Personal tools

UBERON:0002529

From FANTOM5_SSTAR

Jump to: navigation, search

Name:limb segment
Namespace:FANTOM
Definition:"A major subdivision of a mature or developing limb, including both skeletal elements (or the mesenchyme that gives rise to the skeletal elements) and associated tissues, such as muscle, connective tissue, integument. Examples: autopod region, zeugopod region, stylopod region, metapodial region, arm region. Excludes the limb girdles." [UBERON:cjm]
Xrefs:
links:

FMA:241863

MA:0002889
Synonyms: "free limb segment" EXACT [FMA:241863]
"limb region" EXACT []
"region of limb" EXACT []
"segment of limb" EXACT []
"subdivision of limb" EXACT []
Comments:note FMA has both limb segment and free limb segment, the former includes the girdles. Note that MA uses the term more generally and includes A,S,Z,S+Z(arm/leg), whereas FMA is just A,S,Z
Alt_id: UBERON:MA_0002889-FMA_9661

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data


Parents

is_a:UBERON:0010538(paired limb/fin segment)
disjoint_from:UBERON:0010912(subdivision of skeleton)
part_of:UBERON:0002101(limb)



Children

is a:UBERON:0002470 (autopod region),UBERON:0002471 (zeugopod),UBERON:0002472 (stylopod),UBERON:0008784 (lower limb segment),UBERON:0008785 (upper limb segment),UBERON:0008837 (palmar/plantar part of autopod),UBERON:0009551 (distal segment of digit),UBERON:0012139 (segment of autopod)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology


Human (Homo sapiens)

... further results Mouse (Mus musculus)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002529 (limb segment), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data


P-valueFFCPShort description
5.42e-195FFCP PHASE1:Hg19::chr4:186423235..186423240,-#_4dcbc07311bb42ea90c52096ea0038c7p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE1:Hg19::chr2:179396370..179396375,-#_4dcbc07311bb42ea90c52096ea0038c7p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE1:Hg19::chr2:76859417..76859418,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE2:Hg19::chr4:85166508..85166512,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE1:Hg19::chr22:25535147..25535150,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr22:25535147..25535150, +
5.42e-195FFCP PHASE1:Hg19::chr7:128483294..128483304,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr10:97176812..97176813,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE1:Hg19::chr10:97176812..97176813,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr10:97176812..97176813, +
5.42e-195FFCP PHASE2:Hg19::chr11:3691037..3691040,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr11:3691037..3691040,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr11:3691037..3691040, +
5.42e-195FFCP PHASE1:Hg19::chr4:85166508..85166512,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr4:85166508..85166512, +
5.42e-195FFCP PHASE2:Hg19::chr4:186423235..186423240,-#_4dcbc07311bb42ea90c52096ea0038c7p@chr4:186423235..186423240, -
5.42e-195FFCP PHASE2:Hg19::chr10:79759687..79759690,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr2:76859417..76859418,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr2:76859417..76859418, +
5.42e-195FFCP PHASE1:Hg19::chr10:79759687..79759690,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr10:79759687..79759690, +
5.42e-195FFCP PHASE2:Hg19::chr2:179396370..179396375,-#_4dcbc07311bb42ea90c52096ea0038c7p@chr2:179396370..179396375, -
5.42e-195FFCP PHASE2:Hg19::chr7:128483294..128483304,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr7:128483294..128483304, +
5.42e-195FFCP PHASE2:Hg19::chr22:25535147..25535150,+#_4dcbc07311bb42ea90c52096ea0038c7p@chr22:25535147..25535150, +
9.37e-99FFCP PHASE1:Hg19::chr2:64069328..64069334,-#_455ae255a2d15b228d149a20ea6bf841p7@FLJ36848
9.37e-99FFCP PHASE1:Hg19::chr5:137206180..137206187,+#_455ae255a2d15b228d149a20ea6bf841p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE2:Hg19::chr5:175125123..175125125,+#_455ae255a2d15b228d149a20ea6bf841p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE1:Hg19::chr1:145478051..145478060,-#_455ae255a2d15b228d149a20ea6bf841p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr8:144542829..144542857,-#_455ae255a2d15b228d149a20ea6bf841p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE2:Hg19::chr2:179514306..179514308,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE1:Hg19::chr2:152534468..152534476,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr13:51335579..51335582,+#_455ae255a2d15b228d149a20ea6bf841p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE2:Hg19::chr2:168105362..168105368,+#_455ae255a2d15b228d149a20ea6bf841p46@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr6:33716557..33716600,-#_455ae255a2d15b228d149a20ea6bf841p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE2:Hg19::chr5:172318159..172318160,+#_455ae255a2d15b228d149a20ea6bf841p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE2:Hg19::chr7:66800928..66800936,+#_455ae255a2d15b228d149a20ea6bf841p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:168106638..168106641,+#_455ae255a2d15b228d149a20ea6bf841p93@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:179399371..179399376,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE2:Hg19::chr22:36000901..36000903,-#_455ae255a2d15b228d149a20ea6bf841p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr2:168102721..168102729,+#_455ae255a2d15b228d149a20ea6bf841p77@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:168105987..168105994,+#_455ae255a2d15b228d149a20ea6bf841p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152525581..152525588,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr5:117747577..117747580,+#_455ae255a2d15b228d149a20ea6bf841p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr2:168104676..168104679,+#_455ae255a2d15b228d149a20ea6bf841p104@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:168105362..168105368,+#_455ae255a2d15b228d149a20ea6bf841p46@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:179514306..179514308,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:179514306..179514308, -
9.37e-99FFCP PHASE1:Hg19::chr13:114067922..114067931,-#_455ae255a2d15b228d149a20ea6bf841p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr1:119487319..119487331,-#_455ae255a2d15b228d149a20ea6bf841p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE1:Hg19::chr3:188070178..188070183,+#_455ae255a2d15b228d149a20ea6bf841p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE1:Hg19::chr5:175125123..175125125,+#_455ae255a2d15b228d149a20ea6bf841p@chr5:175125123..175125125, +
9.37e-99FFCP PHASE2:Hg19::chr2:168104926..168104927,+#_455ae255a2d15b228d149a20ea6bf841p108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr15:51060095..51060101,+#_455ae255a2d15b228d149a20ea6bf841p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr6:33716557..33716600,-#_455ae255a2d15b228d149a20ea6bf841p@chr6:33716557..33716600, -
9.37e-99FFCP PHASE1:Hg19::chr2:168105987..168105994,+#_455ae255a2d15b228d149a20ea6bf841p54@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152553958..152553964,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE2:Hg19::chr2:152499727..152499734,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE1:Hg19::chr22:36000901..36000903,-#_455ae255a2d15b228d149a20ea6bf841p@chr22:36000901..36000903, -
9.37e-99FFCP PHASE1:Hg19::chr5:172318159..172318160,+#_455ae255a2d15b228d149a20ea6bf841p@chr5:172318159..172318160, +
9.37e-99FFCP PHASE1:Hg19::chr7:66800928..66800936,+#_455ae255a2d15b228d149a20ea6bf841p1@ENST00000430244, p1@uc003tvu.2
9.37e-99FFCP PHASE1:Hg19::chr2:152525581..152525588,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152525581..152525588, -
9.37e-99FFCP PHASE1:Hg19::chr2:168104676..168104679,+#_455ae255a2d15b228d149a20ea6bf841p104@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr2:152520248..152520253,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr8:144542829..144542857,-#_455ae255a2d15b228d149a20ea6bf841p@chr8:144542829..144542857, -
9.37e-99FFCP PHASE1:Hg19::chr1:119487319..119487331,-#_455ae255a2d15b228d149a20ea6bf841p@chr1:119487319..119487331, -
9.37e-99FFCP PHASE2:Hg19::chr13:114067922..114067931,-#_455ae255a2d15b228d149a20ea6bf841p@chr13:114067922..114067931, -
9.37e-99FFCP PHASE2:Hg19::chr2:64069328..64069334,-#_455ae255a2d15b228d149a20ea6bf841p7@FLJ36848
9.37e-99FFCP PHASE2:Hg19::chr5:137206180..137206187,+#_455ae255a2d15b228d149a20ea6bf841p@chr5:137206180..137206187, +
9.37e-99FFCP PHASE1:Hg19::chr2:168104926..168104927,+#_455ae255a2d15b228d149a20ea6bf841p108@XIRP2
9.37e-99FFCP PHASE1:Hg19::chr2:152553958..152553964,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152553958..152553964, -
9.37e-99FFCP PHASE1:Hg19::chr2:152499727..152499734,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152499727..152499734, -
9.37e-99FFCP PHASE2:Hg19::chr1:145478051..145478060,-#_455ae255a2d15b228d149a20ea6bf841p@chr1:145478051..145478060, -
9.37e-99FFCP PHASE1:Hg19::chr13:51335579..51335582,+#_455ae255a2d15b228d149a20ea6bf841p@chr13:51335579..51335582, +
9.37e-99FFCP PHASE2:Hg19::chr2:152534468..152534476,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152534468..152534476, -
9.37e-99FFCP PHASE2:Hg19::chr15:51060095..51060101,+#_455ae255a2d15b228d149a20ea6bf841p@chr15:51060095..51060101, +
9.37e-99FFCP PHASE1:Hg19::chr2:152520248..152520253,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:152520248..152520253, -
9.37e-99FFCP PHASE2:Hg19::chr2:168106638..168106641,+#_455ae255a2d15b228d149a20ea6bf841p93@XIRP2
9.37e-99FFCP PHASE2:Hg19::chr5:117747577..117747580,+#_455ae255a2d15b228d149a20ea6bf841p@chr5:117747577..117747580, +
9.37e-99FFCP PHASE2:Hg19::chr2:179399371..179399376,-#_455ae255a2d15b228d149a20ea6bf841p@chr2:179399371..179399376, -
9.37e-99FFCP PHASE2:Hg19::chr3:188070178..188070183,+#_455ae255a2d15b228d149a20ea6bf841p@chr3:188070178..188070183, +
9.37e-99FFCP PHASE2:Hg19::chr2:168102721..168102729,+#_455ae255a2d15b228d149a20ea6bf841p77@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr10:97037060..97037066,-#_b13d3f4edff2600f659c18a049495f41p@chr10:97037060..97037066, -
2.55e-98FFCP PHASE2:Hg19::chr12:102079632..102079647,-#_b13d3f4edff2600f659c18a049495f41p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE1:Hg19::chr2:179656442..179656451,-#_b13d3f4edff2600f659c18a049495f41p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE1:Hg19::chr2:168102459..168102468,+#_b13d3f4edff2600f659c18a049495f41p73@XIRP2
2.55e-98FFCP PHASE2:Hg19::chr2:152590465..152590472,-#_b13d3f4edff2600f659c18a049495f41p@chr2:152590465..152590472, -
2.55e-98FFCP PHASE1:Hg19::chr3:46924232..46924241,+#_b13d3f4edff2600f659c18a049495f41p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE1:Hg19::chr2:152566311..152566321,-#_b13d3f4edff2600f659c18a049495f41p@chr2:152566311..152566321, -
2.55e-98FFCP PHASE2:Hg19::chr22:26299595..26299605,+#_b13d3f4edff2600f659c18a049495f41p@chr22:26299595..26299605, +
2.55e-98FFCP PHASE1:Hg19::chr2:29398214..29398229,+#_b13d3f4edff2600f659c18a049495f41p27@CLIP4
2.55e-98FFCP PHASE1:Hg19::chr5:95180155..95180172,+#_b13d3f4edff2600f659c18a049495f41p@chr5:95180155..95180172, +
2.55e-98FFCP PHASE1:Hg19::chr10:29918007..29918031,-#_b13d3f4edff2600f659c18a049495f41p@chr10:29918007..29918031, -
2.55e-98FFCP PHASE1:Hg19::chr12:102079632..102079647,-#_b13d3f4edff2600f659c18a049495f41p@chr12:102079632..102079647, -
2.55e-98FFCP PHASE2:Hg19::chr21:47769234..47769239,+#_b13d3f4edff2600f659c18a049495f41p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr22:26299595..26299605,+#_b13d3f4edff2600f659c18a049495f41p@chr22:26299595..26299605, +
2.55e-98FFCP PHASE1:Hg19::chr2:152590465..152590472,-#_b13d3f4edff2600f659c18a049495f41p@chr2:152590465..152590472, -
2.55e-98FFCP PHASE2:Hg19::chr3:69168368..69168389,-#_b13d3f4edff2600f659c18a049495f41p@chr3:69168368..69168389, -
2.55e-98FFCP PHASE2:Hg19::chr6:125535391..125535409,+#_b13d3f4edff2600f659c18a049495f41p@chr6:125535391..125535409, +
2.55e-98FFCP PHASE2:Hg19::chr12:69653866..69653876,+#_b13d3f4edff2600f659c18a049495f41p@chr12:69653866..69653876, +
2.55e-98FFCP PHASE2:Hg19::chr3:35732964..35732965,+#_b13d3f4edff2600f659c18a049495f41p@chr3:35732964..35732965, +
2.55e-98FFCP PHASE1:Hg19::chr21:47769234..47769239,+#_b13d3f4edff2600f659c18a049495f41p@chr21:47769234..47769239, +
2.55e-98FFCP PHASE1:Hg19::chr18:8608021..8608050,+#_b13d3f4edff2600f659c18a049495f41p@chr18:8608021..8608050, +
2.55e-98FFCP PHASE2:Hg19::chr2:179656442..179656451,-#_b13d3f4edff2600f659c18a049495f41p@chr2:179656442..179656451, -
2.55e-98FFCP PHASE2:Hg19::chr2:29398214..29398229,+#_b13d3f4edff2600f659c18a049495f41p27@CLIP4
2.55e-98FFCP PHASE2:Hg19::chr3:46924232..46924241,+#_b13d3f4edff2600f659c18a049495f41p@chr3:46924232..46924241, +
2.55e-98FFCP PHASE2:Hg19::chr2:168102459..168102468,+#_b13d3f4edff2600f659c18a049495f41p73@XIRP2
2.55e-98FFCP PHASE1:Hg19::chr3:69168368..69168389,-#_b13d3f4edff2600f659c18a049495f41p@chr3:69168368..69168389, -