chr8:42033253..42033264,-#_a1b176c2183f5eec272f4e88a822885e | p@chr8:42033253..42033264, - |
| 1.71e-30 | FFCP PHASE1:Hg19::chr8:42033253..42033264,-#_a1b176c2183f5eec272f4e88a822885e | p@chr8:42033253..42033264, - |
| 1.98e-30 | FFCP PHASE2:Hg19::chr3:141151044..141151053,+#_13e146b5e23075dc2706f908b50c64b7 | p51@ZBTB38 |
| 1.98e-30 | FFCP PHASE1:Hg19::chr3:141151044..141151053,+#_13e146b5e23075dc2706f908b50c64b7 | p51@ZBTB38 |
| 3.59e-30 | FFCP PHASE1:Hg19::chr10:90974443..90974454,-#_158552840c619129259e1517cb118a1f | p@chr10:90974443..90974454, - |
| 3.59e-30 | FFCP PHASE2:Hg19::chr10:90974443..90974454,-#_158552840c619129259e1517cb118a1f | p@chr10:90974443..90974454, - |
| 8.26e-30 | FFCP PHASE2:Hg19::chr7:84349931..84349955,-#_84f1f98ac5843e6287279d3f616ef071 | p@chr7:84349931..84349955, - |
| 8.26e-30 | FFCP PHASE1:Hg19::chr7:84349931..84349955,-#_84f1f98ac5843e6287279d3f616ef071 | p@chr7:84349931..84349955, - |
| 1.8e-29 | FFCP PHASE2:Hg19::chr9:106854088..106854104,-#_b965d825d6ebc60744fe4cdcfd654589 | p@chr9:106854088..106854104, - |
| 1.8e-29 | FFCP PHASE1:Hg19::chr9:106854088..106854104,-#_b965d825d6ebc60744fe4cdcfd654589 | p@chr9:106854088..106854104, - |
| 6.14e-29 | FFCP PHASE1:Hg19::chr3:98518094..98518105,-#_c265bef2adda44f001946aa79832a573 | p39@DCBLD2 |
| 6.14e-29 | FFCP PHASE2:Hg19::chr3:98518094..98518105,-#_c265bef2adda44f001946aa79832a573 | p39@DCBLD2 |
| 6.28e-29 | FFCP PHASE1:Hg19::chr10:90988088..90988122,-#_b67e4e39a465c1282d8a2a78e200f8a8 | p@chr10:90988088..90988122, - |
| 6.28e-29 | FFCP PHASE2:Hg19::chr10:90988088..90988122,-#_b67e4e39a465c1282d8a2a78e200f8a8 | p@chr10:90988088..90988122, - |
| 6.84e-28 | FFCP PHASE2:Hg19::chr1:219615990..219616001,-#_a494aeff54e576f17ef0f977c280888b | p1@ENST00000420762 |
| 6.84e-28 | FFCP PHASE1:Hg19::chr1:219615990..219616001,-#_a494aeff54e576f17ef0f977c280888b | p1@ENST00000420762 |
| 8.12e-28 | FFCP PHASE1:Hg19::chr4:6279204..6279216,+#_a8bcc4843b3b6b3588be4dc750ce8a94 | p6@WFS1 |
| 8.12e-28 | FFCP PHASE2:Hg19::chr4:6279204..6279216,+#_a8bcc4843b3b6b3588be4dc750ce8a94 | p6@WFS1 |
| 9.35e-28 | FFCP PHASE2:Hg19::chr8:42045498..42045512,-#_f8b8e07cdc4a098de0db0e7596a58cfd | p6@PLAT |
| 9.35e-28 | FFCP PHASE1:Hg19::chr8:42045498..42045512,-#_f8b8e07cdc4a098de0db0e7596a58cfd | p6@PLAT |
| 1.06e-27 | FFCP PHASE1:Hg19::chr3:151871166..151871172,+#_8a70f18409f0a69a8e4de4efcab7d12c | p@chr3:151871166..151871172, + |
| 1.06e-27 | FFCP PHASE2:Hg19::chr6:17281802..17281817,+#_8a70f18409f0a69a8e4de4efcab7d12c | p13@RBM24 |
| 1.06e-27 | FFCP PHASE1:Hg19::chr6:17281802..17281817,+#_8a70f18409f0a69a8e4de4efcab7d12c | p13@RBM24 |
| 1.06e-27 | FFCP PHASE2:Hg19::chr3:151871166..151871172,+#_8a70f18409f0a69a8e4de4efcab7d12c | p@chr3:151871166..151871172, + |
| 1.82e-27 | FFCP PHASE2:Hg19::chr3:69811826..69811835,+#_d794d01d55ae88b6194aadc7e7056324 | p16@MITF |
| 1.82e-27 | FFCP PHASE1:Hg19::chr3:69811826..69811835,+#_d794d01d55ae88b6194aadc7e7056324 | p16@MITF |
| 2.72e-27 | FFCP PHASE2:Hg19::chr7:129962463..129962477,+#_b55a8e1aadd03cd1efe67312237d044b | p@chr7:129962463..129962477, + |
| 2.72e-27 | FFCP PHASE1:Hg19::chr7:129962463..129962477,+#_b55a8e1aadd03cd1efe67312237d044b | p@chr7:129962463..129962477, + |
| 2.98e-27 | FFCP PHASE2:Hg19::chr1:163042618..163042628,+#_452ee6838b990b7c594b832e489a9c59 | p@chr1:163042618..163042628, + |
| 2.98e-27 | FFCP PHASE1:Hg19::chr1:163042618..163042628,+#_452ee6838b990b7c594b832e489a9c59 | p@chr1:163042618..163042628, + |
| 3.26e-27 | FFCP PHASE2:Hg19::chr12:75875762..75875778,+#_8a8932fb87db48ce32aefda63bf48efd | p@chr12:75875762..75875778, + |
| 3.26e-27 | FFCP PHASE1:Hg19::chr12:75875762..75875778,+#_8a8932fb87db48ce32aefda63bf48efd | p@chr12:75875762..75875778, + |
| 4.65e-27 | FFCP PHASE2:Hg19::chr14:76447469..76447487,-#_37c48be25c82c030c87cc9417bbe555f | p12@TGFB3 |
| 4.65e-27 | FFCP PHASE1:Hg19::chr14:76447469..76447487,-#_37c48be25c82c030c87cc9417bbe555f | p12@TGFB3 |
| 5.31e-27 | FFCP PHASE1:Hg19::chr10:90975757..90975768,-#_b74356c295ce6d6cf5acb1e78b34e80e | p@chr10:90975757..90975768, - |
| 5.31e-27 | FFCP PHASE2:Hg19::chr10:90975757..90975768,-#_b74356c295ce6d6cf5acb1e78b34e80e | p@chr10:90975757..90975768, - |
