Personal tools

UBERON:0003060: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{UBERON |id=UBERON:0003060 |name=pronephric duct |namespace= |def="In mammals, the pronephric duct is the predecessor of the Wolffian duct[WP]." [Wikipedia:Pronephric_duc...")
 
No edit summary
Line 21: Line 21:
|part_of=UBERON:0002120
|part_of=UBERON:0002120
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl
|is_obsolete=
|preceded_by=
}}
}}

Revision as of 17:17, 15 June 2012

Name:pronephric duct
Definition:"In mammals, the pronephric duct is the predecessor of the Wolffian duct[WP]." [Wikipedia:Pronephric_duct]
Xrefs:
links:

AAO:0011088
ncithesaurus:Pronephric_Duct
SCTID:361406002
TAO:0000150
VHOG:0000082
XAO:0000063

ZFA:0000150
Synonyms: "archinephric duct" RELATED [VHOG:0000082]
Alt_id: UBERON:XAO_0000063-ZFA_0000150
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0009201(nephric duct)
develops_from:UBERON:0003064(intermediate mesoderm),UBERON:0005721(pronephric mesoderm)
part_of:UBERON:0002120(pronephros)



Children

develops from:UBERON:0003074 (mesonephric duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology



Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003060 (pronephric duct), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
1.58e-86FFCP PHASE2:Mm9::chr18:44264202..44264213,+#_17f9453cc1074c62296fe60e07a39be4p4@Spink12
1.58e-86FFCP PHASE1:Mm9::chr18:44264202..44264213,+#_17f9453cc1074c62296fe60e07a39be4p4@Spink12
3.28e-58FFCP PHASE1:Mm9::chr9:65941913..65941923,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr9:65941913..65941923, -
3.28e-58FFCP PHASE1:Mm9::chr2:152302813..152302821,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep3@Defb20
3.28e-58FFCP PHASE2:Mm9::chr2:75866210..75866235,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr2:75866210..75866235, +
3.28e-58FFCP PHASE2:Mm9::chr2:164479340..164479350,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr2:164479340..164479350, +
3.28e-58FFCP PHASE1:Mm9::chr13:21379065..21379072,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr13:21379065..21379072, -
3.28e-58FFCP PHASE2:Mm9::chr17:24670830..24670845,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr17:24670830..24670845, +
3.28e-58FFCP PHASE1:Mm9::chr8:19141371..19141383,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr8:19141371..19141383, +
3.28e-58FFCP PHASE2:Mm9::chr1:89596972..89596981,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr1:89596972..89596981, +
3.28e-58FFCP PHASE2:Mm9::chr12:16663110..16663116,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep3@Ntsr2
3.28e-58FFCP PHASE1:Mm9::chr17:35249011..35249020,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr17:35249011..35249020, -
3.28e-58FFCP PHASE1:Mm9::chr12:103896072..103896081,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr12:103896072..103896081, -
3.28e-58FFCP PHASE2:Mm9::chr8:96014490..96014496,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr8:96014490..96014496, +
3.28e-58FFCP PHASE1:Mm9::chrX:130496372..130496393,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chrX:130496372..130496393, -
3.28e-58FFCP PHASE2:Mm9::chr8:23057222..23057234,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep1@Defb13
3.28e-58FFCP PHASE1:Mm9::chr2:160573108..160573123,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr2:160573108..160573123, +
3.28e-58FFCP PHASE2:Mm9::chr13:21378774..21378782,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr13:21378774..21378782, -
3.28e-58FFCP PHASE2:Mm9::chr11:101959194..101959224,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr11:101959194..101959224, -
3.28e-58FFCP PHASE1:Mm9::chr1:89597834..89597840,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr1:89597834..89597840, +
3.28e-58FFCP PHASE2:Mm9::chr2:152302768..152302774,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep4@Defb20
3.28e-58FFCP PHASE1:Mm9::chr2:74440187..74440209,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr2:74440187..74440209, -
3.28e-58FFCP PHASE2:Mm9::chr6:54359310..54359337,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr6:54359310..54359337, -
3.28e-58FFCP PHASE1:Mm9::chr5:31379550..31379559,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr5:31379550..31379559, +
3.28e-58FFCP PHASE2:Mm9::chr13:21383212..21383225,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr13:21383212..21383225, -
3.28e-58FFCP PHASE2:Mm9::chr14:66521865..66521876,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr14:66521865..66521876, +
3.28e-58FFCP PHASE2:Mm9::chr5:75559819..75559830,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr5:75559819..75559830, +
3.28e-58FFCP PHASE1:Mm9::chr2:148676859..148676866,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep5@9230104L09Rik
3.28e-58FFCP PHASE2:Mm9::chr17:14306714..14306740,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr17:14306714..14306740, +
3.28e-58FFCP PHASE2:Mm9::chr2:148676859..148676866,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep5@9230104L09Rik
3.28e-58FFCP PHASE1:Mm9::chrX:12571679..12571688,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chrX:12571679..12571688, -
3.28e-58FFCP PHASE1:Mm9::chr9:26730625..26730636,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep3@Gm1110
3.28e-58FFCP PHASE2:Mm9::chr3:103650758..103650778,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr3:103650758..103650778, +
3.28e-58FFCP PHASE1:Mm9::chr1:87922962..87922982,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr1:87922962..87922982, +
3.28e-58FFCP PHASE2:Mm9::chr10:127470322..127470326,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr10:127470322..127470326, +
3.28e-58FFCP PHASE2:Mm9::chr4:40010825..40010844,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr4:40010825..40010844, -
3.28e-58FFCP PHASE2:Mm9::chr10:56515486..56515496,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr10:56515486..56515496, +
3.28e-58FFCP PHASE2:Mm9::chr8:113585714..113585722,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr8:113585714..113585722, -
3.28e-58FFCP PHASE1:Mm9::chr5:31377177..31377184,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr5:31377177..31377184, +
3.28e-58FFCP PHASE2:Mm9::chr13:21379306..21379315,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr13:21379306..21379315, -
3.28e-58FFCP PHASE2:Mm9::chr9:35651788..35651804,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep1@9230110F15Rik
3.28e-58FFCP PHASE2:Mm9::chr2:172632171..172632178,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr2:172632171..172632178, -
3.28e-58FFCP PHASE2:Mm9::chr2:167480413..167480463,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr2:167480413..167480463, -
3.28e-58FFCP PHASE1:Mm9::chr9:56469136..56469145,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr9:56469136..56469145, -
3.28e-58FFCP PHASE2:Mm9::chrX:20422498..20422506,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chrX:20422498..20422506, +
3.28e-58FFCP PHASE1:Mm9::chr4:150092027..150092070,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr4:150092027..150092070, -
3.28e-58FFCP PHASE1:Mm9::chr3:103650730..103650741,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr3:103650730..103650741, +
3.28e-58FFCP PHASE1:Mm9::chr1:165219453..165219469,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep11@Prrx1
3.28e-58FFCP PHASE1:Mm9::chr18:62775330..62775347,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr18:62775330..62775347, -
3.28e-58FFCP PHASE2:Mm9::chr2:25349414..25349424,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep5@Lcn12
3.28e-58FFCP PHASE2:Mm9::chr2:164439019..164439029,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep1@Wfdc6b
3.28e-58FFCP PHASE2:Mm9::chrX:130496372..130496393,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chrX:130496372..130496393, -
3.28e-58FFCP PHASE1:Mm9::chr2:172632171..172632178,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr2:172632171..172632178, -
3.28e-58FFCP PHASE2:Mm9::chr13:23683348..23683398,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr13:23683348..23683398, +
3.28e-58FFCP PHASE2:Mm9::chr8:19141429..19141440,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr8:19141429..19141440, +
3.28e-58FFCP PHASE2:Mm9::chr9:34813361..34813403,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr9:34813361..34813403, -
3.28e-58FFCP PHASE1:Mm9::chr14:52608712..52608739,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep11@Arhgef40
3.28e-58FFCP PHASE1:Mm9::chr13:21379372..21379404,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr13:21379372..21379404, +
3.28e-58FFCP PHASE2:Mm9::chr1:90155966..90155989,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr1:90155966..90155989, +
3.28e-58FFCP PHASE2:Mm9::chr14:51627616..51627623,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep2@Rnase10
3.28e-58FFCP PHASE1:Mm9::chr9:35651679..35651691,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep5@9230110F15Rik
3.28e-58FFCP PHASE2:Mm9::chrX:103276578..103276585,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chrX:103276578..103276585, +
3.28e-58FFCP PHASE2:Mm9::chr13:21379118..21379120,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr13:21379118..21379120, -
3.28e-58FFCP PHASE2:Mm9::chr9:35585507..35585517,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep4@Gm17727
3.28e-58FFCP PHASE1:Mm9::chr11:116901629..116901639,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep3@uc007mmw.1
3.28e-58FFCP PHASE2:Mm9::chr11:59845376..59845393,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr11:59845376..59845393, -
3.28e-58FFCP PHASE2:Mm9::chr18:74784728..74784738,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr18:74784728..74784738, +
3.28e-58FFCP PHASE2:Mm9::chr9:26688157..26688159,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr9:26688157..26688159, -
3.28e-58FFCP PHASE2:Mm9::chr14:52542661..52542668,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep3@Rnase13
3.28e-58FFCP PHASE2:Mm9::chr14:103746280..103746298,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr14:103746280..103746298, +
3.28e-58FFCP PHASE2:Mm9::chr18:44264128..44264135,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep5@Spink12
3.28e-58FFCP PHASE2:Mm9::chr6:118298429..118298448,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr6:118298429..118298448, +
3.28e-58FFCP PHASE1:Mm9::chr14:51734060..51734066,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep5@Eddm3b
3.28e-58FFCP PHASE1:Mm9::chr13:21379159..21379162,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr13:21379159..21379162, -
3.28e-58FFCP PHASE1:Mm9::chr8:19142604..19142612,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr8:19142604..19142612, +
3.28e-58FFCP PHASE2:Mm9::chr1:89597834..89597840,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr1:89597834..89597840, +
3.28e-58FFCP PHASE2:Mm9::chr11:116901629..116901639,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep3@uc007mmw.1
3.28e-58FFCP PHASE2:Mm9::chr13:21378871..21378901,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr13:21378871..21378901, -
3.28e-58FFCP PHASE1:Mm9::chr1:90155923..90155932,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr1:90155923..90155932, +
3.28e-58FFCP PHASE1:Mm9::chr4:134913640..134913649,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr4:134913640..134913649, +
3.28e-58FFCP PHASE2:Mm9::chr13:52712744..52712754,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr13:52712744..52712754, +
3.28e-58FFCP PHASE2:Mm9::chr2:74440187..74440209,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr2:74440187..74440209, -
3.28e-58FFCP PHASE2:Mm9::chr9:26611214..26611227,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr9:26611214..26611227, -
3.28e-58FFCP PHASE1:Mm9::chr7:109379335..109379338,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep21@Pgap2
3.28e-58FFCP PHASE2:Mm9::chr5:31379477..31379481,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr5:31379477..31379481, +
3.28e-58FFCP PHASE2:Mm9::chr16:23308182..23308185,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr16:23308182..23308185, +
3.28e-58FFCP PHASE1:Mm9::chr14:51676936..51676963,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep6@Rnase12
3.28e-58FFCP PHASE2:Mm9::chr2:25678985..25679033,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr2:25678985..25679033, +
3.28e-58FFCP PHASE2:Mm9::chr14:69143309..69143319,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr14:69143309..69143319, -
3.28e-58FFCP PHASE1:Mm9::chr15:83143938..83143953,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr15:83143938..83143953, -
3.28e-58FFCP PHASE1:Mm9::chr11:101958844..101958851,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr11:101958844..101958851, -
3.28e-58FFCP PHASE1:Mm9::chrX:130496260..130496269,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chrX:130496260..130496269, -
3.28e-58FFCP PHASE2:Mm9::chrX:75798132..75798152,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chrX:75798132..75798152, -
3.28e-58FFCP PHASE1:Mm9::chr9:26785438..26785446,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep3@Acad8
3.28e-58FFCP PHASE2:Mm9::chr11:101958876..101958883,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr11:101958876..101958883, +
3.28e-58FFCP PHASE1:Mm9::chr1:89596972..89596981,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr1:89596972..89596981, +
3.28e-58FFCP PHASE2:Mm9::chr16:22504758..22504766,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr16:22504758..22504766, -
3.28e-58FFCP PHASE2:Mm9::chr9:70761931..70761971,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr9:70761931..70761971, +
3.28e-58FFCP PHASE1:Mm9::chr1:11079838..11079844,+#_5ae5a5df85554ce46d6e6a24a59f6d3ep@chr1:11079838..11079844, +
3.28e-58FFCP PHASE2:Mm9::chr14:51677141..51677148,-#_5ae5a5df85554ce46d6e6a24a59f6d3ep7@Rnase12

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0003060&oldid=1832908"