UBERON:0005169: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0005169
|name=interstitial tissue
|namespace=
|def="connective tissue between the cellular elements of a structure." [http://medical-dictionary.thefree...") |
No edit summary |
||
| Line 21: | Line 21: | ||
|part_of= | |part_of= | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.obo.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |||
|preceded_by= | |||
}} | }} | ||
Revision as of 17:21, 15 June 2012
| Name: | interstitial tissue | ||
|---|---|---|---|
| Definition: | "connective tissue between the cellular elements of a structure." [1] | ||
| Xrefs: |
| ||
| Synonyms: | "interstitium" EXACT [] | ||
| Comments: | todo - make connective tissue |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0003891(stroma) |
|---|
Children
| is a: | UBERON:0005215 (kidney interstitium) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 11518-119H6 (Renal Mesangial Cells, donor1)
- 11598-120H5 (Renal Mesangial Cells, donor2)
- 11679-122H5 (Renal Mesangial Cells, donor3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005169 (interstitial tissue), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 2.34e-79 | FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_e3d38e68bde9bf18fb2ca8b75f2cb3a8 | p@chr2:133426030..133426041, - |
| 2.34e-79 | FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_e3d38e68bde9bf18fb2ca8b75f2cb3a8 | p@chr2:133426030..133426041, - |
| 3.49e-79 | FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_ef551828da25e1aab0a2906f13b34c36 | p23@TTC39A |
| 3.49e-79 | FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_ef551828da25e1aab0a2906f13b34c36 | p23@TTC39A |
| 2.03e-66 | FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_4ae0430e30c91303f5a309481f932e3e | p@chr2:133426106..133426117, - |
| 2.03e-66 | FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_4ae0430e30c91303f5a309481f932e3e | p@chr2:133426106..133426117, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr10:134535354..134535366,-#_e4dc31026a11852be47a791f673c7801 | p@chr10:134535354..134535366, - |
| 1.46e-50 | FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_e4dc31026a11852be47a791f673c7801 | p8@PAX2 |
| 1.46e-50 | FFCP PHASE2:Hg19::chr10:134535354..134535366,-#_e4dc31026a11852be47a791f673c7801 | p@chr10:134535354..134535366, - |
| 1.46e-50 | FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_e4dc31026a11852be47a791f673c7801 | p8@PAX2 |
| 3.11e-50 | FFCP PHASE2:Hg19::chr17:17480803..17480814,-#_82253e608f6d6c5bab7975625b1742a4 | p19@PEMT |
| 3.11e-50 | FFCP PHASE1:Hg19::chr17:17480803..17480814,-#_82253e608f6d6c5bab7975625b1742a4 | p19@PEMT |
| 4.52e-50 | FFCP PHASE1:Hg19::chr9:81641483..81641491,-#_1f6afb859ecdda631726ca868d009238 | p@chr9:81641483..81641491, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_1f6afb859ecdda631726ca868d009238 | p10@PAX2 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr9:81641483..81641491,-#_1f6afb859ecdda631726ca868d009238 | p@chr9:81641483..81641491, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_1f6afb859ecdda631726ca868d009238 | p10@PAX2 |
| 8.98e-41 | FFCP PHASE2:Hg19::chr17:171082..171101,+#_94206c14c8fab051c78567f7d489dbb9 | p@chr17:171082..171101, + |
| 8.98e-41 | FFCP PHASE1:Hg19::chr17:171082..171101,+#_94206c14c8fab051c78567f7d489dbb9 | p@chr17:171082..171101, + |
| 1.1e-40 | FFCP PHASE1:Hg19::chr3:172384246..172384250,+#_c5d7991cc74560315eba6fab9eae2dfa | p@chr3:172384246..172384250, + |
| 1.1e-40 | FFCP PHASE2:Hg19::chr3:172384246..172384250,+#_c5d7991cc74560315eba6fab9eae2dfa | p@chr3:172384246..172384250, + |
| 1.64e-40 | FFCP PHASE1:Hg19::chr1:45087902..45087912,+#_c41be6302b0cf5fc428eb1c1331af1ab | p@chr1:45087902..45087912, + |
| 1.64e-40 | FFCP PHASE2:Hg19::chr1:45087902..45087912,+#_c41be6302b0cf5fc428eb1c1331af1ab | p@chr1:45087902..45087912, + |
| 3.68e-40 | FFCP PHASE2:Hg19::chr10:102505552..102505563,+#_e336df50f381732b2a727fb7978c0a8f | p5@PAX2 |
| 3.68e-40 | FFCP PHASE1:Hg19::chr10:102505552..102505563,+#_e336df50f381732b2a727fb7978c0a8f | p5@PAX2 |
| 8.2e-37 | FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_8b60c8f6c3b57dd8048339de0ec00c3e | p6@PAX2 |
| 8.2e-37 | FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_8b60c8f6c3b57dd8048339de0ec00c3e | p6@PAX2 |
| 9.84e-37 | FFCP PHASE2:Hg19::chr9:126131131..126131159,+#_fa15dd9faa4022b6b1aaafc6d9c3b723 | p3@CRB2 |
| 9.84e-37 | FFCP PHASE1:Hg19::chr9:126131131..126131159,+#_fa15dd9faa4022b6b1aaafc6d9c3b723 | p3@CRB2 |
| 6.0e-34 | FFCP PHASE2:Hg19::chr2:113984760..113984792,+#_4e63979ac94282e132cdc63490b71a51 | p@chr2:113984760..113984792, + |
| 6.0e-34 | FFCP PHASE1:Hg19::chr2:113984760..113984792,+#_4e63979ac94282e132cdc63490b71a51 | p@chr2:113984760..113984792, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr7:27164585..27164612,-#_712fca1e1d79ec94d09d22fb31661ca8 | p@chr7:27164585..27164612, - |
| 7.05e-34 | FFCP PHASE2:Hg19::chr11:555661..555679,+#_712fca1e1d79ec94d09d22fb31661ca8 | p@chr11:555661..555679, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr1:858638..858648,+#_712fca1e1d79ec94d09d22fb31661ca8 | p@chr1:858638..858648, + |
| 7.05e-34 | FFCP PHASE2:Hg19::chr7:27164585..27164612,-#_712fca1e1d79ec94d09d22fb31661ca8 | p@chr7:27164585..27164612, - |
| 7.05e-34 | FFCP PHASE1:Hg19::chr11:555661..555679,+#_712fca1e1d79ec94d09d22fb31661ca8 | p@chr11:555661..555679, + |
| 7.05e-34 | FFCP PHASE1:Hg19::chr1:858638..858648,+#_712fca1e1d79ec94d09d22fb31661ca8 | p@chr1:858638..858648, + |
| 8.39e-34 | FFCP PHASE1:Hg19::chr10:73848549..73848564,-#_9bdc87c21e44992f06167c90a24ad142 | p13@SPOCK2 |
| 8.39e-34 | FFCP PHASE2:Hg19::chr10:73848549..73848564,-#_9bdc87c21e44992f06167c90a24ad142 | p13@SPOCK2 |
| 1.17e-33 | FFCP PHASE2:Hg19::chr11:118477144..118477156,+#_736b82234e12f15f9d67f22d7cefaf83 | p25@PHLDB1 |
| 1.17e-33 | FFCP PHASE1:Hg19::chr11:118477144..118477156,+#_736b82234e12f15f9d67f22d7cefaf83 | p25@PHLDB1 |
| 3.35e-32 | FFCP PHASE1:Hg19::chr2:693362..693373,+#_a7fc25254aac2b1cf88bf13bd3e211d4 | p@chr2:693362..693373, + |
| 3.35e-32 | FFCP PHASE2:Hg19::chr2:693362..693373,+#_a7fc25254aac2b1cf88bf13bd3e211d4 | p@chr2:693362..693373, + |
| 2.54e-31 | FFCP PHASE1:Hg19::chrX:106146562..106146577,-#_8ed4c1b3bbabdf76397278a0481f3105 | p1@RIPPLY1 |
| 2.54e-31 | FFCP PHASE2:Hg19::chrX:106146562..106146577,-#_8ed4c1b3bbabdf76397278a0481f3105 | p1@RIPPLY1 |
| 8.05e-30 | FFCP PHASE1:Hg19::chr17:171147..171161,+#_e50bf7cb7858ef213cc4473533b98369 | p@chr17:171147..171161, + |
| 8.05e-30 | FFCP PHASE2:Hg19::chr17:171147..171161,+#_e50bf7cb7858ef213cc4473533b98369 | p@chr17:171147..171161, + |
| 2.96e-29 | FFCP PHASE2:Hg19::chr2:165477405..165477418,-#_a3094292e4734da11e292903b041ebfc | p@chr2:165477405..165477418, - |
| 2.96e-29 | FFCP PHASE1:Hg19::chr2:165477405..165477418,-#_a3094292e4734da11e292903b041ebfc | p@chr2:165477405..165477418, - |
| 4.55e-29 | FFCP PHASE1:Hg19::chr1:874109..874143,+#_8de8baf40785779460a2bbd731d48cd3 | p@chr1:874109..874143, + |
| 4.55e-29 | FFCP PHASE2:Hg19::chr1:874109..874143,+#_8de8baf40785779460a2bbd731d48cd3 | p@chr1:874109..874143, + |
| 1.43e-28 | FFCP PHASE1:Hg19::chr2:113999199..113999214,+#_f35e9e782b2c6beacd22554e0153f3fc | p@chr2:113999199..113999214, + |
| 1.43e-28 | FFCP PHASE2:Hg19::chr2:113999199..113999214,+#_f35e9e782b2c6beacd22554e0153f3fc | p@chr2:113999199..113999214, + |
| 1.83e-27 | FFCP PHASE1:Hg19::chr16:86604624..86604648,+#_2961c116c7eec98ee1e46fdd47fb6d6b | p@chr16:86604624..86604648, + |
| 1.83e-27 | FFCP PHASE1:Hg19::chr20:6034598..6034603,-#_2961c116c7eec98ee1e46fdd47fb6d6b | p7@LRRN4 |
| 1.83e-27 | FFCP PHASE2:Hg19::chr20:6034598..6034603,-#_2961c116c7eec98ee1e46fdd47fb6d6b | p7@LRRN4 |
| 1.83e-27 | FFCP PHASE2:Hg19::chr16:86604624..86604648,+#_2961c116c7eec98ee1e46fdd47fb6d6b | p@chr16:86604624..86604648, + |
| 2.74e-27 | FFCP PHASE2:Hg19::chr19:56091499..56091517,-#_382e5d09028222c9052ca88ec4432275 | p@chr19:56091499..56091517, - |
| 2.74e-27 | FFCP PHASE1:Hg19::chr19:56091499..56091517,-#_382e5d09028222c9052ca88ec4432275 | p@chr19:56091499..56091517, - |
| 2.78e-26 | FFCP PHASE2:Hg19::chr9:112260040..112260045,+#_ff723f90f0edeb8e86dd4e4ee7e88701 | p@chr9:112260040..112260045, + |
| 2.78e-26 | FFCP PHASE1:Hg19::chr9:112260040..112260045,+#_ff723f90f0edeb8e86dd4e4ee7e88701 | p@chr9:112260040..112260045, + |
| 4.63e-26 | FFCP PHASE1:Hg19::chr22:30645170..30645182,-#_8e995b997933c6134941ad96f52537c0 | p@chr22:30645170..30645182, - |
| 4.63e-26 | FFCP PHASE2:Hg19::chr22:30645170..30645182,-#_8e995b997933c6134941ad96f52537c0 | p@chr22:30645170..30645182, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:22419319..22419327,+#_e0b18b6197fd065cd4919f8b6677fab2 | p@chr8:22419319..22419327, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:22419319..22419327,+#_e0b18b6197fd065cd4919f8b6677fab2 | p@chr8:22419319..22419327, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr8:28196820..28196830,+#_c776d2977094599200d181515bc97b31 | p@chr8:28196820..28196830, + |
| 9.18e-26 | FFCP PHASE1:Hg19::chr2:176973165..176973169,-#_c776d2977094599200d181515bc97b31 | p@chr2:176973165..176973169, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr10:102505946..102505949,+#_c776d2977094599200d181515bc97b31 | p14@PAX2 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr20:6031540..6031548,-#_c776d2977094599200d181515bc97b31 | p@chr20:6031540..6031548, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr11:32457397..32457404,-#_c776d2977094599200d181515bc97b31 | p15@WT1 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr6:31833005..31833017,-#_c776d2977094599200d181515bc97b31 | p@chr6:31833005..31833017, - |
| 9.18e-26 | FFCP PHASE1:Hg19::chr17:15555143..15555150,-#_c776d2977094599200d181515bc97b31 | p12@TRIM16 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr8:28196820..28196830,+#_c776d2977094599200d181515bc97b31 | p@chr8:28196820..28196830, + |
| 9.18e-26 | FFCP PHASE2:Hg19::chr2:176973165..176973169,-#_c776d2977094599200d181515bc97b31 | p@chr2:176973165..176973169, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr20:6031540..6031548,-#_c776d2977094599200d181515bc97b31 | p@chr20:6031540..6031548, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr10:102505946..102505949,+#_c776d2977094599200d181515bc97b31 | p14@PAX2 |
| 9.18e-26 | FFCP PHASE1:Hg19::chr6:31833005..31833017,-#_c776d2977094599200d181515bc97b31 | p@chr6:31833005..31833017, - |
| 9.18e-26 | FFCP PHASE2:Hg19::chr11:32457397..32457404,-#_c776d2977094599200d181515bc97b31 | p15@WT1 |
| 9.18e-26 | FFCP PHASE2:Hg19::chr17:15555143..15555150,-#_c776d2977094599200d181515bc97b31 | p12@TRIM16 |
| 2.37e-25 | FFCP PHASE1:Hg19::chr7:27160553..27160560,+#_8ddd295c81cbd5147747ec1815c1a2f8 | p1@ENST00000523364, p1@uc010kux.1 |
| 2.37e-25 | FFCP PHASE2:Hg19::chr7:27160553..27160560,+#_8ddd295c81cbd5147747ec1815c1a2f8 | p1@ENST00000523364, p1@uc010kux.1 |
| 4.38e-25 | FFCP PHASE2:Hg19::chr7:27219754..27219759,-#_7a9e40698fd60567cf228123ffaae2b0 | p16@HOXA10 |
| 4.38e-25 | FFCP PHASE1:Hg19::chr7:27219754..27219759,-#_7a9e40698fd60567cf228123ffaae2b0 | p16@HOXA10 |
| 4.43e-25 | FFCP PHASE2:Hg19::chr1:149908263..149908281,-#_4156a653c907dd2df83e35ed01fbe6ae | p6@MTMR11 |
| 4.43e-25 | FFCP PHASE1:Hg19::chr1:149908263..149908281,-#_4156a653c907dd2df83e35ed01fbe6ae | p6@MTMR11 |
| 7.09e-25 | FFCP PHASE2:Hg19::chr10:102495147..102495159,+#_0326c07f9f57e3aeb43d559db60b1086 | p4@PAX2 |
| 7.09e-25 | FFCP PHASE1:Hg19::chr10:102495147..102495159,+#_0326c07f9f57e3aeb43d559db60b1086 | p4@PAX2 |
| 3.76e-24 | FFCP PHASE1:Hg19::chr1:46797583..46797614,-#_fdddfb34c7537254c89326b63f8792d9 | p@chr1:46797583..46797614, - |
| 3.76e-24 | FFCP PHASE2:Hg19::chr1:46797583..46797614,-#_fdddfb34c7537254c89326b63f8792d9 | p@chr1:46797583..46797614, - |
| 7.62e-24 | FFCP PHASE1:Hg19::chr6:94129519..94129544,+#_0746ea23ad1cfb3b28500b8d5b2f3fca | p@chr6:94129519..94129544, + |
| 7.62e-24 | FFCP PHASE2:Hg19::chr6:94129519..94129544,+#_0746ea23ad1cfb3b28500b8d5b2f3fca | p@chr6:94129519..94129544, + |
| 8.02e-24 | FFCP PHASE2:Hg19::chr2:693380..693398,+#_8e433479b841f85bdbf0a875719db79a | p@chr2:693380..693398, + |
| 8.02e-24 | FFCP PHASE1:Hg19::chr2:693380..693398,+#_8e433479b841f85bdbf0a875719db79a | p@chr2:693380..693398, + |
| 8.98e-24 | FFCP PHASE1:Hg19::chr2:133426077..133426103,-#_10060a8f9f4ab2b27d40e3bf79369757 | p@chr2:133426077..133426103, - |
| 8.98e-24 | FFCP PHASE2:Hg19::chr2:133426077..133426103,-#_10060a8f9f4ab2b27d40e3bf79369757 | p@chr2:133426077..133426103, - |
| 1.99e-23 | FFCP PHASE1:Hg19::chr11:32457350..32457361,+#_18d2812e68f562382660a0b02c3459ee | p5@WT1-AS |
| 1.99e-23 | FFCP PHASE2:Hg19::chr11:32457350..32457361,+#_18d2812e68f562382660a0b02c3459ee | p5@WT1-AS |
| 4.37e-23 | FFCP PHASE1:Hg19::chr2:176968471..176968476,-#_4440ad66eb1013f312de0e7581a82c8f | p@chr2:176968471..176968476, - |
| 4.37e-23 | FFCP PHASE2:Hg19::chr2:176968471..176968476,-#_4440ad66eb1013f312de0e7581a82c8f | p@chr2:176968471..176968476, - |
| 4.89e-23 | FFCP PHASE2:Hg19::chr12:15592437..15592438,+#_e4f2bbbb705862955dd697ddbdbf8c75 | p1@ENST00000469884 |
| 4.89e-23 | FFCP PHASE1:Hg19::chr12:15592437..15592438,+#_e4f2bbbb705862955dd697ddbdbf8c75 | p1@ENST00000469884 |
