UBERON:0000964: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0000964
|name=cornea
|namespace=
|def="transparent front part of the eye that covers the iris, pupil, and anterior chamber. Together with the lens, the...") |
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|part_of=UBERON:0000019;;UBERON:0001801 | |part_of=UBERON:0000019;;UBERON:0001801 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
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Revision as of 17:10, 15 June 2012
| Name: | cornea | ||
|---|---|---|---|
| Definition: | "transparent front part of the eye that covers the iris, pupil, and anterior chamber. Together with the lens, the cornea refracts light, accounting for approximately two-thirds of the eye's total optical power." [Wikipedia:Cornea] | ||
| Xrefs: |
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| Synonyms: | "tunica cornea" RELATED [] | ||
| Comments: | This class was created automatically from a combination of ontologies | ||
| Alt_id: | UBERON:FBbt_00004191-FMA_58238-MA_0000266-XAO_0000180-ZFA_0000640 | ||
| Subset: |
uberon_slim vertebrate_core |
200px-Schematic_diagram_of_the_human_eye_en.svg.png]
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003102(surface structure),UBERON:0004121(ectoderm-derived structure) |
|---|---|
| develops_from: | UBERON:0004348(optic eminence),UBERON:0005427(corneal primordium) |
| part_of: | UBERON:0000019(camera-type eye),UBERON:0001801(anterior segment of eyeball) |
Children
| part of: | CL:0000575 (corneal epithelial cell),UBERON:0001777 (substantia propria of cornea) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11526-119I5 (Corneal Epithelial Cells, donor1)
- 11527-119I6 (Keratocytes, donor1)
- 11606-120I4 (Corneal Epithelial Cells, donor2)
- 11607-120I5 (Keratocytes, donor2)
- 11687-122I4 (Corneal Epithelial Cells, donor3)
- 11688-122I5 (Keratocytes, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0000964 (cornea), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.67e-66 | FFCP PHASE1:Hg19::chr17:39023189..39023197,-#_2ff9d1d71947082ce8fe1888ca5fafe8 | p2@KRT12 |
| 4.67e-66 | FFCP PHASE2:Hg19::chr17:39023189..39023197,-#_2ff9d1d71947082ce8fe1888ca5fafe8 | p2@KRT12 |
| 3.1e-50 | FFCP PHASE1:Hg19::chr3:52362029..52362031,+#_77abf304917189d16d6d64d5687dd983 | p@chr3:52362029..52362031, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr7:150910973..150910976,-#_77abf304917189d16d6d64d5687dd983 | p@chr7:150910973..150910976, - |
| 3.1e-50 | FFCP PHASE2:Hg19::chr3:52362029..52362031,+#_77abf304917189d16d6d64d5687dd983 | p@chr3:52362029..52362031, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr7:150910973..150910976,-#_77abf304917189d16d6d64d5687dd983 | p@chr7:150910973..150910976, - |
| 3.31e-40 | FFCP PHASE2:Hg19::chr12:53189894..53189905,-#_90f2e9066280b50b926dc8cdec7f33ea | p1@KRT3 |
| 3.31e-40 | FFCP PHASE1:Hg19::chr12:53189894..53189905,-#_90f2e9066280b50b926dc8cdec7f33ea | p1@KRT3 |
| 5.98e-34 | FFCP PHASE1:Hg19::chr22:30144620..30144638,-#_44432c199e26cf85044c5f0732ead873 | p7@ZMAT5 |
| 5.98e-34 | FFCP PHASE2:Hg19::chr22:30144620..30144638,-#_44432c199e26cf85044c5f0732ead873 | p7@ZMAT5 |
| 1.17e-33 | FFCP PHASE1:Hg19::chr8:124206334..124206344,+#_454aec2fb3796f540b7085aa35773a06 | p@chr8:124206334..124206344, + |
| 1.17e-33 | FFCP PHASE2:Hg19::chr8:124206334..124206344,+#_454aec2fb3796f540b7085aa35773a06 | p@chr8:124206334..124206344, + |
| 3.16e-29 | FFCP PHASE2:Hg19::chr1:19403546..19403571,-#_7c2f21565d38af5774fe6d82719c956d | p@chr1:19403546..19403571, - |
| 3.16e-29 | FFCP PHASE1:Hg19::chr7:1600419..1600429,-#_7c2f21565d38af5774fe6d82719c956d | p11@TMEM184A |
| 3.16e-29 | FFCP PHASE2:Hg19::chr7:1600419..1600429,-#_7c2f21565d38af5774fe6d82719c956d | p11@TMEM184A |
| 3.16e-29 | FFCP PHASE1:Hg19::chr1:19403546..19403571,-#_7c2f21565d38af5774fe6d82719c956d | p@chr1:19403546..19403571, - |
| 5.61e-29 | FFCP PHASE2:Hg19::chr12:48164790..48164808,-#_aa717f83d141a7a36f50414d77bc8be5 | p16@RAPGEF3 |
| 5.61e-29 | FFCP PHASE1:Hg19::chr12:48164790..48164808,-#_aa717f83d141a7a36f50414d77bc8be5 | p16@RAPGEF3 |
| 5.61e-29 | FFCP PHASE1:Hg19::chr20:43743762..43743770,-#_aa717f83d141a7a36f50414d77bc8be5 | p3@WFDC5 |
| 5.61e-29 | FFCP PHASE2:Hg19::chr20:43743762..43743770,-#_aa717f83d141a7a36f50414d77bc8be5 | p3@WFDC5 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr16:3014251..3014254,+#_3a2be84488e7359e2a978f2dfc284e8d | p3@KREMEN2 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr16:3014251..3014254,+#_3a2be84488e7359e2a978f2dfc284e8d | p3@KREMEN2 |
| 6.73e-26 | FFCP PHASE1:Hg19::chr6:35048829..35048844,+#_c7c1c1821dba5de92fd694c6c4a2489a | p@chr6:35048829..35048844, + |
| 6.73e-26 | FFCP PHASE2:Hg19::chr6:35048829..35048844,+#_c7c1c1821dba5de92fd694c6c4a2489a | p@chr6:35048829..35048844, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:22932230..22932233,-#_cf028f33186ae6d9b8db5c57f6e98c0e | p5@ENST00000520840, p5@ENST00000523806 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr15:49255230..49255248,-#_cf028f33186ae6d9b8db5c57f6e98c0e | p16@SHC4 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr10:92617531..92617541,-#_cf028f33186ae6d9b8db5c57f6e98c0e | p8@HTR7 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:22932230..22932233,-#_cf028f33186ae6d9b8db5c57f6e98c0e | p5@ENST00000520840, p5@ENST00000523806 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr16:56368957..56368963,+#_cf028f33186ae6d9b8db5c57f6e98c0e | p@chr16:56368957..56368963, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr10:92617531..92617541,-#_cf028f33186ae6d9b8db5c57f6e98c0e | p8@HTR7 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr15:49255230..49255248,-#_cf028f33186ae6d9b8db5c57f6e98c0e | p16@SHC4 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr6:113369869..113369877,+#_cf028f33186ae6d9b8db5c57f6e98c0e | p@chr6:113369869..113369877, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr16:56368957..56368963,+#_cf028f33186ae6d9b8db5c57f6e98c0e | p@chr16:56368957..56368963, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr6:113369869..113369877,+#_cf028f33186ae6d9b8db5c57f6e98c0e | p@chr6:113369869..113369877, + |
| 8.66e-26 | FFCP PHASE1:Hg19::chr11:67463189..67463193,-#_23e0095269c37215df40651091552277 | p@chr11:67463189..67463193, - |
| 8.66e-26 | FFCP PHASE2:Hg19::chr11:67463189..67463193,-#_23e0095269c37215df40651091552277 | p@chr11:67463189..67463193, - |
| 1.0e-22 | FFCP PHASE2:Hg19::chr12:46897588..46897603,+#_9b81283dcf9e5cad4b012a567762323a | p@chr12:46897588..46897603, + |
| 1.0e-22 | FFCP PHASE1:Hg19::chr12:46897588..46897603,+#_9b81283dcf9e5cad4b012a567762323a | p@chr12:46897588..46897603, + |
| 1.12e-22 | FFCP PHASE2:Hg19::chr13:20934450..20934456,+#_582f88348edc7fa2eb05e2a0f981118d | p@chr13:20934450..20934456, + |
| 1.12e-22 | FFCP PHASE1:Hg19::chr13:20934450..20934456,+#_582f88348edc7fa2eb05e2a0f981118d | p@chr13:20934450..20934456, + |
| 1.25e-22 | FFCP PHASE1:Hg19::chr19:51538096..51538109,-#_187bf8317fc6de318046bfc96da90f02 | p5@KLK12 |
| 1.25e-22 | FFCP PHASE2:Hg19::chr19:51538096..51538109,-#_187bf8317fc6de318046bfc96da90f02 | p5@KLK12 |
| 5.17e-21 | FFCP PHASE1:Hg19::chr10:5529595..5529606,-#_8143d1daf838796b708f9f02e9ba770c | p@chr10:5529595..5529606, - |
| 5.17e-21 | FFCP PHASE2:Hg19::chr10:5529595..5529606,-#_8143d1daf838796b708f9f02e9ba770c | p@chr10:5529595..5529606, - |
| 7.74e-21 | FFCP PHASE1:Hg19::chr19:1249729..1249741,+#_5a005a1696a04d0374cbe1a399944a6e | p19@MIDN |
| 7.74e-21 | FFCP PHASE2:Hg19::chr19:1249729..1249741,+#_5a005a1696a04d0374cbe1a399944a6e | p19@MIDN |
| 1.15e-20 | FFCP PHASE1:Hg19::chr2:131669803..131669810,+#_43dd40ee521bc08db10ea8b2242090cc | p@chr2:131669803..131669810, + |
| 1.15e-20 | FFCP PHASE2:Hg19::chr2:131669803..131669810,+#_43dd40ee521bc08db10ea8b2242090cc | p@chr2:131669803..131669810, + |
| 1.28e-20 | FFCP PHASE1:Hg19::chr9:127212697..127212708,+#_d1ec072a97d7cf595d3a37dd7575d3c5 | p@chr9:127212697..127212708, + |
| 1.28e-20 | FFCP PHASE2:Hg19::chr9:127212697..127212708,+#_d1ec072a97d7cf595d3a37dd7575d3c5 | p@chr9:127212697..127212708, + |
| 1.56e-20 | FFCP PHASE1:Hg19::chr19:1905001..1905006,+#_43567b9bdefd8bbad845ada59bc40f32 | p11@SCAMP4 |
| 1.56e-20 | FFCP PHASE2:Hg19::chr19:1905001..1905006,+#_43567b9bdefd8bbad845ada59bc40f32 | p11@SCAMP4 |
| 1.9e-20 | FFCP PHASE2:Hg19::chr19:50709335..50709346,+#_e3f35f2630b59db25515a127f7617c6c | p@chr19:50709335..50709346, + |
| 1.9e-20 | FFCP PHASE2:Hg19::chr15:72490099..72490109,-#_e3f35f2630b59db25515a127f7617c6c | p3@GRAMD2 |
| 1.9e-20 | FFCP PHASE1:Hg19::chr15:72490099..72490109,-#_e3f35f2630b59db25515a127f7617c6c | p3@GRAMD2 |
| 1.9e-20 | FFCP PHASE1:Hg19::chr19:50709335..50709346,+#_e3f35f2630b59db25515a127f7617c6c | p@chr19:50709335..50709346, + |
| 2.76e-19 | FFCP PHASE1:Hg19::chr20:25176603..25176614,+#_785092416293ee0de4acf6a3e5ec9e85 | p@chr20:25176603..25176614, + |
| 2.76e-19 | FFCP PHASE2:Hg19::chr20:25176603..25176614,+#_785092416293ee0de4acf6a3e5ec9e85 | p@chr20:25176603..25176614, + |
| 6.77e-19 | FFCP PHASE1:Hg19::chr19:44306567..44306574,-#_f92c0443675481ca40d04d3c56a32e65 | p7@LYPD5 |
| 6.77e-19 | FFCP PHASE2:Hg19::chr19:44306567..44306574,-#_f92c0443675481ca40d04d3c56a32e65 | p7@LYPD5 |
| 8.88e-19 | FFCP PHASE2:Hg19::chr2:28853455..28853476,+#_8b5058e032517c667938c909de34d205 | p@chr2:28853455..28853476, + |
| 8.88e-19 | FFCP PHASE1:Hg19::chr2:28853455..28853476,+#_8b5058e032517c667938c909de34d205 | p@chr2:28853455..28853476, + |
| 9.72e-19 | FFCP PHASE1:Hg19::chr20:42816206..42816211,-#_74814023178a882a480104b00ddc842c | p8@JPH2 |
| 9.72e-19 | FFCP PHASE1:Hg19::chr19:51538121..51538134,-#_74814023178a882a480104b00ddc842c | p4@KLK12 |
| 9.72e-19 | FFCP PHASE2:Hg19::chr20:42816206..42816211,-#_74814023178a882a480104b00ddc842c | p8@JPH2 |
| 9.72e-19 | FFCP PHASE2:Hg19::chr19:51538121..51538134,-#_74814023178a882a480104b00ddc842c | p4@KLK12 |
| 8.69e-18 | FFCP PHASE1:Hg19::chr3:124535316..124535340,+#_c2238a2135fd215c2ed4656e3c2cda1b | p@chr3:124535316..124535340, + |
| 8.69e-18 | FFCP PHASE2:Hg19::chr6:151770193..151770196,-#_c2238a2135fd215c2ed4656e3c2cda1b | p@chr6:151770193..151770196, - |
| 8.69e-18 | FFCP PHASE2:Hg19::chr3:124535316..124535340,+#_c2238a2135fd215c2ed4656e3c2cda1b | p@chr3:124535316..124535340, + |
| 8.69e-18 | FFCP PHASE1:Hg19::chr5:59064162..59064173,-#_c2238a2135fd215c2ed4656e3c2cda1b | p72@PDE4D |
| 8.69e-18 | FFCP PHASE1:Hg19::chr1:44820685..44820695,-#_c2238a2135fd215c2ed4656e3c2cda1b | p10@ERI3 |
| 8.69e-18 | FFCP PHASE2:Hg19::chr5:59064162..59064173,-#_c2238a2135fd215c2ed4656e3c2cda1b | p72@PDE4D |
| 8.69e-18 | FFCP PHASE1:Hg19::chr21:47410794..47410799,+#_c2238a2135fd215c2ed4656e3c2cda1b | p@chr21:47410794..47410799, + |
| 8.69e-18 | FFCP PHASE2:Hg19::chr1:44820685..44820695,-#_c2238a2135fd215c2ed4656e3c2cda1b | p10@ERI3 |
| 8.69e-18 | FFCP PHASE1:Hg19::chr6:151770193..151770196,-#_c2238a2135fd215c2ed4656e3c2cda1b | p@chr6:151770193..151770196, - |
| 8.69e-18 | FFCP PHASE2:Hg19::chr21:47410794..47410799,+#_c2238a2135fd215c2ed4656e3c2cda1b | p@chr21:47410794..47410799, + |
| 1.03e-17 | FFCP PHASE2:Hg19::chr15:101459410..101459421,-#_9a2dec9f3250d4e9ffb8b5f4a4df71af | p2@ENST00000560068 |
| 1.03e-17 | FFCP PHASE2:Hg19::chr1:9970194..9970195,-#_9a2dec9f3250d4e9ffb8b5f4a4df71af | p14@CTNNBIP1 |
| 1.03e-17 | FFCP PHASE1:Hg19::chr5:79375654..79375674,+#_9a2dec9f3250d4e9ffb8b5f4a4df71af | p@chr5:79375654..79375674, + |
| 1.03e-17 | FFCP PHASE1:Hg19::chr15:101459410..101459421,-#_9a2dec9f3250d4e9ffb8b5f4a4df71af | p2@ENST00000560068 |
| 1.03e-17 | FFCP PHASE1:Hg19::chr2:25383828..25383855,-#_9a2dec9f3250d4e9ffb8b5f4a4df71af | p4@POMC |
| 1.03e-17 | FFCP PHASE2:Hg19::chr5:79375654..79375674,+#_9a2dec9f3250d4e9ffb8b5f4a4df71af | p@chr5:79375654..79375674, + |
| 1.03e-17 | FFCP PHASE1:Hg19::chr10:74020629..74020634,-#_9a2dec9f3250d4e9ffb8b5f4a4df71af | p@chr10:74020629..74020634, - |
| 1.03e-17 | FFCP PHASE1:Hg19::chr10:43133595..43133606,-#_9a2dec9f3250d4e9ffb8b5f4a4df71af | p@chr10:43133595..43133606, - |
| 1.03e-17 | FFCP PHASE2:Hg19::chr2:25383828..25383855,-#_9a2dec9f3250d4e9ffb8b5f4a4df71af | p4@POMC |
| 1.03e-17 | FFCP PHASE1:Hg19::chr11:65265332..65265342,+#_9a2dec9f3250d4e9ffb8b5f4a4df71af | p19@MALAT1 |
| 1.03e-17 | FFCP PHASE2:Hg19::chr10:74020629..74020634,-#_9a2dec9f3250d4e9ffb8b5f4a4df71af | p@chr10:74020629..74020634, - |
| 1.03e-17 | FFCP PHASE2:Hg19::chr10:43133595..43133606,-#_9a2dec9f3250d4e9ffb8b5f4a4df71af | p@chr10:43133595..43133606, - |
| 1.03e-17 | FFCP PHASE2:Hg19::chr11:65265332..65265342,+#_9a2dec9f3250d4e9ffb8b5f4a4df71af | p19@MALAT1 |
| 1.03e-17 | FFCP PHASE1:Hg19::chr1:9970194..9970195,-#_9a2dec9f3250d4e9ffb8b5f4a4df71af | p14@CTNNBIP1 |
| 2.59e-17 | FFCP PHASE2:Hg19::chr11:119039069..119039081,+#_2b76838760449956aa988ca81ac472dc | p9@NLRX1 |
| 2.59e-17 | FFCP PHASE1:Hg19::chr11:119039069..119039081,+#_2b76838760449956aa988ca81ac472dc | p9@NLRX1 |
| 2.09e-16 | FFCP PHASE2:Hg19::chr12:48164812..48164829,-#_a550ddda99cacfc54aa3c677c458e366 | p14@RAPGEF3 |
| 2.09e-16 | FFCP PHASE1:Hg19::chr12:48164812..48164829,-#_a550ddda99cacfc54aa3c677c458e366 | p14@RAPGEF3 |
| 2.64e-16 | FFCP PHASE1:Hg19::chr2:131669791..131669801,+#_6d42fb43dd4871154b951938ef7ac4f8 | p@chr2:131669791..131669801, + |
| 2.64e-16 | FFCP PHASE2:Hg19::chr2:131669791..131669801,+#_6d42fb43dd4871154b951938ef7ac4f8 | p@chr2:131669791..131669801, + |
| 3.32e-16 | FFCP PHASE2:Hg19::chr17:39742822..39742850,+#_61101da35bc3b1dfeffbf9f2af0610e9 | p@chr17:39742822..39742850, + |
| 3.32e-16 | FFCP PHASE1:Hg19::chr17:39742822..39742850,+#_61101da35bc3b1dfeffbf9f2af0610e9 | p@chr17:39742822..39742850, + |
| 3.59e-16 | FFCP PHASE1:Hg19::chr1:3591362..3591369,-#_735ed739ce41036349fd4dc68a56000d | p@chr1:3591362..3591369, - |
| 3.59e-16 | FFCP PHASE2:Hg19::chr1:3591362..3591369,-#_735ed739ce41036349fd4dc68a56000d | p@chr1:3591362..3591369, - |
