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UBERON:0003891

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Name:stroma
Namespace:FANTOM
Definition:"connective, non-functional supportive framework of a biological cell, tissue, or organ. Contrast with parenchyma." [Wikipedia:Stroma_of_ovary_%28animal_tissue%29]
Xrefs:
links:

FMA:81494

ncithesaurus:Stroma_Connective_Tissue

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0000064(organ part)



Children

is a:UBERON:0001777 (substantia propria of cornea),UBERON:0002319 (mesangium),UBERON:0002321 (extraglomerular mesangium),UBERON:0005169 (interstitial tissue)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0003891 (stroma), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
3.1e-50FFCP PHASE2:Hg19::chr7:150910973..150910976,-#_ed91efed8cae188a2525747f14883032p@chr7:150910973..150910976, -
3.1e-50FFCP PHASE1:Hg19::chr7:150910973..150910976,-#_ed91efed8cae188a2525747f14883032p@chr7:150910973..150910976, -
3.1e-50FFCP PHASE1:Hg19::chr3:52362029..52362031,+#_ed91efed8cae188a2525747f14883032p@chr3:52362029..52362031, +
3.1e-50FFCP PHASE2:Hg19::chr3:52362029..52362031,+#_ed91efed8cae188a2525747f14883032p@chr3:52362029..52362031, +
2.22e-40FFCP PHASE1:Hg19::chr2:133426030..133426041,-#_003544a64a800699856f19b394e10821p@chr2:133426030..133426041, -
2.22e-40FFCP PHASE2:Hg19::chr2:133426030..133426041,-#_003544a64a800699856f19b394e10821p@chr2:133426030..133426041, -
2.71e-40FFCP PHASE1:Hg19::chr1:51791596..51791607,-#_c6a02a8fad1d5c73996bd5d071292764p23@TTC39A
2.71e-40FFCP PHASE2:Hg19::chr1:51791596..51791607,-#_c6a02a8fad1d5c73996bd5d071292764p23@TTC39A
7.07e-34FFCP PHASE2:Hg19::chr2:133426106..133426117,-#_5e1e0e397fd2fc23db418bba10a5ee1bp@chr2:133426106..133426117, -
7.07e-34FFCP PHASE1:Hg19::chr2:133426106..133426117,-#_5e1e0e397fd2fc23db418bba10a5ee1bp@chr2:133426106..133426117, -
2.63e-26FFCP PHASE1:Hg19::chr1:145589059..145589070,-#_fc3af989a49a4931857dd94cd94f9cdcp3@NUDT17
2.63e-26FFCP PHASE2:Hg19::chr1:145589059..145589070,-#_fc3af989a49a4931857dd94cd94f9cdcp3@NUDT17
6.73e-26FFCP PHASE1:Hg19::chr10:134535354..134535366,-#_9b630a56802e10912124b598a79a6b38p@chr10:134535354..134535366, -
6.73e-26FFCP PHASE2:Hg19::chr10:102495136..102495146,+#_9b630a56802e10912124b598a79a6b38p8@PAX2
6.73e-26FFCP PHASE2:Hg19::chr10:134535354..134535366,-#_9b630a56802e10912124b598a79a6b38p@chr10:134535354..134535366, -
6.73e-26FFCP PHASE1:Hg19::chr10:102495136..102495146,+#_9b630a56802e10912124b598a79a6b38p8@PAX2
7.14e-26FFCP PHASE1:Hg19::chr10:102505655..102505689,+#_481c0431e2cb86b0aa78c75a570d40cbp10@PAX2
7.14e-26FFCP PHASE2:Hg19::chr6:113369869..113369877,+#_481c0431e2cb86b0aa78c75a570d40cbp@chr6:113369869..113369877, +
7.14e-26FFCP PHASE1:Hg19::chr6:113369869..113369877,+#_481c0431e2cb86b0aa78c75a570d40cbp@chr6:113369869..113369877, +
7.14e-26FFCP PHASE1:Hg19::chr15:49255230..49255248,-#_481c0431e2cb86b0aa78c75a570d40cbp16@SHC4
7.14e-26FFCP PHASE2:Hg19::chr8:22932230..22932233,-#_481c0431e2cb86b0aa78c75a570d40cbp5@ENST00000520840, p5@ENST00000523806
7.14e-26FFCP PHASE1:Hg19::chr8:22932230..22932233,-#_481c0431e2cb86b0aa78c75a570d40cbp5@ENST00000520840, p5@ENST00000523806
7.14e-26FFCP PHASE2:Hg19::chr9:81641483..81641491,-#_481c0431e2cb86b0aa78c75a570d40cbp@chr9:81641483..81641491, -
7.14e-26FFCP PHASE1:Hg19::chr9:81641483..81641491,-#_481c0431e2cb86b0aa78c75a570d40cbp@chr9:81641483..81641491, -
7.14e-26FFCP PHASE2:Hg19::chr10:92617531..92617541,-#_481c0431e2cb86b0aa78c75a570d40cbp8@HTR7
7.14e-26FFCP PHASE2:Hg19::chr10:102505655..102505689,+#_481c0431e2cb86b0aa78c75a570d40cbp10@PAX2
7.14e-26FFCP PHASE2:Hg19::chr15:49255230..49255248,-#_481c0431e2cb86b0aa78c75a570d40cbp16@SHC4
7.14e-26FFCP PHASE1:Hg19::chr10:92617531..92617541,-#_481c0431e2cb86b0aa78c75a570d40cbp8@HTR7
9.82e-26FFCP PHASE1:Hg19::chr17:17480803..17480814,-#_9b0396dc1db922f06a85405b1ce35859p19@PEMT
9.82e-26FFCP PHASE2:Hg19::chr17:17480803..17480814,-#_9b0396dc1db922f06a85405b1ce35859p19@PEMT
7.18e-23FFCP PHASE2:Hg19::chr11:124629023..124629069,+#_a84b043358ce3fce5fcb9161e286a476p1@ENST00000504932
7.18e-23FFCP PHASE1:Hg19::chr11:124629023..124629069,+#_a84b043358ce3fce5fcb9161e286a476p1@ENST00000504932
5.72e-21FFCP PHASE1:Hg19::chr17:171082..171101,+#_049994bfbd18f0e0956d4fbd83260448p@chr17:171082..171101, +
5.72e-21FFCP PHASE2:Hg19::chr17:171082..171101,+#_049994bfbd18f0e0956d4fbd83260448p@chr17:171082..171101, +
6.33e-21FFCP PHASE2:Hg19::chr3:172384246..172384250,+#_8724491dc733c63a469ac495b490c359p@chr3:172384246..172384250, +
6.33e-21FFCP PHASE1:Hg19::chr3:172384246..172384250,+#_8724491dc733c63a469ac495b490c359p@chr3:172384246..172384250, +
7.74e-21FFCP PHASE2:Hg19::chr1:45087902..45087912,+#_71de51b5eb8c9f7718864013ded11c0fp@chr1:45087902..45087912, +
7.74e-21FFCP PHASE1:Hg19::chr1:45087902..45087912,+#_71de51b5eb8c9f7718864013ded11c0fp@chr1:45087902..45087912, +
1.15e-20FFCP PHASE2:Hg19::chr10:102505552..102505563,+#_099b9459c62b68873514047a6089dd1bp5@PAX2
1.15e-20FFCP PHASE1:Hg19::chr10:102505552..102505563,+#_099b9459c62b68873514047a6089dd1bp5@PAX2
1.56e-20FFCP PHASE1:Hg19::chr17:38498236..38498251,+#_a3f0792b76a8ec65de240203c1a2ea3bp24@RARA
1.56e-20FFCP PHASE2:Hg19::chr17:38498236..38498251,+#_a3f0792b76a8ec65de240203c1a2ea3bp24@RARA
5.64e-19FFCP PHASE2:Hg19::chr10:102505312..102505320,+#_db45090fc08cd70e2434889a4ae9cabfp6@PAX2
5.64e-19FFCP PHASE1:Hg19::chr10:102505312..102505320,+#_db45090fc08cd70e2434889a4ae9cabfp6@PAX2
5.84e-19FFCP PHASE2:Hg19::chr20:25176603..25176614,+#_ceeca1c6aa30470d023a6203a780a19fp@chr20:25176603..25176614, +
5.84e-19FFCP PHASE1:Hg19::chr20:25176603..25176614,+#_ceeca1c6aa30470d023a6203a780a19fp@chr20:25176603..25176614, +
6.18e-19FFCP PHASE2:Hg19::chr9:126131131..126131159,+#_b20dfeb9ceafa21666af1341a725e185p3@CRB2
6.18e-19FFCP PHASE1:Hg19::chr9:126131131..126131159,+#_b20dfeb9ceafa21666af1341a725e185p3@CRB2
6.18e-19FFCP PHASE2:Hg19::chr9:114808729..114808743,+#_b20dfeb9ceafa21666af1341a725e185p@chr9:114808729..114808743, +
6.18e-19FFCP PHASE1:Hg19::chr9:114808729..114808743,+#_b20dfeb9ceafa21666af1341a725e185p@chr9:114808729..114808743, +
3.48e-18FFCP PHASE2:Hg19::chr6:35464729..35464738,-#_acf5652c3b221e0ef70a8ae429b578ffp3@TEAD3
3.48e-18FFCP PHASE1:Hg19::chr6:35464729..35464738,-#_acf5652c3b221e0ef70a8ae429b578ffp3@TEAD3
7.62e-18FFCP PHASE2:Hg19::chr10:33624581..33624593,-#_3063d95ad89b866d8d7f2f795a54e5dap@chr10:33624581..33624593, -
7.62e-18FFCP PHASE1:Hg19::chr10:33624581..33624593,-#_3063d95ad89b866d8d7f2f795a54e5dap@chr10:33624581..33624593, -
8.69e-18FFCP PHASE2:Hg19::chr1:44820685..44820695,-#_6f0c1e9c17e33de8d2550561e970e938p10@ERI3
8.69e-18FFCP PHASE2:Hg19::chr21:47410794..47410799,+#_6f0c1e9c17e33de8d2550561e970e938p@chr21:47410794..47410799, +
8.69e-18FFCP PHASE2:Hg19::chr6:151770193..151770196,-#_6f0c1e9c17e33de8d2550561e970e938p@chr6:151770193..151770196, -
8.69e-18FFCP PHASE1:Hg19::chr1:44820685..44820695,-#_6f0c1e9c17e33de8d2550561e970e938p10@ERI3
8.69e-18FFCP PHASE1:Hg19::chr6:151770193..151770196,-#_6f0c1e9c17e33de8d2550561e970e938p@chr6:151770193..151770196, -
8.69e-18FFCP PHASE1:Hg19::chr21:47410794..47410799,+#_6f0c1e9c17e33de8d2550561e970e938p@chr21:47410794..47410799, +
1.03e-17FFCP PHASE1:Hg19::chr5:79375654..79375674,+#_c020f83ad058f2a4b6b48ef71f4693b8p@chr5:79375654..79375674, +
1.03e-17FFCP PHASE1:Hg19::chr11:65265332..65265342,+#_c020f83ad058f2a4b6b48ef71f4693b8p19@MALAT1
1.03e-17FFCP PHASE2:Hg19::chr7:27164585..27164612,-#_c020f83ad058f2a4b6b48ef71f4693b8p@chr7:27164585..27164612, -
1.03e-17FFCP PHASE2:Hg19::chr15:101459410..101459421,-#_c020f83ad058f2a4b6b48ef71f4693b8p2@ENST00000560068
1.03e-17FFCP PHASE1:Hg19::chr1:858638..858648,+#_c020f83ad058f2a4b6b48ef71f4693b8p@chr1:858638..858648, +
1.03e-17FFCP PHASE1:Hg19::chr2:25383828..25383855,-#_c020f83ad058f2a4b6b48ef71f4693b8p4@POMC
1.03e-17FFCP PHASE2:Hg19::chr10:74020629..74020634,-#_c020f83ad058f2a4b6b48ef71f4693b8p@chr10:74020629..74020634, -
1.03e-17FFCP PHASE1:Hg19::chr7:27164585..27164612,-#_c020f83ad058f2a4b6b48ef71f4693b8p@chr7:27164585..27164612, -
1.03e-17FFCP PHASE2:Hg19::chr11:555661..555679,+#_c020f83ad058f2a4b6b48ef71f4693b8p@chr11:555661..555679, +
1.03e-17FFCP PHASE1:Hg19::chr1:9970194..9970195,-#_c020f83ad058f2a4b6b48ef71f4693b8p14@CTNNBIP1
1.03e-17FFCP PHASE2:Hg19::chr10:43133595..43133606,-#_c020f83ad058f2a4b6b48ef71f4693b8p@chr10:43133595..43133606, -
1.03e-17FFCP PHASE1:Hg19::chr10:74020629..74020634,-#_c020f83ad058f2a4b6b48ef71f4693b8p@chr10:74020629..74020634, -
1.03e-17FFCP PHASE1:Hg19::chr11:555661..555679,+#_c020f83ad058f2a4b6b48ef71f4693b8p@chr11:555661..555679, +
1.03e-17FFCP PHASE2:Hg19::chr5:79375654..79375674,+#_c020f83ad058f2a4b6b48ef71f4693b8p@chr5:79375654..79375674, +
1.03e-17FFCP PHASE1:Hg19::chr15:101459410..101459421,-#_c020f83ad058f2a4b6b48ef71f4693b8p2@ENST00000560068
1.03e-17FFCP PHASE1:Hg19::chr10:43133595..43133606,-#_c020f83ad058f2a4b6b48ef71f4693b8p@chr10:43133595..43133606, -
1.03e-17FFCP PHASE2:Hg19::chr1:858638..858648,+#_c020f83ad058f2a4b6b48ef71f4693b8p@chr1:858638..858648, +
1.03e-17FFCP PHASE2:Hg19::chr2:25383828..25383855,-#_c020f83ad058f2a4b6b48ef71f4693b8p4@POMC
1.03e-17FFCP PHASE2:Hg19::chr1:9970194..9970195,-#_c020f83ad058f2a4b6b48ef71f4693b8p14@CTNNBIP1
1.03e-17FFCP PHASE2:Hg19::chr11:65265332..65265342,+#_c020f83ad058f2a4b6b48ef71f4693b8p19@MALAT1
1.57e-17FFCP PHASE2:Hg19::chr2:113984760..113984792,+#_7d129ad8535ee1af87df3a838fb5b15ap@chr2:113984760..113984792, +
1.57e-17FFCP PHASE1:Hg19::chr2:113984760..113984792,+#_7d129ad8535ee1af87df3a838fb5b15ap@chr2:113984760..113984792, +
1.86e-17FFCP PHASE1:Hg19::chr10:73848549..73848564,-#_819c5304a24d600b1ed05546f6460691p13@SPOCK2
1.86e-17FFCP PHASE2:Hg19::chr10:73848549..73848564,-#_819c5304a24d600b1ed05546f6460691p13@SPOCK2
2.19e-17FFCP PHASE2:Hg19::chr11:118477144..118477156,+#_6fbb88ce43e10ef0ba676a99754fd6bbp25@PHLDB1
2.19e-17FFCP PHASE1:Hg19::chr11:118477144..118477156,+#_6fbb88ce43e10ef0ba676a99754fd6bbp25@PHLDB1
1.21e-16FFCP PHASE2:Hg19::chr2:693362..693373,+#_94fc48997abda1b97bd6635e3e775208p@chr2:693362..693373, +
1.21e-16FFCP PHASE1:Hg19::chr2:693362..693373,+#_94fc48997abda1b97bd6635e3e775208p@chr2:693362..693373, +
3.32e-16FFCP PHASE2:Hg19::chr7:140227349..140227360,-#_fced78c7663172238db7194917c27c36p@chr7:140227349..140227360, -
3.32e-16FFCP PHASE1:Hg19::chr7:140227349..140227360,-#_fced78c7663172238db7194917c27c36p@chr7:140227349..140227360, -
3.32e-16FFCP PHASE2:Hg19::chrX:106146562..106146577,-#_fced78c7663172238db7194917c27c36p1@RIPPLY1
3.32e-16FFCP PHASE1:Hg19::chrX:106146562..106146577,-#_fced78c7663172238db7194917c27c36p1@RIPPLY1
5.26e-16FFCP PHASE1:Hg19::chr4:111536534..111536575,-#_2124076af279238b4b575c37400ecef9p1@ENST00000503456
5.26e-16FFCP PHASE2:Hg19::chr4:111536534..111536575,-#_2124076af279238b4b575c37400ecef9p1@ENST00000503456
6.61e-16FFCP PHASE1:Hg19::chr19:45261267..45261280,+#_73d1e661742defca2c5b950f4398433ep@chr19:45261267..45261280, +
6.61e-16FFCP PHASE2:Hg19::chr19:45261267..45261280,+#_73d1e661742defca2c5b950f4398433ep@chr19:45261267..45261280, +
1.92e-15FFCP PHASE1:Hg19::chr17:171147..171161,+#_cf8992eb43cc5b19bddd853293a09d7bp@chr17:171147..171161, +
1.92e-15FFCP PHASE2:Hg19::chr17:171147..171161,+#_cf8992eb43cc5b19bddd853293a09d7bp@chr17:171147..171161, +
3.67e-15FFCP PHASE2:Hg19::chr2:165477405..165477418,-#_28e67dc11b65686822a56c4f9a523d90p@chr2:165477405..165477418, -
3.67e-15FFCP PHASE1:Hg19::chr2:165477405..165477418,-#_28e67dc11b65686822a56c4f9a523d90p@chr2:165477405..165477418, -