UBERON:0005426: Difference between revisions
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|name=lens vesicle | |name=lens vesicle | ||
|namespace= | |namespace= | ||
|def="Portion of tissue that gives rise to the lens." [ZFIN:curator] | |def="Portion of tissue that gives rise to the lens." [https://sourceforge.net/tracker/?func=detail&atid=994726&aid=3514998&group_id=76834, ZFIN:curator] | ||
|xref= | |xref=EHDAA2:0000983;;EHDAA:4737;;EMAPA:17163;;SCTID:361510002;;TAO:0002205;;VHOG:0001163;;ZFA:0001679;;ZFIN:ZDB-ANAT-090226-2 | ||
|is_a=UBERON:0000479;;UBERON:0004121 | |is_a=UBERON:0000479;;UBERON:0004121 | ||
|synonym= | |synonym="hollow lens vesicle" NARROW SENSU [];;"solid lens vesicle" NARROW SENSU [ZFA:0001679] | ||
|comment= | |comment=Development notes: the lens of zebrafish (and other teleosts) forms from delamination of cells from the lens placode; thus, there is no formation of a hollow lens vesicle, in contrast to the situation in mammals and birds (Glass and Dahm, 2004) [PMID:16496288] The lens of the zebrafish forms by delamination of lens placodal cells and not through invagination. This results in a solid spherical mass as opposed to a hollow lens vesicle. Detachment of the solid lens vesicle of zebrafish at 24b26 hpf is accomplished in part by apoptosis, similar to mammals[ZFA] | ||
|alt_id= | |alt_id= | ||
|disjoint_from= | |disjoint_from= | ||
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|obo_creation_date= | |obo_creation_date= | ||
|subset=vertebrate_core | |subset=vertebrate_core | ||
|derives_from= | |derives_from= | ||
|develops_from= | |develops_from= | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
Revision as of 17:06, 26 June 2012
| Name: | lens vesicle | ||
|---|---|---|---|
| Definition: | "Portion of tissue that gives rise to the lens." ZFIN:curator | ||
| Xrefs: |
| ||
| Synonyms: |
"hollow lens vesicle" NARROW SENSU [] "solid lens vesicle" NARROW SENSU [ZFA:0001679] | ||
| Comments: | Development notes: the lens of zebrafish (and other teleosts) forms from delamination of cells from the lens placode; thus, there is no formation of a hollow lens vesicle, in contrast to the situation in mammals and birds (Glass and Dahm, 2004) [PMID:16496288] The lens of the zebrafish forms by delamination of lens placodal cells and not through invagination. This results in a solid spherical mass as opposed to a hollow lens vesicle. Detachment of the solid lens vesicle of zebrafish at 24b26 hpf is accomplished in part by apoptosis, similar to mammals[ZFA] | ||
| Subset: | vertebrate_core |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0000479(tissue),UBERON:0004121(ectoderm-derived structure) |
|---|
Children
| develops from: | UBERON:0000965 (lens of camera-type eye) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0005426 (lens vesicle), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.41e-88 | FFCP PHASE1:Hg19::chr22:25595823..25595826,+#_9a1f49a9ba5170c6f5c3fe7553e681b0 | p1@CRYBB3 |
| 1.41e-88 | FFCP PHASE2:Hg19::chr22:25595823..25595826,+#_9a1f49a9ba5170c6f5c3fe7553e681b0 | p1@CRYBB3 |
| 3.32e-74 | FFCP PHASE2:Hg19::chr22:25615600..25615611,+#_ef95f245464de3d3006bb82bcf413c98 | p1@CRYBB2 |
| 3.32e-74 | FFCP PHASE1:Hg19::chr22:25615600..25615611,+#_ef95f245464de3d3006bb82bcf413c98 | p1@CRYBB2 |
| 5.48e-74 | FFCP PHASE2:Hg19::chr19:51891222..51891233,-#_288e6b96e734cec548834e2e6409fc1a | p1@LIM2 |
| 5.48e-74 | FFCP PHASE1:Hg19::chr19:51891222..51891233,-#_288e6b96e734cec548834e2e6409fc1a | p1@LIM2 |
| 3.8e-56 | FFCP PHASE1:Hg19::chr22:27017921..27017928,+#_ae6fdde5c3940669d781e7cdfc30f819 | p1@CRYBA4 |
| 3.8e-56 | FFCP PHASE2:Hg19::chr22:27017921..27017928,+#_ae6fdde5c3940669d781e7cdfc30f819 | p1@CRYBA4 |
| 3.1e-50 | FFCP PHASE2:Hg19::chr13:104778247..104778293,+#_dee81e90f40530db1ed9a0623fc6aab6 | p@chr13:104778247..104778293, + |
| 3.1e-50 | FFCP PHASE2:Hg19::chr20:61204240..61204241,+#_dee81e90f40530db1ed9a0623fc6aab6 | p@chr20:61204240..61204241, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr13:104778247..104778293,+#_dee81e90f40530db1ed9a0623fc6aab6 | p@chr13:104778247..104778293, + |
| 3.1e-50 | FFCP PHASE1:Hg19::chr20:61204240..61204241,+#_dee81e90f40530db1ed9a0623fc6aab6 | p@chr20:61204240..61204241, + |
| 5.14e-50 | FFCP PHASE1:Hg19::chr14:37642016..37642022,-#_65af1568ee62506984b5d73e871a874a | p7@SLC25A21 |
| 5.14e-50 | FFCP PHASE1:Hg19::chr21:44592820..44592840,-#_65af1568ee62506984b5d73e871a874a | p2@CU686889 |
| 5.14e-50 | FFCP PHASE2:Hg19::chr14:37642016..37642022,-#_65af1568ee62506984b5d73e871a874a | p7@SLC25A21 |
| 5.14e-50 | FFCP PHASE2:Hg19::chr21:44592820..44592840,-#_65af1568ee62506984b5d73e871a874a | p2@CU686889 |
| 6.6e-50 | FFCP PHASE2:Hg19::chr21:44592842..44592867,-#_b46a5896e0ed110a955a939cc7be1c62 | p1@CU686889 |
| 6.6e-50 | FFCP PHASE2:Hg19::chr12:132475501..132475504,+#_b46a5896e0ed110a955a939cc7be1c62 | p@chr12:132475501..132475504, + |
| 6.6e-50 | FFCP PHASE2:Hg19::chr21:44589339..44589372,-#_b46a5896e0ed110a955a939cc7be1c62 | p@chr21:44589339..44589372, - |
| 6.6e-50 | FFCP PHASE1:Hg19::chr21:44592842..44592867,-#_b46a5896e0ed110a955a939cc7be1c62 | p1@CU686889 |
| 6.6e-50 | FFCP PHASE1:Hg19::chr12:132475501..132475504,+#_b46a5896e0ed110a955a939cc7be1c62 | p@chr12:132475501..132475504, + |
| 6.6e-50 | FFCP PHASE1:Hg19::chr21:44589339..44589372,-#_b46a5896e0ed110a955a939cc7be1c62 | p@chr21:44589339..44589372, - |
| 6.27e-44 | FFCP PHASE2:Hg19::chr11:31827535..31827565,-#_c4ea1b4ef3326fb2ef8dff404a5f2562 | p11@PAX6 |
| 6.27e-44 | FFCP PHASE1:Hg19::chr11:31827535..31827565,-#_c4ea1b4ef3326fb2ef8dff404a5f2562 | p11@PAX6 |
| 1.92e-41 | FFCP PHASE1:Hg19::chr3:186262166..186262170,-#_b475215bfe18fa114d531afe7820c39f | p1@CRYGS |
| 1.92e-41 | FFCP PHASE2:Hg19::chr3:186262166..186262170,-#_b475215bfe18fa114d531afe7820c39f | p1@CRYGS |
| 4.94e-40 | FFCP PHASE1:Hg19::chr5:112173525..112173532,+#_458ce48b64dc278dc5d9c7039687f339 | p@chr5:112173525..112173532, + |
| 4.94e-40 | FFCP PHASE2:Hg19::chr5:112173525..112173532,+#_458ce48b64dc278dc5d9c7039687f339 | p@chr5:112173525..112173532, + |
| 1.62e-37 | FFCP PHASE1:Hg19::chr1:29586692..29586705,+#_6fd334359ce64fd3239ffd32fb52ec2e | p7@PTPRU |
| 1.62e-37 | FFCP PHASE2:Hg19::chr1:29586692..29586705,+#_6fd334359ce64fd3239ffd32fb52ec2e | p7@PTPRU |
| 2.1e-35 | FFCP PHASE1:Hg19::chr14:60975644..60975673,+#_8d2d9d0fff1e94f40b4f115b71af538d | p3@SIX6 |
| 2.1e-35 | FFCP PHASE2:Hg19::chr14:60975644..60975673,+#_8d2d9d0fff1e94f40b4f115b71af538d | p3@SIX6 |
| 6.73e-35 | FFCP PHASE2:Hg19::chr14:60975871..60975880,+#_5229ea95770d2ba7bafa739e29f783be | p4@SIX6 |
| 6.73e-35 | FFCP PHASE1:Hg19::chr14:60975871..60975880,+#_5229ea95770d2ba7bafa739e29f783be | p4@SIX6 |
| 5.06e-34 | FFCP PHASE1:Hg19::chr11:31667372..31667383,-#_c056f9e5eabc87024614814e5b107b2c | p@chr11:31667372..31667383, - |
| 5.06e-34 | FFCP PHASE2:Hg19::chr11:31667372..31667383,-#_c056f9e5eabc87024614814e5b107b2c | p@chr11:31667372..31667383, - |
| 8.36e-34 | FFCP PHASE1:Hg19::chr19:1470631..1470648,-#_db08d0d05268d043378a7fb4e8f49ff2 | p@chr19:1470631..1470648, - |
| 8.36e-34 | FFCP PHASE2:Hg19::chr19:1470631..1470648,-#_db08d0d05268d043378a7fb4e8f49ff2 | p@chr19:1470631..1470648, - |
| 5.55e-33 | FFCP PHASE2:Hg19::chr21:44589135..44589151,+#_6b068f9bb41501225c422f75cdac3980 | p1@CRYAA |
| 5.55e-33 | FFCP PHASE1:Hg19::chr21:44589135..44589151,+#_6b068f9bb41501225c422f75cdac3980 | p1@CRYAA |
| 9.55e-33 | FFCP PHASE2:Hg19::chr17:27573875..27573878,+#_1b071f8024fdc5bd8f8ed6a2fb3591bc | p1@CRYBA1 |
| 9.55e-33 | FFCP PHASE1:Hg19::chr17:27573875..27573878,+#_1b071f8024fdc5bd8f8ed6a2fb3591bc | p1@CRYBA1 |
| 2.74e-29 | FFCP PHASE2:Hg19::chr2:45168589..45168601,-#_a3db05f17656888530c071fce9cfa70d | p2@ENST00000456467 |
| 2.74e-29 | FFCP PHASE1:Hg19::chr2:45168589..45168601,-#_a3db05f17656888530c071fce9cfa70d | p2@ENST00000456467 |
| 3.65e-29 | FFCP PHASE2:Hg19::chr7:107883678..107883689,-#_ff1c9c97999dcfc827ce5aa14d4b9027 | p13@NRCAM |
| 3.65e-29 | FFCP PHASE1:Hg19::chr7:107883678..107883689,-#_ff1c9c97999dcfc827ce5aa14d4b9027 | p13@NRCAM |
| 7.46e-29 | FFCP PHASE1:Hg19::chr13:114202163..114202178,+#_21d133cb35ee34efde993c98d7aee3fa | p@chr13:114202163..114202178, + |
| 7.46e-29 | FFCP PHASE2:Hg19::chr13:114202163..114202178,+#_21d133cb35ee34efde993c98d7aee3fa | p@chr13:114202163..114202178, + |
| 1.36e-28 | FFCP PHASE2:Hg19::chr3:173116225..173116242,+#_50c83c05213f66ef129e47ec9de0ba97 | p10@NLGN1 |
| 1.36e-28 | FFCP PHASE1:Hg19::chr3:173116225..173116242,+#_50c83c05213f66ef129e47ec9de0ba97 | p10@NLGN1 |
| 2.64e-27 | FFCP PHASE1:Hg19::chr2:45169233..45169244,+#_96e7c13256e91368eb1e6dda81ece19e | p10@SIX3 |
| 2.64e-27 | FFCP PHASE2:Hg19::chr2:45169233..45169244,+#_96e7c13256e91368eb1e6dda81ece19e | p10@SIX3 |
| 8.39e-27 | FFCP PHASE2:Hg19::chr14:60975858..60975869,+#_df31c956872a434e82f1ab3ce0450414 | p2@SIX6 |
| 8.39e-27 | FFCP PHASE1:Hg19::chr14:60975858..60975869,+#_df31c956872a434e82f1ab3ce0450414 | p2@SIX6 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr3:150690809..150690822,-#_aace773b701378e4a9f2e983c30fa86b | p3@CLRN1 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr9:75848662..75848671,-#_aace773b701378e4a9f2e983c30fa86b | p@chr9:75848662..75848671, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chrX:43587410..43587413,+#_aace773b701378e4a9f2e983c30fa86b | p@chrX:43587410..43587413, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chr19:40920692..40920700,-#_aace773b701378e4a9f2e983c30fa86b | p@chr19:40920692..40920700, - |
| 5.56e-26 | FFCP PHASE2:Hg19::chr1:147374915..147374932,+#_aace773b701378e4a9f2e983c30fa86b | p1@GJA8 |
| 5.56e-26 | FFCP PHASE1:Hg19::chr3:150690809..150690822,-#_aace773b701378e4a9f2e983c30fa86b | p3@CLRN1 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr20:35861148..35861151,+#_aace773b701378e4a9f2e983c30fa86b | p@chr20:35861148..35861151, + |
| 5.56e-26 | FFCP PHASE1:Hg19::chrX:43587410..43587413,+#_aace773b701378e4a9f2e983c30fa86b | p@chrX:43587410..43587413, + |
| 5.56e-26 | FFCP PHASE2:Hg19::chr9:75848662..75848671,-#_aace773b701378e4a9f2e983c30fa86b | p@chr9:75848662..75848671, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr1:147374915..147374932,+#_aace773b701378e4a9f2e983c30fa86b | p1@GJA8 |
| 5.56e-26 | FFCP PHASE2:Hg19::chr19:40920692..40920700,-#_aace773b701378e4a9f2e983c30fa86b | p@chr19:40920692..40920700, - |
| 5.56e-26 | FFCP PHASE1:Hg19::chr20:35861148..35861151,+#_aace773b701378e4a9f2e983c30fa86b | p@chr20:35861148..35861151, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr5:464155..464205,+#_fbc5f34e34bd779997da02baaac84af4 | p@chr5:464155..464205, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr16:85617064..85617073,-#_fbc5f34e34bd779997da02baaac84af4 | p@chr16:85617064..85617073, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592358..44592365,+#_fbc5f34e34bd779997da02baaac84af4 | p@chr21:44592358..44592365, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592512..44592521,+#_fbc5f34e34bd779997da02baaac84af4 | p@chr21:44592512..44592521, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr20:33903184..33903189,-#_fbc5f34e34bd779997da02baaac84af4 | p11@UQCC |
| 7.14e-26 | FFCP PHASE1:Hg19::chr5:124468141..124468176,-#_fbc5f34e34bd779997da02baaac84af4 | p@chr5:124468141..124468176, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr12:56848437..56848442,-#_fbc5f34e34bd779997da02baaac84af4 | p1@MIP |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:36253916..36253918,-#_fbc5f34e34bd779997da02baaac84af4 | p@chr21:36253916..36253918, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr10:73406056..73406065,+#_fbc5f34e34bd779997da02baaac84af4 | p@chr10:73406056..73406065, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr8:94870047..94870056,+#_fbc5f34e34bd779997da02baaac84af4 | p30@PDP1 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr13:44875179..44875188,-#_fbc5f34e34bd779997da02baaac84af4 | p@chr13:44875179..44875188, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr1:115873480..115873484,+#_fbc5f34e34bd779997da02baaac84af4 | p@chr1:115873480..115873484, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592788..44592807,+#_fbc5f34e34bd779997da02baaac84af4 | p@chr21:44592788..44592807, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr11:65361417..65361421,-#_fbc5f34e34bd779997da02baaac84af4 | p2@KCNK7 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr2:10538258..10538282,+#_fbc5f34e34bd779997da02baaac84af4 | p@chr2:10538258..10538282, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr1:86064794..86064797,+#_fbc5f34e34bd779997da02baaac84af4 | p1@ENST00000426794 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr3:156322310..156322314,-#_fbc5f34e34bd779997da02baaac84af4 | p@chr3:156322310..156322314, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr5:45038620..45038622,+#_fbc5f34e34bd779997da02baaac84af4 | p@chr5:45038620..45038622, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr19:41727698..41727705,+#_fbc5f34e34bd779997da02baaac84af4 | p@chr19:41727698..41727705, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr7:123198284..123198329,-#_fbc5f34e34bd779997da02baaac84af4 | p3@NDUFA5 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592626..44592635,-#_fbc5f34e34bd779997da02baaac84af4 | p5@CU686889 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr16:17563573..17563582,+#_fbc5f34e34bd779997da02baaac84af4 | p@chr16:17563573..17563582, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr2:693025..693036,+#_fbc5f34e34bd779997da02baaac84af4 | p@chr2:693025..693036, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr16:17563573..17563582,+#_fbc5f34e34bd779997da02baaac84af4 | p@chr16:17563573..17563582, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr12:56848437..56848442,-#_fbc5f34e34bd779997da02baaac84af4 | p1@MIP |
| 7.14e-26 | FFCP PHASE1:Hg19::chr8:94870047..94870056,+#_fbc5f34e34bd779997da02baaac84af4 | p30@PDP1 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr13:44875179..44875188,-#_fbc5f34e34bd779997da02baaac84af4 | p@chr13:44875179..44875188, - |
| 7.14e-26 | FFCP PHASE2:Hg19::chr19:17137781..17137792,-#_fbc5f34e34bd779997da02baaac84af4 | p6@CPAMD8 |
| 7.14e-26 | FFCP PHASE2:Hg19::chr9:100057272..100057276,+#_fbc5f34e34bd779997da02baaac84af4 | p@chr9:100057272..100057276, + |
| 7.14e-26 | FFCP PHASE1:Hg19::chr5:464155..464205,+#_fbc5f34e34bd779997da02baaac84af4 | p@chr5:464155..464205, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr4:140656282..140656285,-#_fbc5f34e34bd779997da02baaac84af4 | p@chr4:140656282..140656285, - |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:44592512..44592521,+#_fbc5f34e34bd779997da02baaac84af4 | p@chr21:44592512..44592521, + |
| 7.14e-26 | FFCP PHASE2:Hg19::chr21:44592750..44592758,-#_fbc5f34e34bd779997da02baaac84af4 | p4@CU686889 |
| 7.14e-26 | FFCP PHASE1:Hg19::chr21:36253916..36253918,-#_fbc5f34e34bd779997da02baaac84af4 | p@chr21:36253916..36253918, - |
