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Revision as of 17:16, 15 June 2012

Name:cartilage tissue
Definition:"A portion of connective tissue dominated by extracellular matrix containing collagen type II and large amounts of proteoglycan, particularly chondroitin sulfate[GO]. Regular connective tissue, which consists of chondrocytes and related cells, the intercellular matrix of which is chondrified. Examples: hyaline cartilage, fibrocartilage, elastic cartilage[FMA]. an avascular supporting and articular skeletal tissue. It also functions as the primary endoskeletal support in vertebrate embryos. Cartilage is deposited by and is composed of chondroblasts and chondrocytes separated by an extracellular matrix, which may or may not mineralize depending on cartilage type, age, or taxon[Hall and Witten]." [FMA:37377, GO:0051216, http://sourceforge.net/tracker/?func=detail&atid=2257941&aid=3396584&group_id=76834, Wikipedia:Cartilage]
Xrefs:
links:

AAO:0000060
AEO:0000087
BTO:0000206
EFO:0000949
EHDAA2:0003087
EV:0100141
FMA:37377
GAID:99
galen:Cartilage
MA:0000104
MAT:0000189
MESH:A.02.165
MIAA:0000189
ncithesaurus:Cartilage
OpenCyc:Mx4rvVjeOZwpEbGdrcN5Y29ycA
SCTID:309312004
TAO:0001501
VAO:0000040
VHOG:0001207
XAO:0000170

ZFA:0001501
Synonyms: "cartilage tissue" EXACT [FMA:37377]
"cartilaginous tissue" EXACT []
Comments:see also FMA:71500 Set of cartilages, FMA:55107 Cartilage organ, FMA:12264 Articular cartilage. // elements made from cartilage, cartilage-like, or chondroid tissues evolved in invertebrates[H&W]
Alt_id: UBERON:MA_0000104-MIAA_0000189-XAO_0000170
Subset: uberon_slim
vertebrate_core

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002384(connective tissue),UBERON:0004755(skeletal tissue)
part_of:UBERON:0002204(musculoskeletal system)



Children

is a:UBERON:0001995 (fibrocartilage)
derives from:FF:0101574 (chondrosarcoma cell line sample)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002418 (cartilage tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.71e-66FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_dfacfed871cb9c9ae756e3f67d0137aep5@PTGFR
1.71e-66FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_dfacfed871cb9c9ae756e3f67d0137aep5@PTGFR
2.39e-66FFCP PHASE2:Hg19::chr1:154942216..154942223,-#_692c0263db1d68576fc64eaecd1f9d96p@chr1:154942216..154942223, -
2.39e-66FFCP PHASE2:Hg19::chr6:150735340..150735361,+#_692c0263db1d68576fc64eaecd1f9d96p@chr6:150735340..150735361, +
2.39e-66FFCP PHASE2:Hg19::chr12:79920595..79920605,-#_692c0263db1d68576fc64eaecd1f9d96p@chr12:79920595..79920605, -
2.39e-66FFCP PHASE1:Hg19::chr15:95751475..95751482,+#_692c0263db1d68576fc64eaecd1f9d96p@chr15:95751475..95751482, +
2.39e-66FFCP PHASE2:Hg19::chr3:177555440..177555446,-#_692c0263db1d68576fc64eaecd1f9d96p@chr3:177555440..177555446, -
2.39e-66FFCP PHASE2:Hg19::chr15:96181408..96181419,-#_692c0263db1d68576fc64eaecd1f9d96p@chr15:96181408..96181419, -
2.39e-66FFCP PHASE1:Hg19::chr7:80080929..80080934,+#_692c0263db1d68576fc64eaecd1f9d96p@chr7:80080929..80080934, +
2.39e-66FFCP PHASE1:Hg19::chr3:157221979..157222025,-#_692c0263db1d68576fc64eaecd1f9d96p@chr3:157221979..157222025, -
2.39e-66FFCP PHASE1:Hg19::chr1:145471703..145471706,+#_692c0263db1d68576fc64eaecd1f9d96p@chr1:145471703..145471706, +
2.39e-66FFCP PHASE1:Hg19::chr12:46884845..46884851,+#_692c0263db1d68576fc64eaecd1f9d96p@chr12:46884845..46884851, +
2.39e-66FFCP PHASE1:Hg19::chr6:152592460..152592465,-#_692c0263db1d68576fc64eaecd1f9d96p@chr6:152592460..152592465, -
2.39e-66FFCP PHASE1:Hg19::chr12:70351934..70351939,+#_692c0263db1d68576fc64eaecd1f9d96p@chr12:70351934..70351939, +
2.39e-66FFCP PHASE1:Hg19::chr12:95941674..95941679,+#_692c0263db1d68576fc64eaecd1f9d96p@chr12:95941674..95941679, +
2.39e-66FFCP PHASE2:Hg19::chr3:1577586..1577600,-#_692c0263db1d68576fc64eaecd1f9d96p@chr3:1577586..1577600, -
2.39e-66FFCP PHASE2:Hg19::chr18:74961699..74961708,+#_692c0263db1d68576fc64eaecd1f9d96p5@GALR1
2.39e-66FFCP PHASE1:Hg19::chr9:18504821..18504825,+#_692c0263db1d68576fc64eaecd1f9d96p@chr9:18504821..18504825, +
2.39e-66FFCP PHASE1:Hg19::chr6:152589315..152589320,-#_692c0263db1d68576fc64eaecd1f9d96p72@SYNE1
2.39e-66FFCP PHASE1:Hg19::chr4:169935453..169935460,-#_692c0263db1d68576fc64eaecd1f9d96p@chr4:169935453..169935460, -
2.39e-66FFCP PHASE2:Hg19::chr3:2141851..2141858,-#_692c0263db1d68576fc64eaecd1f9d96p@chr3:2141851..2141858, -
2.39e-66FFCP PHASE1:Hg19::chr3:196296715..196296737,-#_692c0263db1d68576fc64eaecd1f9d96p@chr3:196296715..196296737, -
2.39e-66FFCP PHASE1:Hg19::chr2:206927691..206927699,-#_692c0263db1d68576fc64eaecd1f9d96p@chr2:206927691..206927699, -
2.39e-66FFCP PHASE2:Hg19::chr2:53436150..53436154,-#_692c0263db1d68576fc64eaecd1f9d96p@chr2:53436150..53436154, -
2.39e-66FFCP PHASE1:Hg19::chr5:109694595..109694599,+#_692c0263db1d68576fc64eaecd1f9d96p@chr5:109694595..109694599, +
2.39e-66FFCP PHASE2:Hg19::chr4:139817573..139817580,-#_692c0263db1d68576fc64eaecd1f9d96p@chr4:139817573..139817580, -
2.39e-66FFCP PHASE1:Hg19::chr9:13005000..13005036,-#_692c0263db1d68576fc64eaecd1f9d96p@chr9:13005000..13005036, -
2.39e-66FFCP PHASE2:Hg19::chr2:188420455..188420469,+#_692c0263db1d68576fc64eaecd1f9d96p@chr2:188420455..188420469, +
2.39e-66FFCP PHASE1:Hg19::chrX:135338270..135338275,-#_692c0263db1d68576fc64eaecd1f9d96p@chrX:135338270..135338275, -
2.39e-66FFCP PHASE1:Hg19::chr3:170537826..170537835,+#_692c0263db1d68576fc64eaecd1f9d96p@chr3:170537826..170537835, +
2.39e-66FFCP PHASE2:Hg19::chr3:2141982..2141990,+#_692c0263db1d68576fc64eaecd1f9d96p16@CNTN4
2.39e-66FFCP PHASE1:Hg19::chr3:2141785..2141802,-#_692c0263db1d68576fc64eaecd1f9d96p@chr3:2141785..2141802, -
2.39e-66FFCP PHASE1:Hg19::chr12:71031372..71031377,-#_692c0263db1d68576fc64eaecd1f9d96p25@PTPRB
2.39e-66FFCP PHASE1:Hg19::chr7:18439510..18439521,+#_692c0263db1d68576fc64eaecd1f9d96p@chr7:18439510..18439521, +
2.39e-66FFCP PHASE1:Hg19::chr18:74961699..74961708,+#_692c0263db1d68576fc64eaecd1f9d96p5@GALR1
2.39e-66FFCP PHASE1:Hg19::chr11:30105969..30105977,-#_692c0263db1d68576fc64eaecd1f9d96p1@ENST00000527819
2.39e-66FFCP PHASE2:Hg19::chr6:152589291..152589303,-#_692c0263db1d68576fc64eaecd1f9d96p38@SYNE1
2.39e-66FFCP PHASE1:Hg19::chr3:157231406..157231414,-#_692c0263db1d68576fc64eaecd1f9d96p@chr3:157231406..157231414, -
2.39e-66FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_692c0263db1d68576fc64eaecd1f9d96p@chr13:24914614..24914622, -
2.39e-66FFCP PHASE1:Hg19::chr3:2140234..2140235,+#_692c0263db1d68576fc64eaecd1f9d96p36@CNTN4
2.39e-66FFCP PHASE2:Hg19::chr9:12848028..12848033,-#_692c0263db1d68576fc64eaecd1f9d96p@chr9:12848028..12848033, -
2.39e-66FFCP PHASE2:Hg19::chr12:71031310..71031321,-#_692c0263db1d68576fc64eaecd1f9d96p14@PTPRB
2.39e-66FFCP PHASE1:Hg19::chr5:33361438..33361453,-#_692c0263db1d68576fc64eaecd1f9d96p@chr5:33361438..33361453, -
2.39e-66FFCP PHASE1:Hg19::chr3:99508248..99508255,-#_692c0263db1d68576fc64eaecd1f9d96p@chr3:99508248..99508255, -
2.39e-66FFCP PHASE1:Hg19::chr7:79999046..79999051,+#_692c0263db1d68576fc64eaecd1f9d96p41@CD36
2.39e-66FFCP PHASE1:Hg19::chr1:228783266..228783269,-#_692c0263db1d68576fc64eaecd1f9d96p@chr1:228783266..228783269, -
2.39e-66FFCP PHASE2:Hg19::chr3:30442082..30442087,-#_692c0263db1d68576fc64eaecd1f9d96p@chr3:30442082..30442087, -
2.39e-66FFCP PHASE1:Hg19::chr10:63700076..63700086,+#_692c0263db1d68576fc64eaecd1f9d96p@chr10:63700076..63700086, +
2.39e-66FFCP PHASE2:Hg19::chr6:109702786..109702795,-#_692c0263db1d68576fc64eaecd1f9d96p21@CD164
2.39e-66FFCP PHASE2:Hg19::chr1:192407901..192407907,-#_692c0263db1d68576fc64eaecd1f9d96p@chr1:192407901..192407907, -
2.39e-66FFCP PHASE1:Hg19::chr3:30570717..30570723,-#_692c0263db1d68576fc64eaecd1f9d96p@chr3:30570717..30570723, -
2.39e-66FFCP PHASE2:Hg19::chr9:79634044..79634053,-#_692c0263db1d68576fc64eaecd1f9d96p@chr9:79634044..79634053, -
2.39e-66FFCP PHASE2:Hg19::chr2:190023542..190023552,-#_692c0263db1d68576fc64eaecd1f9d96p@chr2:190023542..190023552, -
2.39e-66FFCP PHASE2:Hg19::chr1:43637641..43637648,-#_692c0263db1d68576fc64eaecd1f9d96p16@EBNA1BP2
2.39e-66FFCP PHASE2:Hg19::chr11:30257128..30257133,-#_692c0263db1d68576fc64eaecd1f9d96p@chr11:30257128..30257133, -
2.39e-66FFCP PHASE1:Hg19::chr1:197889977..197890013,+#_692c0263db1d68576fc64eaecd1f9d96p@chr1:197889977..197890013, +
2.39e-66FFCP PHASE1:Hg19::chr13:24914614..24914622,-#_692c0263db1d68576fc64eaecd1f9d96p@chr13:24914614..24914622, -
2.39e-66FFCP PHASE2:Hg19::chr3:2141775..2141783,-#_692c0263db1d68576fc64eaecd1f9d96p@chr3:2141775..2141783, -
2.39e-66FFCP PHASE1:Hg19::chr10:33244345..33244348,-#_692c0263db1d68576fc64eaecd1f9d96p@chr10:33244345..33244348, -
2.39e-66FFCP PHASE1:Hg19::chr5:128083909..128083918,+#_692c0263db1d68576fc64eaecd1f9d96p@chr5:128083909..128083918, +
2.39e-66FFCP PHASE1:Hg19::chr3:2141888..2141892,-#_692c0263db1d68576fc64eaecd1f9d96p@chr3:2141888..2141892, -
2.39e-66FFCP PHASE1:Hg19::chr14:83319766..83319776,-#_692c0263db1d68576fc64eaecd1f9d96p@chr14:83319766..83319776, -
2.39e-66FFCP PHASE2:Hg19::chr9:18993581..18993586,-#_692c0263db1d68576fc64eaecd1f9d96p@chr9:18993581..18993586, -
2.39e-66FFCP PHASE1:Hg19::chr3:106921055..106921063,-#_692c0263db1d68576fc64eaecd1f9d96p@chr3:106921055..106921063, -
2.39e-66FFCP PHASE1:Hg19::chr11:30253410..30253431,+#_692c0263db1d68576fc64eaecd1f9d96p2@FSHB
2.39e-66FFCP PHASE2:Hg19::chr8:107074411..107074421,+#_692c0263db1d68576fc64eaecd1f9d96p@chr8:107074411..107074421, +
2.39e-66FFCP PHASE2:Hg19::chr6:152589452..152589462,-#_692c0263db1d68576fc64eaecd1f9d96p43@SYNE1
2.39e-66FFCP PHASE2:Hg19::chr2:175629357..175629367,-#_692c0263db1d68576fc64eaecd1f9d96p6@CHRNA1
2.39e-66FFCP PHASE1:Hg19::chr6:142987388..142987398,-#_692c0263db1d68576fc64eaecd1f9d96p@chr6:142987388..142987398, -
2.39e-66FFCP PHASE2:Hg19::chr3:2140207..2140208,+#_692c0263db1d68576fc64eaecd1f9d96p34@CNTN4
2.39e-66FFCP PHASE2:Hg19::chr20:36848135..36848142,-#_692c0263db1d68576fc64eaecd1f9d96p@chr20:36848135..36848142, -
2.39e-66FFCP PHASE2:Hg19::chr1:154942376..154942386,-#_692c0263db1d68576fc64eaecd1f9d96p@chr1:154942376..154942386, -
2.39e-66FFCP PHASE2:Hg19::chr3:99680705..99680734,+#_692c0263db1d68576fc64eaecd1f9d96p@chr3:99680705..99680734, +
2.39e-66FFCP PHASE2:Hg19::chr6:150740842..150740854,+#_692c0263db1d68576fc64eaecd1f9d96p@chr6:150740842..150740854, +
2.39e-66FFCP PHASE2:Hg19::chr12:79920639..79920642,-#_692c0263db1d68576fc64eaecd1f9d96p@chr12:79920639..79920642, -
2.39e-66FFCP PHASE1:Hg19::chr15:96181408..96181419,-#_692c0263db1d68576fc64eaecd1f9d96p@chr15:96181408..96181419, -
2.39e-66FFCP PHASE2:Hg19::chrX:135338397..135338402,-#_692c0263db1d68576fc64eaecd1f9d96p@chrX:135338397..135338402, -
2.39e-66FFCP PHASE2:Hg19::chr15:96181421..96181428,-#_692c0263db1d68576fc64eaecd1f9d96p@chr15:96181421..96181428, -
2.39e-66FFCP PHASE1:Hg19::chr3:157230506..157230511,+#_692c0263db1d68576fc64eaecd1f9d96p@chr3:157230506..157230511, +
2.39e-66FFCP PHASE2:Hg19::chr12:108955070..108955084,-#_692c0263db1d68576fc64eaecd1f9d96p16@SART3
2.39e-66FFCP PHASE1:Hg19::chr12:70351971..70351975,+#_692c0263db1d68576fc64eaecd1f9d96p@chr12:70351971..70351975, +
2.39e-66FFCP PHASE1:Hg19::chr1:158989981..158989988,+#_692c0263db1d68576fc64eaecd1f9d96p@chr1:158989981..158989988, +
2.39e-66FFCP PHASE2:Hg19::chr3:1577628..1577634,-#_692c0263db1d68576fc64eaecd1f9d96p@chr3:1577628..1577634, -
2.39e-66FFCP PHASE2:Hg19::chr2:206927652..206927658,-#_692c0263db1d68576fc64eaecd1f9d96p@chr2:206927652..206927658, -
2.39e-66FFCP PHASE2:Hg19::chr13:23368370..23368374,+#_692c0263db1d68576fc64eaecd1f9d96p@chr13:23368370..23368374, +
2.39e-66FFCP PHASE1:Hg19::chr6:152589345..152589353,-#_692c0263db1d68576fc64eaecd1f9d96p63@SYNE1
2.39e-66FFCP PHASE1:Hg19::chr4:169935479..169935481,-#_692c0263db1d68576fc64eaecd1f9d96p@chr4:169935479..169935481, -
2.39e-66FFCP PHASE2:Hg19::chr3:2141862..2141887,-#_692c0263db1d68576fc64eaecd1f9d96p@chr3:2141862..2141887, -
2.39e-66FFCP PHASE1:Hg19::chr3:2139856..2139863,+#_692c0263db1d68576fc64eaecd1f9d96p@chr3:2139856..2139863, +
2.39e-66FFCP PHASE2:Hg19::chr4:139817600..139817609,-#_692c0263db1d68576fc64eaecd1f9d96p@chr4:139817600..139817609, -
2.39e-66FFCP PHASE2:Hg19::chr3:157221979..157222025,-#_692c0263db1d68576fc64eaecd1f9d96p@chr3:157221979..157222025, -
2.39e-66FFCP PHASE1:Hg19::chr9:13006722..13006729,-#_692c0263db1d68576fc64eaecd1f9d96p@chr9:13006722..13006729, -
2.39e-66FFCP PHASE2:Hg19::chr6:152592460..152592465,-#_692c0263db1d68576fc64eaecd1f9d96p@chr6:152592460..152592465, -
2.39e-66FFCP PHASE2:Hg19::chr2:188420470..188420480,+#_692c0263db1d68576fc64eaecd1f9d96p@chr2:188420470..188420480, +
2.39e-66FFCP PHASE1:Hg19::chr6:150735014..150735021,-#_692c0263db1d68576fc64eaecd1f9d96p@chr6:150735014..150735021, -
2.39e-66FFCP PHASE1:Hg19::chr4:145101707..145101712,+#_692c0263db1d68576fc64eaecd1f9d96p@chr4:145101707..145101712, +
2.39e-66FFCP PHASE1:Hg19::chr1:197886803..197886812,+#_692c0263db1d68576fc64eaecd1f9d96p7@LHX9
2.39e-66FFCP PHASE2:Hg19::chr1:112916133..112916138,-#_692c0263db1d68576fc64eaecd1f9d96p@chr1:112916133..112916138, -
2.39e-66FFCP PHASE1:Hg19::chrX:135338329..135338337,-#_692c0263db1d68576fc64eaecd1f9d96p@chrX:135338329..135338337, -
2.39e-66FFCP PHASE2:Hg19::chr3:2141993..2142006,+#_692c0263db1d68576fc64eaecd1f9d96p6@CNTN4

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