Personal tools

UBERON:0002471: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
Line 6: Line 6:
|xref=EFO:0000878;;FMA:83016;;MA:0002716;;MAT:0000092;;MIAA:0000092
|xref=EFO:0000878;;FMA:83016;;MA:0002716;;MAT:0000092;;MIAA:0000092
|is_a=UBERON:0002529
|is_a=UBERON:0002529
|synonym="epipodium" EXACT [MA:th];;"middle free limb segment" EXACT [FMA:83016];;"middle limb segment" EXACT [];;"middle part of limb" BROAD [];;"zeugopodium" EXACT []
|synonym="epipodium" EXACT [MA:th];;"middle free limb segment" EXACT [FMA:83016];;"middle limb segment" EXACT [];;"middle part of limb" BROAD [];;"zeugopod limb segment" EXACT [MA:th];;"zeugopodial limb segment" EXACT [MA:th];;"zeugopodium" EXACT []
|comment=This class was created automatically from a combination of ontologies
|comment=Naming conventions for pod terms under discussion within phenoscape group
|alt_id=UBERON:MA_0002716-MIAA_0000092
|alt_id=UBERON:MA_0002716-MIAA_0000092
|disjoint_from=
|disjoint_from=
Line 14: Line 14:
|obo_creation_date=
|obo_creation_date=
|subset=uberon_slim
|subset=uberon_slim
|adjacent_to=
|derives_from=
|derives_from=
|develops_from=
|develops_from=

Revision as of 17:02, 26 June 2012

Name:zeugopod
Definition:"The middle part of the limb (e.g. between the elbow and wrist)" []
Xrefs:
links:

EFO:0000878
FMA:83016
MA:0002716
MAT:0000092

MIAA:0000092
Synonyms: "epipodium" EXACT [MA:th]
"middle free limb segment" EXACT [FMA:83016]
"middle limb segment" EXACT []
"middle part of limb" BROAD []
"zeugopod limb segment" EXACT [MA:th]
"zeugopodial limb segment" EXACT [MA:th]
"zeugopodium" EXACT []
Comments:Naming conventions for pod terms under discussion within phenoscape group
Alt_id: UBERON:MA_0002716-MIAA_0000092
Subset: uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0002529(limb segment)



Children

is a:UBERON:0003823 (hindlimb zeugopod)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002471 (zeugopod), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_127dfadf797bbe4171e8f373bacf6a38p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_127dfadf797bbe4171e8f373bacf6a38p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_127dfadf797bbe4171e8f373bacf6a38p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_127dfadf797bbe4171e8f373bacf6a38p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_127dfadf797bbe4171e8f373bacf6a38p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_127dfadf797bbe4171e8f373bacf6a38p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_127dfadf797bbe4171e8f373bacf6a38p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_127dfadf797bbe4171e8f373bacf6a38p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_127dfadf797bbe4171e8f373bacf6a38p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_127dfadf797bbe4171e8f373bacf6a38p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_127dfadf797bbe4171e8f373bacf6a38p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_127dfadf797bbe4171e8f373bacf6a38p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_127dfadf797bbe4171e8f373bacf6a38p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_127dfadf797bbe4171e8f373bacf6a38p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_127dfadf797bbe4171e8f373bacf6a38p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_127dfadf797bbe4171e8f373bacf6a38p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_127dfadf797bbe4171e8f373bacf6a38p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_127dfadf797bbe4171e8f373bacf6a38p@chr2:76859417..76859418, +
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_940704d2085d3257130f2b1f65572121p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_940704d2085d3257130f2b1f65572121p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_940704d2085d3257130f2b1f65572121p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_940704d2085d3257130f2b1f65572121p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_940704d2085d3257130f2b1f65572121p104@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_940704d2085d3257130f2b1f65572121p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_940704d2085d3257130f2b1f65572121p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_940704d2085d3257130f2b1f65572121p108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_940704d2085d3257130f2b1f65572121p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_940704d2085d3257130f2b1f65572121p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_940704d2085d3257130f2b1f65572121p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_940704d2085d3257130f2b1f65572121p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_940704d2085d3257130f2b1f65572121p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_940704d2085d3257130f2b1f65572121p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_940704d2085d3257130f2b1f65572121p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_940704d2085d3257130f2b1f65572121p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_940704d2085d3257130f2b1f65572121p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_940704d2085d3257130f2b1f65572121p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_940704d2085d3257130f2b1f65572121p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_940704d2085d3257130f2b1f65572121p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_940704d2085d3257130f2b1f65572121p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_940704d2085d3257130f2b1f65572121p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_940704d2085d3257130f2b1f65572121p93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_940704d2085d3257130f2b1f65572121p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_940704d2085d3257130f2b1f65572121p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_940704d2085d3257130f2b1f65572121p7@FLJ36848
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_940704d2085d3257130f2b1f65572121p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_940704d2085d3257130f2b1f65572121p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_940704d2085d3257130f2b1f65572121p77@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_940704d2085d3257130f2b1f65572121p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_940704d2085d3257130f2b1f65572121p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_940704d2085d3257130f2b1f65572121p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_940704d2085d3257130f2b1f65572121p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_940704d2085d3257130f2b1f65572121p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_940704d2085d3257130f2b1f65572121p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_940704d2085d3257130f2b1f65572121p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_940704d2085d3257130f2b1f65572121p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_940704d2085d3257130f2b1f65572121p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_940704d2085d3257130f2b1f65572121p7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_940704d2085d3257130f2b1f65572121p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_940704d2085d3257130f2b1f65572121p77@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_940704d2085d3257130f2b1f65572121p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_940704d2085d3257130f2b1f65572121p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_940704d2085d3257130f2b1f65572121p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_940704d2085d3257130f2b1f65572121p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_940704d2085d3257130f2b1f65572121p54@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_940704d2085d3257130f2b1f65572121p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_940704d2085d3257130f2b1f65572121p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_940704d2085d3257130f2b1f65572121p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_940704d2085d3257130f2b1f65572121p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_940704d2085d3257130f2b1f65572121p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_940704d2085d3257130f2b1f65572121p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_940704d2085d3257130f2b1f65572121p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_940704d2085d3257130f2b1f65572121p54@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_940704d2085d3257130f2b1f65572121p108@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_940704d2085d3257130f2b1f65572121p@chr5:137206180..137206187, +
2.55e-98FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_6866b746677bcd171b35d3ad6893813ep@chr6:125535391..125535409, +
2.55e-98FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_6866b746677bcd171b35d3ad6893813ep@chr5:95180155..95180172, +
2.55e-98FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_6866b746677bcd171b35d3ad6893813ep@chr12:102079632..102079647, -
2.55e-98FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_6866b746677bcd171b35d3ad6893813ep@chr18:8608021..8608050, +
2.55e-98FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_6866b746677bcd171b35d3ad6893813ep@chr12:69653866..69653876, +
2.55e-98FFCP PHASE2:Hg19::chr5:95180155..95180172,+#_6866b746677bcd171b35d3ad6893813ep@chr5:95180155..95180172, +
2.55e-98FFCP PHASE2:Hg19::chr18:8608021..8608050,+#_6866b746677bcd171b35d3ad6893813ep@chr18:8608021..8608050, +
2.55e-98FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_6866b746677bcd171b35d3ad6893813ep@chr2:152566311..152566321, -
2.55e-98FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_6866b746677bcd171b35d3ad6893813ep73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_6866b746677bcd171b35d3ad6893813ep@chr22:26299595..26299605, +
2.55e-98FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_6866b746677bcd171b35d3ad6893813ep@chr10:97037060..97037066, -
2.55e-98FFCP PHASE2:Hg19::chr12:122884464..122884467,-#_6866b746677bcd171b35d3ad6893813ep38@CLIP1
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_6866b746677bcd171b35d3ad6893813ep@chr2:179656442..179656451, -
2.55e-98FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_6866b746677bcd171b35d3ad6893813ep@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_6866b746677bcd171b35d3ad6893813ep@chr10:29918007..29918031, -
2.55e-98FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_6866b746677bcd171b35d3ad6893813ep73@XIRP2
2.55e-98FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_6866b746677bcd171b35d3ad6893813ep@chr22:26299595..26299605, +
2.55e-98FFCP PHASE2:Hg19::chr2:152566311..152566321,-#_6866b746677bcd171b35d3ad6893813ep@chr2:152566311..152566321, -
2.55e-98FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_6866b746677bcd171b35d3ad6893813ep@chr21:47769234..47769239, +
2.55e-98FFCP PHASE2:Hg19::chr10:29918007..29918031,-#_6866b746677bcd171b35d3ad6893813ep@chr10:29918007..29918031, -
2.55e-98FFCP PHASE2:Hg19::chr10:97037060..97037066,-#_6866b746677bcd171b35d3ad6893813ep@chr10:97037060..97037066, -
2.55e-98FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_6866b746677bcd171b35d3ad6893813ep@chr2:179656442..179656451, -
2.55e-98FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_6866b746677bcd171b35d3ad6893813ep@chr3:69168368..69168389, -
2.55e-98FFCP PHASE1:Hg19::chr3:35732964..35732965,+#_6866b746677bcd171b35d3ad6893813ep@chr3:35732964..35732965, +
2.55e-98FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_6866b746677bcd171b35d3ad6893813ep@chr2:152590465..152590472, -
2.55e-98FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_6866b746677bcd171b35d3ad6893813ep27@CLIP4

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=UBERON:0002471&oldid=1835779"