UBERON:0004755
From FANTOM5_SSTAR
Name: | skeletal tissue | ||
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Namespace: | FANTOM | ||
Definition: | "Connective tissue that functions in mechanical and structural support." [VSAO:0000015] | ||
Xrefs: |
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Synonyms: | "mineralized tissue" NARROW [] | ||
Comments: | Four classes of mineralized tissues are found in vertebrates: bone, cartilage, dentine, and enamel. We think of cartilage and bone as skeletal tissues and of enamel and dentine as dental tissues, but enamel and dentine arose evolutionarily together with bone as skeletal tissues in the dermal skeleton (exoskeleton) of early vertebrates. Scales and teeth of sharks are examples of dermal skeletal elements that are still composed of the three ancient components-enamel, dentine, and bone. Cartilage, on the other hand, provided the basis for the second vertebrate skeletal system, the endoskeleton (Smith and Hall, 1990; Hall, 1998a,b). some invertebrate skeletal tissues have surprisingly bone-like features. Examples include chondrocytes interconnected by cell processes in cephalopod cartilages (Cole and Hall, 2004a,b), and the calcium phosphate layer in the shells of brachiopods (Rodland et al., 2003). However, neither bone nor mineralized cartilage have been found in invertebrates. Editors notes: TODO - develops_from |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
is_a: | UBERON:0002384(connective tissue) |
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part_of: | UBERON:0004765(skeletal element) |
Children
is a: | UBERON:0002418 (cartilage tissue),UBERON:0002481 (bone tissue) |
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disjoint from: | UBERON:0003714 (neural tissue) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10410-106B5 (extraskeletal myxoid chondrosarcoma cell line:H-EMC-SS)
- 10700-109G7 (chondrosarcoma cell line:SW 1353)
- 10720-109I9
- 10767-110F2
- 11248-116E6 (Anulus Pulposus Cell, donor1)
- 11463-119B5 (Anulus Pulposus Cell, donor2)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0004755 (skeletal tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
P-value | FFCP | Short description |
---|---|---|
1.71e-66 | FFCP PHASE1:Hg19::chr1:78769549..78769554,+#_59826314079ec5dfd333c5f6c965f16c | p5@PTGFR |
1.71e-66 | FFCP PHASE2:Hg19::chr1:78769549..78769554,+#_59826314079ec5dfd333c5f6c965f16c | p5@PTGFR |
2.39e-66 | FFCP PHASE1:Hg19::chr6:152592460..152592465,-#_7052249764c66f22cd325eeb139b417e | p@chr6:152592460..152592465, - |
2.39e-66 | FFCP PHASE2:Hg19::chr1:154942216..154942223,-#_7052249764c66f22cd325eeb139b417e | p@chr1:154942216..154942223, - |
2.39e-66 | FFCP PHASE2:Hg19::chr6:150735340..150735361,+#_7052249764c66f22cd325eeb139b417e | p@chr6:150735340..150735361, + |
2.39e-66 | FFCP PHASE1:Hg19::chr12:70351971..70351975,+#_7052249764c66f22cd325eeb139b417e | p@chr12:70351971..70351975, + |
2.39e-66 | FFCP PHASE2:Hg19::chr12:79920595..79920605,-#_7052249764c66f22cd325eeb139b417e | p@chr12:79920595..79920605, - |
2.39e-66 | FFCP PHASE2:Hg19::chr3:177555440..177555446,-#_7052249764c66f22cd325eeb139b417e | p@chr3:177555440..177555446, - |
2.39e-66 | FFCP PHASE2:Hg19::chr15:96181408..96181419,-#_7052249764c66f22cd325eeb139b417e | p@chr15:96181408..96181419, - |
2.39e-66 | FFCP PHASE1:Hg19::chr7:80080929..80080934,+#_7052249764c66f22cd325eeb139b417e | p@chr7:80080929..80080934, + |
2.39e-66 | FFCP PHASE1:Hg19::chr3:157221979..157222025,-#_7052249764c66f22cd325eeb139b417e | p@chr3:157221979..157222025, - |
2.39e-66 | FFCP PHASE2:Hg19::chr3:2141851..2141858,-#_7052249764c66f22cd325eeb139b417e | p@chr3:2141851..2141858, - |
2.39e-66 | FFCP PHASE1:Hg19::chr3:196296715..196296737,-#_7052249764c66f22cd325eeb139b417e | p@chr3:196296715..196296737, - |
2.39e-66 | FFCP PHASE1:Hg19::chr2:206927691..206927699,-#_7052249764c66f22cd325eeb139b417e | p@chr2:206927691..206927699, - |
2.39e-66 | FFCP PHASE2:Hg19::chr3:1577586..1577600,-#_7052249764c66f22cd325eeb139b417e | p@chr3:1577586..1577600, - |
2.39e-66 | FFCP PHASE2:Hg19::chr18:74961699..74961708,+#_7052249764c66f22cd325eeb139b417e | p5@GALR1 |
2.39e-66 | FFCP PHASE1:Hg19::chr9:18504821..18504825,+#_7052249764c66f22cd325eeb139b417e | p@chr9:18504821..18504825, + |
2.39e-66 | FFCP PHASE1:Hg19::chr6:152589315..152589320,-#_7052249764c66f22cd325eeb139b417e | p72@SYNE1 |
2.39e-66 | FFCP PHASE1:Hg19::chr4:169935453..169935460,-#_7052249764c66f22cd325eeb139b417e | p@chr4:169935453..169935460, - |
2.39e-66 | FFCP PHASE1:Hg19::chrX:135338270..135338275,-#_7052249764c66f22cd325eeb139b417e | p@chrX:135338270..135338275, - |
2.39e-66 | FFCP PHASE1:Hg19::chr3:170537826..170537835,+#_7052249764c66f22cd325eeb139b417e | p@chr3:170537826..170537835, + |
2.39e-66 | FFCP PHASE2:Hg19::chr3:2141982..2141990,+#_7052249764c66f22cd325eeb139b417e | p16@CNTN4 |
2.39e-66 | FFCP PHASE1:Hg19::chr13:23368370..23368374,+#_7052249764c66f22cd325eeb139b417e | p@chr13:23368370..23368374, + |
2.39e-66 | FFCP PHASE2:Hg19::chr2:53436150..53436154,-#_7052249764c66f22cd325eeb139b417e | p@chr2:53436150..53436154, - |
2.39e-66 | FFCP PHASE1:Hg19::chr5:109694595..109694599,+#_7052249764c66f22cd325eeb139b417e | p@chr5:109694595..109694599, + |
2.39e-66 | FFCP PHASE2:Hg19::chr4:139817573..139817580,-#_7052249764c66f22cd325eeb139b417e | p@chr4:139817573..139817580, - |
2.39e-66 | FFCP PHASE1:Hg19::chr9:13005000..13005036,-#_7052249764c66f22cd325eeb139b417e | p@chr9:13005000..13005036, - |
2.39e-66 | FFCP PHASE2:Hg19::chr2:188420455..188420469,+#_7052249764c66f22cd325eeb139b417e | p@chr2:188420455..188420469, + |
2.39e-66 | FFCP PHASE2:Hg19::chr13:24914614..24914622,-#_7052249764c66f22cd325eeb139b417e | p@chr13:24914614..24914622, - |
2.39e-66 | FFCP PHASE1:Hg19::chr1:112916133..112916138,-#_7052249764c66f22cd325eeb139b417e | p@chr1:112916133..112916138, - |
2.39e-66 | FFCP PHASE1:Hg19::chr3:2141785..2141802,-#_7052249764c66f22cd325eeb139b417e | p@chr3:2141785..2141802, - |
2.39e-66 | FFCP PHASE1:Hg19::chr7:18439510..18439521,+#_7052249764c66f22cd325eeb139b417e | p@chr7:18439510..18439521, + |
2.39e-66 | FFCP PHASE2:Hg19::chr6:152589291..152589303,-#_7052249764c66f22cd325eeb139b417e | p38@SYNE1 |
2.39e-66 | FFCP PHASE1:Hg19::chr3:157231406..157231414,-#_7052249764c66f22cd325eeb139b417e | p@chr3:157231406..157231414, - |
2.39e-66 | FFCP PHASE1:Hg19::chr1:228783266..228783269,-#_7052249764c66f22cd325eeb139b417e | p@chr1:228783266..228783269, - |
2.39e-66 | FFCP PHASE1:Hg19::chr3:2140234..2140235,+#_7052249764c66f22cd325eeb139b417e | p36@CNTN4 |
2.39e-66 | FFCP PHASE2:Hg19::chr9:12848028..12848033,-#_7052249764c66f22cd325eeb139b417e | p@chr9:12848028..12848033, - |
2.39e-66 | FFCP PHASE2:Hg19::chr12:71031310..71031321,-#_7052249764c66f22cd325eeb139b417e | p14@PTPRB |
2.39e-66 | FFCP PHASE1:Hg19::chr5:33361438..33361453,-#_7052249764c66f22cd325eeb139b417e | p@chr5:33361438..33361453, - |
2.39e-66 | FFCP PHASE1:Hg19::chr3:99508248..99508255,-#_7052249764c66f22cd325eeb139b417e | p@chr3:99508248..99508255, - |
2.39e-66 | FFCP PHASE1:Hg19::chr7:79999046..79999051,+#_7052249764c66f22cd325eeb139b417e | p41@CD36 |
2.39e-66 | FFCP PHASE1:Hg19::chr11:30257128..30257133,-#_7052249764c66f22cd325eeb139b417e | p@chr11:30257128..30257133, - |
2.39e-66 | FFCP PHASE2:Hg19::chr3:2141775..2141783,-#_7052249764c66f22cd325eeb139b417e | p@chr3:2141775..2141783, - |
2.39e-66 | FFCP PHASE2:Hg19::chr3:30442082..30442087,-#_7052249764c66f22cd325eeb139b417e | p@chr3:30442082..30442087, - |
2.39e-66 | FFCP PHASE1:Hg19::chr13:23733478..23733489,-#_7052249764c66f22cd325eeb139b417e | p@chr13:23733478..23733489, - |
2.39e-66 | FFCP PHASE2:Hg19::chr6:109702786..109702795,-#_7052249764c66f22cd325eeb139b417e | p21@CD164 |
2.39e-66 | FFCP PHASE2:Hg19::chr1:192407901..192407907,-#_7052249764c66f22cd325eeb139b417e | p@chr1:192407901..192407907, - |
2.39e-66 | FFCP PHASE1:Hg19::chr3:30570717..30570723,-#_7052249764c66f22cd325eeb139b417e | p@chr3:30570717..30570723, - |
2.39e-66 | FFCP PHASE2:Hg19::chr9:79634044..79634053,-#_7052249764c66f22cd325eeb139b417e | p@chr9:79634044..79634053, - |
2.39e-66 | FFCP PHASE1:Hg19::chr18:22251681..22251685,-#_7052249764c66f22cd325eeb139b417e | p@chr18:22251681..22251685, - |
2.39e-66 | FFCP PHASE2:Hg19::chr2:190023542..190023552,-#_7052249764c66f22cd325eeb139b417e | p@chr2:190023542..190023552, - |
2.39e-66 | FFCP PHASE2:Hg19::chr1:43637641..43637648,-#_7052249764c66f22cd325eeb139b417e | p16@EBNA1BP2 |
2.39e-66 | FFCP PHASE2:Hg19::chr11:30257128..30257133,-#_7052249764c66f22cd325eeb139b417e | p@chr11:30257128..30257133, - |
2.39e-66 | FFCP PHASE1:Hg19::chr1:197889977..197890013,+#_7052249764c66f22cd325eeb139b417e | p@chr1:197889977..197890013, + |
2.39e-66 | FFCP PHASE1:Hg19::chr15:96181421..96181428,-#_7052249764c66f22cd325eeb139b417e | p@chr15:96181421..96181428, - |
2.39e-66 | FFCP PHASE1:Hg19::chr5:128083909..128083918,+#_7052249764c66f22cd325eeb139b417e | p@chr5:128083909..128083918, + |
2.39e-66 | FFCP PHASE1:Hg19::chr3:2141888..2141892,-#_7052249764c66f22cd325eeb139b417e | p@chr3:2141888..2141892, - |
2.39e-66 | FFCP PHASE2:Hg19::chr9:18993581..18993586,-#_7052249764c66f22cd325eeb139b417e | p@chr9:18993581..18993586, - |
2.39e-66 | FFCP PHASE1:Hg19::chr3:106921055..106921063,-#_7052249764c66f22cd325eeb139b417e | p@chr3:106921055..106921063, - |
2.39e-66 | FFCP PHASE2:Hg19::chr8:107074411..107074421,+#_7052249764c66f22cd325eeb139b417e | p@chr8:107074411..107074421, + |
2.39e-66 | FFCP PHASE2:Hg19::chr6:152589452..152589462,-#_7052249764c66f22cd325eeb139b417e | p43@SYNE1 |
2.39e-66 | FFCP PHASE2:Hg19::chr2:175629357..175629367,-#_7052249764c66f22cd325eeb139b417e | p6@CHRNA1 |
2.39e-66 | FFCP PHASE1:Hg19::chr6:142987388..142987398,-#_7052249764c66f22cd325eeb139b417e | p@chr6:142987388..142987398, - |
2.39e-66 | FFCP PHASE2:Hg19::chr3:2140207..2140208,+#_7052249764c66f22cd325eeb139b417e | p34@CNTN4 |
2.39e-66 | FFCP PHASE2:Hg19::chr12:108955070..108955084,-#_7052249764c66f22cd325eeb139b417e | p16@SART3 |
2.39e-66 | FFCP PHASE2:Hg19::chr20:36848135..36848142,-#_7052249764c66f22cd325eeb139b417e | p@chr20:36848135..36848142, - |
2.39e-66 | FFCP PHASE2:Hg19::chr1:154942376..154942386,-#_7052249764c66f22cd325eeb139b417e | p@chr1:154942376..154942386, - |
2.39e-66 | FFCP PHASE2:Hg19::chr3:99680705..99680734,+#_7052249764c66f22cd325eeb139b417e | p@chr3:99680705..99680734, + |
2.39e-66 | FFCP PHASE2:Hg19::chr6:150740842..150740854,+#_7052249764c66f22cd325eeb139b417e | p@chr6:150740842..150740854, + |
2.39e-66 | FFCP PHASE2:Hg19::chr12:79920639..79920642,-#_7052249764c66f22cd325eeb139b417e | p@chr12:79920639..79920642, - |
2.39e-66 | FFCP PHASE2:Hg19::chrX:135338397..135338402,-#_7052249764c66f22cd325eeb139b417e | p@chrX:135338397..135338402, - |
2.39e-66 | FFCP PHASE2:Hg19::chr15:96181421..96181428,-#_7052249764c66f22cd325eeb139b417e | p@chr15:96181421..96181428, - |
2.39e-66 | FFCP PHASE1:Hg19::chr3:157230506..157230511,+#_7052249764c66f22cd325eeb139b417e | p@chr3:157230506..157230511, + |
2.39e-66 | FFCP PHASE1:Hg19::chr4:169935479..169935481,-#_7052249764c66f22cd325eeb139b417e | p@chr4:169935479..169935481, - |
2.39e-66 | FFCP PHASE2:Hg19::chr3:2141862..2141887,-#_7052249764c66f22cd325eeb139b417e | p@chr3:2141862..2141887, - |
2.39e-66 | FFCP PHASE1:Hg19::chr3:2139856..2139863,+#_7052249764c66f22cd325eeb139b417e | p@chr3:2139856..2139863, + |
2.39e-66 | FFCP PHASE1:Hg19::chr1:158989981..158989988,+#_7052249764c66f22cd325eeb139b417e | p@chr1:158989981..158989988, + |
2.39e-66 | FFCP PHASE1:Hg19::chr18:22253588..22253590,+#_7052249764c66f22cd325eeb139b417e | p@chr18:22253588..22253590, + |
2.39e-66 | FFCP PHASE2:Hg19::chr3:1577628..1577634,-#_7052249764c66f22cd325eeb139b417e | p@chr3:1577628..1577634, - |
2.39e-66 | FFCP PHASE2:Hg19::chr2:206927652..206927658,-#_7052249764c66f22cd325eeb139b417e | p@chr2:206927652..206927658, - |
2.39e-66 | FFCP PHASE2:Hg19::chr13:23368370..23368374,+#_7052249764c66f22cd325eeb139b417e | p@chr13:23368370..23368374, + |
2.39e-66 | FFCP PHASE1:Hg19::chr6:152589345..152589353,-#_7052249764c66f22cd325eeb139b417e | p63@SYNE1 |
2.39e-66 | FFCP PHASE2:Hg19::chr1:112916133..112916138,-#_7052249764c66f22cd325eeb139b417e | p@chr1:112916133..112916138, - |
2.39e-66 | FFCP PHASE1:Hg19::chrX:135338329..135338337,-#_7052249764c66f22cd325eeb139b417e | p@chrX:135338329..135338337, - |
2.39e-66 | FFCP PHASE2:Hg19::chr3:2141993..2142006,+#_7052249764c66f22cd325eeb139b417e | p6@CNTN4 |
2.39e-66 | FFCP PHASE2:Hg19::chr4:139817600..139817609,-#_7052249764c66f22cd325eeb139b417e | p@chr4:139817600..139817609, - |
2.39e-66 | FFCP PHASE2:Hg19::chr3:157221979..157222025,-#_7052249764c66f22cd325eeb139b417e | p@chr3:157221979..157222025, - |
2.39e-66 | FFCP PHASE1:Hg19::chr9:13006722..13006729,-#_7052249764c66f22cd325eeb139b417e | p@chr9:13006722..13006729, - |
2.39e-66 | FFCP PHASE2:Hg19::chr6:152592460..152592465,-#_7052249764c66f22cd325eeb139b417e | p@chr6:152592460..152592465, - |
2.39e-66 | FFCP PHASE1:Hg19::chr12:79920595..79920605,-#_7052249764c66f22cd325eeb139b417e | p@chr12:79920595..79920605, - |
2.39e-66 | FFCP PHASE2:Hg19::chr2:188420470..188420480,+#_7052249764c66f22cd325eeb139b417e | p@chr2:188420470..188420480, + |
2.39e-66 | FFCP PHASE1:Hg19::chr6:150735014..150735021,-#_7052249764c66f22cd325eeb139b417e | p@chr6:150735014..150735021, - |
2.39e-66 | FFCP PHASE1:Hg19::chr4:145101707..145101712,+#_7052249764c66f22cd325eeb139b417e | p@chr4:145101707..145101712, + |
2.39e-66 | FFCP PHASE1:Hg19::chr1:197886803..197886812,+#_7052249764c66f22cd325eeb139b417e | p7@LHX9 |
2.39e-66 | FFCP PHASE1:Hg19::chr13:23027835..23027846,+#_7052249764c66f22cd325eeb139b417e | p@chr13:23027835..23027846, + |
2.39e-66 | FFCP PHASE2:Hg19::chr12:46660412..46660420,-#_7052249764c66f22cd325eeb139b417e | p38@SLC38A1 |
2.39e-66 | FFCP PHASE2:Hg19::chr7:18439468..18439477,+#_7052249764c66f22cd325eeb139b417e | p@chr7:18439468..18439477, + |
2.39e-66 | FFCP PHASE1:Hg19::chr1:113250450..113250457,-#_7052249764c66f22cd325eeb139b417e | p18@RHOC |
2.39e-66 | FFCP PHASE1:Hg19::chr3:2141813..2141822,-#_7052249764c66f22cd325eeb139b417e | p@chr3:2141813..2141822, - |
2.39e-66 | FFCP PHASE2:Hg19::chr9:18504821..18504825,+#_7052249764c66f22cd325eeb139b417e | p@chr9:18504821..18504825, + |