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|subset=organ_slim;;uberon_slim
|subset=organ_slim;;uberon_slim
|derives_from=
|derives_from=
|develops_from=
|develops_from=UBERON:0004912
|has_quality=
|has_quality=
|located_in=
|located_in=
|part_of=
|part_of=UBERON:0002294
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Hollow tree organ, the organ parts of which consist of the bile ducts.[AAO]" xsd:string
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl;;UBPROP:0000001 "Hollow tree organ, the organ parts of which consist of the bile ducts.[AAO]" xsd:string
|is_obsolete=
|is_obsolete=
|preceded_by=
|preceded_by=
}}
}}

Revision as of 13:28, 27 June 2012

Name:biliary tree
Definition:"Hollow tree organ, the organ parts of which consists of the bile ducts[FMA]." [FMA:14665, Wikipedia:Biliary_tract]
Xrefs:
links:

AAO:0011020
FMA:14665
GAID:279
MA:0001273
MESH:A.03.159
ncithesaurus:Biliary_Tract
SCTID:181267003

XAO:0000455
Synonyms: "biliary tract" EXACT []
Alt_id: UBERON:FMA_14665-XAO_0000455
Subset: organ_slim
uberon_slim

Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data

Parents

is_a:UBERON:0000062(organ),UBERON:0004119(endoderm-derived structure)
develops_from:UBERON:0004912(biliary bud)
part_of:UBERON:0002294(biliary system)



Children

part of:UBERON:0001174 (common bile duct),UBERON:0002110 (gallbladder),UBERON:0002394 (bile duct),UBERON:0005171 (hepatic duct)

Ontology Tree: Loaded from BioPortal

Ontorolgy tree(Small window open)

FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology

Human (Homo sapiens)

... further results


Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0001173 (biliary tree), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data

P-valueFFCPShort description
3.07e-86FFCP PHASE2:Mm9::chr6:129180613..129180616,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr6:129180613..129180616, +
3.07e-86FFCP PHASE2:Mm9::chr1:163794592..163794593,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr1:163794592..163794593, +
3.07e-86FFCP PHASE1:Mm9::chr17:35093616..35093631,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:35093616..35093631, -
3.07e-86FFCP PHASE2:Mm9::chr12:86691503..86691504,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr12:86691503..86691504, -
3.07e-86FFCP PHASE1:Mm9::chr5:124112234..124112240,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr5:124112234..124112240, +
3.07e-86FFCP PHASE2:Mm9::chr6:92938260..92938264,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr6:92938260..92938264, -
3.07e-86FFCP PHASE2:Mm9::chr18:39297570..39297573,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr18:39297570..39297573, -
3.07e-86FFCP PHASE1:Mm9::chr11:107196799..107196814,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:107196799..107196814, +
3.07e-86FFCP PHASE2:Mm9::chr5:76329688..76329692,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr5:76329688..76329692, -
3.07e-86FFCP PHASE2:Mm9::chr7:117101788..117101793,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr7:117101788..117101793, +
3.07e-86FFCP PHASE1:Mm9::chr7:87919399..87919406,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr7:87919399..87919406, +
3.07e-86FFCP PHASE1:Mm9::chr10:60279719..60279737,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr10:60279719..60279737, -
3.07e-86FFCP PHASE1:Mm9::chr15:82207617..82207621,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr15:82207617..82207621, +
3.07e-86FFCP PHASE1:Mm9::chr18:39513150..39513152,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr18:39513150..39513152, +
3.07e-86FFCP PHASE2:Mm9::chr18:65159026..65159034,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr18:65159026..65159034, -
3.07e-86FFCP PHASE1:Mm9::chr11:54785454..54785456,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:54785454..54785456, -
3.07e-86FFCP PHASE1:Mm9::chr13:113550715..113550722,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr13:113550715..113550722, -
3.07e-86FFCP PHASE2:Mm9::chr17:34798597..34798606,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:34798597..34798606, +
3.07e-86FFCP PHASE2:Mm9::chr5:75375903..75375931,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr5:75375903..75375931, +
3.07e-86FFCP PHASE1:Mm9::chr4:137487112..137487117,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr4:137487112..137487117, +
3.07e-86FFCP PHASE2:Mm9::chr10:93499468..93499494,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr10:93499468..93499494, -
3.07e-86FFCP PHASE1:Mm9::chr3:90270007..90270012,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr3:90270007..90270012, +
3.07e-86FFCP PHASE1:Mm9::chr13:96429602..96429605,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr13:96429602..96429605, -
3.07e-86FFCP PHASE2:Mm9::chr1:173044327..173044331,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr1:173044327..173044331, +
3.07e-86FFCP PHASE2:Mm9::chr7:109031260..109031268,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr7:109031260..109031268, +
3.07e-86FFCP PHASE2:Mm9::chr10:8586393..8586401,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr10:8586393..8586401, +
3.07e-86FFCP PHASE2:Mm9::chr17:35945332..35945335,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:35945332..35945335, +
3.07e-86FFCP PHASE2:Mm9::chr13:113053257..113053258,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr13:113053257..113053258, +
3.07e-86FFCP PHASE1:Mm9::chr3:104857794..104857802,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr3:104857794..104857802, -
3.07e-86FFCP PHASE2:Mm9::chr18:60398371..60398393,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr18:60398371..60398393, -
3.07e-86FFCP PHASE1:Mm9::chr16:85547242..85547252,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr16:85547242..85547252, +
3.07e-86FFCP PHASE1:Mm9::chr15:59435855..59435878,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr15:59435855..59435878, -
3.07e-86FFCP PHASE2:Mm9::chr5:124112234..124112240,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr5:124112234..124112240, +
3.07e-86FFCP PHASE1:Mm9::chr18:47491114..47491123,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr18:47491114..47491123, +
3.07e-86FFCP PHASE2:Mm9::chr8:127816016..127816021,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr8:127816016..127816021, +
3.07e-86FFCP PHASE1:Mm9::chr10:93499468..93499494,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr10:93499468..93499494, -
3.07e-86FFCP PHASE2:Mm9::chr17:67870501..67870507,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:67870501..67870507, +
3.07e-86FFCP PHASE2:Mm9::chr9:42915185..42915192,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr9:42915185..42915192, -
3.07e-86FFCP PHASE1:Mm9::chr2:129407463..129407468,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr2:129407463..129407468, -
3.07e-86FFCP PHASE2:Mm9::chr1:137570295..137570315,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr1:137570295..137570315, +
3.07e-86FFCP PHASE2:Mm9::chr5:33088768..33088773,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr5:33088768..33088773, +
3.07e-86FFCP PHASE2:Mm9::chr17:35094068..35094092,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:35094068..35094092, -
3.07e-86FFCP PHASE2:Mm9::chr14:101778294..101778296,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr14:101778294..101778296, +
3.07e-86FFCP PHASE2:Mm9::chr9:62199266..62199267,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr9:62199266..62199267, +
3.07e-86FFCP PHASE1:Mm9::chr11:48685851..48685860,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:48685851..48685860, -
3.07e-86FFCP PHASE2:Mm9::chr10:85586219..85586227,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr10:85586219..85586227, +
3.07e-86FFCP PHASE2:Mm9::chr3:9705000..9705004,-#_5703c93ecdfe5914d53ea23a4cc8b84cp4@Pag1
3.07e-86FFCP PHASE1:Mm9::chr17:34796428..34796430,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:34796428..34796430, -
3.07e-86FFCP PHASE2:Mm9::chr13:113550715..113550722,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr13:113550715..113550722, -
3.07e-86FFCP PHASE2:Mm9::chr11:117829935..117829959,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:117829935..117829959, -
3.07e-86FFCP PHASE2:Mm9::chr12:87046930..87046933,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr12:87046930..87046933, +
3.07e-86FFCP PHASE2:Mm9::chr10:93942324..93942342,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr10:93942324..93942342, -
3.07e-86FFCP PHASE1:Mm9::chr12:88237840..88237851,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr12:88237840..88237851, -
3.07e-86FFCP PHASE2:Mm9::chr11:119254092..119254100,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:119254092..119254100, -
3.07e-86FFCP PHASE1:Mm9::chr10:85585991..85586025,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr10:85585991..85586025, -
3.07e-86FFCP PHASE1:Mm9::chr5:64344878..64344887,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr5:64344878..64344887, -
3.07e-86FFCP PHASE2:Mm9::chr4:100890388..100890423,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr4:100890388..100890423, +
3.07e-86FFCP PHASE1:Mm9::chr17:48822294..48822295,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:48822294..48822295, -
3.07e-86FFCP PHASE2:Mm9::chr1:138241693..138241697,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr1:138241693..138241697, +
3.07e-86FFCP PHASE2:Mm9::chr4:62009160..62009164,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr4:62009160..62009164, -
3.07e-86FFCP PHASE2:Mm9::chr10:21389022..21389032,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr10:21389022..21389032, +
3.07e-86FFCP PHASE1:Mm9::chr4:62009160..62009164,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr4:62009160..62009164, -
3.07e-86FFCP PHASE1:Mm9::chr6:51831254..51831256,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr6:51831254..51831256, -
3.07e-86FFCP PHASE1:Mm9::chr8:3311867..3311873,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr8:3311867..3311873, +
3.07e-86FFCP PHASE1:Mm9::chr13:113053257..113053258,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr13:113053257..113053258, +
3.07e-86FFCP PHASE1:Mm9::chr10:94580525..94580530,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr10:94580525..94580530, +
3.07e-86FFCP PHASE1:Mm9::chr16:30944451..30944485,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr16:30944451..30944485, +
3.07e-86FFCP PHASE1:Mm9::chr8:87745380..87745385,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr8:87745380..87745385, +
3.07e-86FFCP PHASE1:Mm9::chr11:115280630..115280662,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:115280630..115280662, +
3.07e-86FFCP PHASE2:Mm9::chr17:35106749..35106752,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:35106749..35106752, -
3.07e-86FFCP PHASE2:Mm9::chr2:169549462..169549477,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr2:169549462..169549477, +
3.07e-86FFCP PHASE1:Mm9::chr12:86691575..86691580,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr12:86691575..86691580, -
3.07e-86FFCP PHASE1:Mm9::chr17:28107053..28107062,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:28107053..28107062, -
3.07e-86FFCP PHASE2:Mm9::chr6:15678147..15678149,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr6:15678147..15678149, -
3.07e-86FFCP PHASE2:Mm9::chr11:109223756..109223764,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:109223756..109223764, -
3.07e-86FFCP PHASE1:Mm9::chr18:4336287..4336296,-#_5703c93ecdfe5914d53ea23a4cc8b84cp8@Map3k8
3.07e-86FFCP PHASE1:Mm9::chr13:100000226..100000230,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr13:100000226..100000230, +
3.07e-86FFCP PHASE1:Mm9::chr10:8586393..8586401,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr10:8586393..8586401, +
3.07e-86FFCP PHASE2:Mm9::chr4:141645056..141645068,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr4:141645056..141645068, +
3.07e-86FFCP PHASE2:Mm9::chr9:116223548..116223551,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr9:116223548..116223551, +
3.07e-86FFCP PHASE1:Mm9::chr17:35093764..35093773,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:35093764..35093773, -
3.07e-86FFCP PHASE2:Mm9::chr12:86691530..86691535,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr12:86691530..86691535, -
3.07e-86FFCP PHASE1:Mm9::chr8:86713876..86713879,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr8:86713876..86713879, +
3.07e-86FFCP PHASE2:Mm9::chr17:35093377..35093381,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr17:35093377..35093381, +
3.07e-86FFCP PHASE2:Mm9::chr2:129407463..129407468,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr2:129407463..129407468, -
3.07e-86FFCP PHASE1:Mm9::chr12:8400090..8400093,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr12:8400090..8400093, +
3.07e-86FFCP PHASE1:Mm9::chrX:166418658..166418683,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chrX:166418658..166418683, +
3.07e-86FFCP PHASE1:Mm9::chr15:82209805..82209851,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr15:82209805..82209851, +
3.07e-86FFCP PHASE1:Mm9::chr11:88890706..88890745,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr11:88890706..88890745, +
3.07e-86FFCP PHASE1:Mm9::chr3:9705000..9705004,-#_5703c93ecdfe5914d53ea23a4cc8b84cp4@Pag1
3.07e-86FFCP PHASE1:Mm9::chr5:75375903..75375931,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr5:75375903..75375931, +
3.07e-86FFCP PHASE1:Mm9::chr16:11009028..11009039,+#_5703c93ecdfe5914d53ea23a4cc8b84cp4@Gm4262
3.07e-86FFCP PHASE2:Mm9::chr3:90270007..90270012,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr3:90270007..90270012, +
3.07e-86FFCP PHASE1:Mm9::chr18:35900327..35900366,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr18:35900327..35900366, +
3.07e-86FFCP PHASE2:Mm9::chr16:85547242..85547252,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr16:85547242..85547252, +
3.07e-86FFCP PHASE1:Mm9::chr7:52781901..52781904,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr7:52781901..52781904, +
3.07e-86FFCP PHASE1:Mm9::chr16:85801525..85801529,-#_5703c93ecdfe5914d53ea23a4cc8b84cp6@Adamts1
3.07e-86FFCP PHASE1:Mm9::chr8:114123814..114123821,-#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr8:114123814..114123821, -
3.07e-86FFCP PHASE1:Mm9::chr1:137570295..137570315,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr1:137570295..137570315, +
3.07e-86FFCP PHASE1:Mm9::chr18:5125608..5125613,+#_5703c93ecdfe5914d53ea23a4cc8b84cp@chr18:5125608..5125613, +










Property "Property value" (as page type) with input value "UBPROP:0000001 "Hollow tree organ, the organ parts of which consist of the bile ducts.[AAO]" xsd:string" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.

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