UBERON:0002116: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
| Line 18: | Line 18: | ||
|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0002108 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/cl-to-uberon.owl;;IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:30, 27 June 2012
| Name: | ileum | ||
|---|---|---|---|
| Definition: | "The ileum is the final section of the small intestine in most higher vertebrates, including mammals, reptiles, and birds. In fish, the divisions of the small intestine are not as clear and the terms posterior intestine or distal intestine may be used instead of ileum. [WP,unvetted]." [Wikipedia:Ileum] | ||
| Xrefs: |
| ||
| Synonyms: |
"distal intestine" RELATED [BTO:0000620] "intestinum ileum" RELATED [BTO:0000620] "lower intestine" RELATED [BTO:0000620] | ||
| Comments: | TODO consider ZFA:0000706 posterior intestine, see also colon | ||
| Alt_id: | UBERON:FMA_7208-MA_0000339-MIAA_0000282-XAO_0000237 | ||
| Subset: | uberon_slim |
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0004921(subdivision of digestive tract) |
|---|---|
| part_of: | UBERON:0002108(small intestine) |
Children
| is a: | FF:0011477 (Ileum epithelium 1h after RANKL) |
|---|---|
| part of: | UBERON:0000331 (ileal mucosa),UBERON:0008344 (intestinal villus of ileum),UBERON:0008345 (ileal epithelium) |
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Mouse (Mus musculus)
- 10252-104B9 (Ileum epithelium, pool1)
- 10253-104C1 (Ileum epithelium, pool2)
- 10254-104C2
- 10255-104C3
- 10256-104C4
- 10257-104C5
- 10258-104C6
- 10259-104C7
- 10260-104C8 (Ileum epithelium, treated with RANKL, day03, pool3)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0002116 (ileum), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 1.58e-86 | FFCP PHASE1:Mm9::chr16:32477713..32477720,-#_5a0f4a9747fb0c12e65989bb5cc9bb8e | p@chr16:32477713..32477720, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr11:43412172..43412177,-#_5a0f4a9747fb0c12e65989bb5cc9bb8e | p@chr11:43412172..43412177, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr16:32477713..32477720,-#_5a0f4a9747fb0c12e65989bb5cc9bb8e | p@chr16:32477713..32477720, - |
| 1.58e-86 | FFCP PHASE2:Mm9::chr4:5463968..5463972,+#_5a0f4a9747fb0c12e65989bb5cc9bb8e | p@chr4:5463968..5463972, + |
| 1.58e-86 | FFCP PHASE1:Mm9::chr11:43412172..43412177,-#_5a0f4a9747fb0c12e65989bb5cc9bb8e | p@chr11:43412172..43412177, - |
| 1.58e-86 | FFCP PHASE1:Mm9::chr4:5463968..5463972,+#_5a0f4a9747fb0c12e65989bb5cc9bb8e | p@chr4:5463968..5463972, + |
| 1.33e-65 | FFCP PHASE1:Mm9::chr11:43412139..43412149,-#_98d9737ac0a174376f6f39068ea8745f | p@chr11:43412139..43412149, - |
| 1.33e-65 | FFCP PHASE2:Mm9::chr11:43412139..43412149,-#_98d9737ac0a174376f6f39068ea8745f | p@chr11:43412139..43412149, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr5:31350252..31350259,-#_dfedb25fec899aa967180d6ed14f9b15 | p13@Slc5a6 |
| 3.28e-58 | FFCP PHASE2:Mm9::chr11:43412215..43412219,-#_dfedb25fec899aa967180d6ed14f9b15 | p@chr11:43412215..43412219, - |
| 3.28e-58 | FFCP PHASE1:Mm9::chr3:80191466..80191470,+#_dfedb25fec899aa967180d6ed14f9b15 | p@chr3:80191466..80191470, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr10:127165632..127165636,+#_dfedb25fec899aa967180d6ed14f9b15 | p@chr10:127165632..127165636, + |
| 3.28e-58 | FFCP PHASE2:Mm9::chr15:70621810..70621814,-#_dfedb25fec899aa967180d6ed14f9b15 | p@chr15:70621810..70621814, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr10:127165632..127165636,+#_dfedb25fec899aa967180d6ed14f9b15 | p@chr10:127165632..127165636, + |
| 3.28e-58 | FFCP PHASE1:Mm9::chr15:70621810..70621814,-#_dfedb25fec899aa967180d6ed14f9b15 | p@chr15:70621810..70621814, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr5:31350252..31350259,-#_dfedb25fec899aa967180d6ed14f9b15 | p13@Slc5a6 |
| 3.28e-58 | FFCP PHASE1:Mm9::chr11:43412215..43412219,-#_dfedb25fec899aa967180d6ed14f9b15 | p@chr11:43412215..43412219, - |
| 3.28e-58 | FFCP PHASE2:Mm9::chr3:80191466..80191470,+#_dfedb25fec899aa967180d6ed14f9b15 | p@chr3:80191466..80191470, + |
| 4.9e-53 | FFCP PHASE2:Mm9::chr1:174032230..174032242,+#_5bd96d06e5ea2826f8cc49d6d6648edd | p@chr1:174032230..174032242, + |
| 4.9e-53 | FFCP PHASE1:Mm9::chr1:174032230..174032242,+#_5bd96d06e5ea2826f8cc49d6d6648edd | p@chr1:174032230..174032242, + |
| 1.1e-52 | FFCP PHASE2:Mm9::chr1:123242799..123242804,-#_bf1c0c25a52f668ed9d1f83351f6626b | p@chr1:123242799..123242804, - |
| 1.1e-52 | FFCP PHASE1:Mm9::chr1:123242799..123242804,-#_bf1c0c25a52f668ed9d1f83351f6626b | p@chr1:123242799..123242804, - |
| 5.51e-52 | FFCP PHASE2:Mm9::chr6:48417827..48417837,+#_b0438bcf9d7a1c226c22a41e2771b35e | p@chr6:48417827..48417837, + |
| 5.51e-52 | FFCP PHASE1:Mm9::chr9:7692339..7692366,+#_b0438bcf9d7a1c226c22a41e2771b35e | p@chr9:7692339..7692366, + |
| 5.51e-52 | FFCP PHASE2:Mm9::chr9:7692339..7692366,+#_b0438bcf9d7a1c226c22a41e2771b35e | p@chr9:7692339..7692366, + |
| 5.51e-52 | FFCP PHASE1:Mm9::chr6:48417827..48417837,+#_b0438bcf9d7a1c226c22a41e2771b35e | p@chr6:48417827..48417837, + |
| 1.18e-44 | FFCP PHASE2:Mm9::chr1:174032263..174032278,+#_2ddd66ee92e2546f113aae61df0bb165 | p@chr1:174032263..174032278, + |
| 1.18e-44 | FFCP PHASE1:Mm9::chr1:174032263..174032278,+#_2ddd66ee92e2546f113aae61df0bb165 | p@chr1:174032263..174032278, + |
| 1.66e-44 | FFCP PHASE2:Mm9::chr11:76730372..76730376,+#_a7f94ca04c828922d16a8d6f6da09bd8 | p@chr11:76730372..76730376, + |
| 1.66e-44 | FFCP PHASE1:Mm9::chr11:76730372..76730376,+#_a7f94ca04c828922d16a8d6f6da09bd8 | p@chr11:76730372..76730376, + |
| 2.33e-44 | FFCP PHASE2:Mm9::chr19:6114448..6114456,+#_44ce8df18b43d708ce7a239881a1ee75 | p@chr19:6114448..6114456, + |
| 2.33e-44 | FFCP PHASE1:Mm9::chr19:6114448..6114456,+#_44ce8df18b43d708ce7a239881a1ee75 | p@chr19:6114448..6114456, + |
| 2.33e-44 | FFCP PHASE2:Mm9::chr3:65610528..65610533,+#_44ce8df18b43d708ce7a239881a1ee75 | p@chr3:65610528..65610533, + |
| 2.33e-44 | FFCP PHASE1:Mm9::chr3:65610528..65610533,+#_44ce8df18b43d708ce7a239881a1ee75 | p@chr3:65610528..65610533, + |
| 1.7e-39 | FFCP PHASE1:Mm9::chr3:6169801..6169806,-#_1f3d10bf549d929618e30c343afe27f4 | p@chr3:6169801..6169806, - |
| 1.7e-39 | FFCP PHASE2:Mm9::chr3:6169801..6169806,-#_1f3d10bf549d929618e30c343afe27f4 | p@chr3:6169801..6169806, - |
| 2.66e-39 | FFCP PHASE2:Mm9::chr19:6112940..6112946,+#_e14da1d5ebf1eb90483a4cb20e78d859 | p@chr19:6112940..6112946, + |
| 2.66e-39 | FFCP PHASE1:Mm9::chr19:6112940..6112946,+#_e14da1d5ebf1eb90483a4cb20e78d859 | p@chr19:6112940..6112946, + |
| 4.15e-39 | FFCP PHASE1:Mm9::chr5:31350231..31350240,-#_d8043e6ce254faa2af75fe4a578ad89a | p12@Slc5a6 |
| 4.15e-39 | FFCP PHASE2:Mm9::chr5:31350231..31350240,-#_d8043e6ce254faa2af75fe4a578ad89a | p12@Slc5a6 |
| 1.17e-38 | FFCP PHASE1:Mm9::chr11:43412071..43412093,+#_ad1166dc699b68b25b3f154c837b5fe0 | p@chr11:43412071..43412093, + |
| 1.17e-38 | FFCP PHASE2:Mm9::chr11:43412071..43412093,+#_ad1166dc699b68b25b3f154c837b5fe0 | p@chr11:43412071..43412093, + |
| 1.56e-38 | FFCP PHASE1:Mm9::chr3:103636485..103636490,+#_ddf57869b767ce53a7c441efdcddaa82 | p3@Bcl2l15 |
| 1.56e-38 | FFCP PHASE2:Mm9::chr3:103636485..103636490,+#_ddf57869b767ce53a7c441efdcddaa82 | p3@Bcl2l15 |
| 3.67e-34 | FFCP PHASE1:Mm9::chr11:43412170..43412191,+#_611e4aac91d1d6dea6dd642edad9a529 | p@chr11:43412170..43412191, + |
| 3.67e-34 | FFCP PHASE2:Mm9::chr11:43412170..43412191,+#_611e4aac91d1d6dea6dd642edad9a529 | p@chr11:43412170..43412191, + |
| 4.74e-34 | FFCP PHASE2:Mm9::chr11:43409580..43409591,+#_8dea566a5a3b1435dd7735cce67a3a03 | p@chr11:43409580..43409591, + |
| 4.74e-34 | FFCP PHASE1:Mm9::chr11:43409580..43409591,+#_8dea566a5a3b1435dd7735cce67a3a03 | p@chr11:43409580..43409591, + |
| 6.12e-34 | FFCP PHASE1:Mm9::chr6:40578587..40578594,+#_a454ed91c9b51df407caf096cd8209dc | p4@Mgam |
| 6.12e-34 | FFCP PHASE2:Mm9::chr6:40578587..40578594,+#_a454ed91c9b51df407caf096cd8209dc | p4@Mgam |
| 1.02e-33 | FFCP PHASE1:Mm9::chr2:72453221..72453226,-#_dfe493a876355439fe5c81496b6853a8 | p@chr2:72453221..72453226, - |
| 1.02e-33 | FFCP PHASE2:Mm9::chr2:72453221..72453226,-#_dfe493a876355439fe5c81496b6853a8 | p@chr2:72453221..72453226, - |
| 1.31e-33 | FFCP PHASE2:Mm9::chr6:78323455..78323458,-#_c5235eba810482d5eba030018d5b575d | p@chr6:78323455..78323458, - |
| 1.31e-33 | FFCP PHASE1:Mm9::chr6:78323455..78323458,-#_c5235eba810482d5eba030018d5b575d | p@chr6:78323455..78323458, - |
| 1.31e-33 | FFCP PHASE2:Mm9::chr19:6112924..6112937,+#_c5235eba810482d5eba030018d5b575d | p@chr19:6112924..6112937, + |
| 1.31e-33 | FFCP PHASE1:Mm9::chr19:6112924..6112937,+#_c5235eba810482d5eba030018d5b575d | p@chr19:6112924..6112937, + |
| 2.89e-30 | FFCP PHASE1:Mm9::chr4:138388796..138388811,+#_5f55ab265f2604c5c091aa5a34b80adc | p3@ENSMUST00000147728 |
| 2.89e-30 | FFCP PHASE2:Mm9::chr4:138388796..138388811,+#_5f55ab265f2604c5c091aa5a34b80adc | p3@ENSMUST00000147728 |
| 4.03e-30 | FFCP PHASE1:Mm9::chr10:128109355..128109365,-#_c2a76abdfb0e9e27cc10ca5df19ccb94 | p@chr10:128109355..128109365, - |
| 4.03e-30 | FFCP PHASE2:Mm9::chr10:128109355..128109365,-#_c2a76abdfb0e9e27cc10ca5df19ccb94 | p@chr10:128109355..128109365, - |
| 4.03e-30 | FFCP PHASE2:Mm9::chr17:34484746..34484750,+#_c2a76abdfb0e9e27cc10ca5df19ccb94 | p@chr17:34484746..34484750, + |
| 4.03e-30 | FFCP PHASE1:Mm9::chr17:34484746..34484750,+#_c2a76abdfb0e9e27cc10ca5df19ccb94 | p@chr17:34484746..34484750, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr10:31111154..31111155,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr10:31111154..31111155, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr11:106410939..106410940,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr11:106410939..106410940, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr11:106410939..106410940,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr11:106410939..106410940, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr10:31111154..31111155,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr10:31111154..31111155, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr3:20879214..20879216,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr3:20879214..20879216, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr13:55874724..55874725,-#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr13:55874724..55874725, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr13:55874724..55874725,-#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr13:55874724..55874725, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr8:5085607..5085611,-#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr8:5085607..5085611, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr9:50047835..50047836,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr9:50047835..50047836, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr18:58306021..58306022,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr18:58306021..58306022, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr11:27472982..27472983,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr11:27472982..27472983, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr11:9039303..9039304,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr11:9039303..9039304, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr8:27020687..27020691,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr8:27020687..27020691, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr11:27472982..27472983,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr11:27472982..27472983, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr8:5085607..5085611,-#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr8:5085607..5085611, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr17:4030939..4030944,-#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr17:4030939..4030944, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr18:55496010..55496011,-#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr18:55496010..55496011, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr13:17402712..17402716,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr13:17402712..17402716, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr12:103615373..103615374,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr12:103615373..103615374, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chrX:83991903..83991905,-#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chrX:83991903..83991905, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr11:9039303..9039304,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr11:9039303..9039304, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr13:17402712..17402716,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr13:17402712..17402716, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr8:27020687..27020691,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr8:27020687..27020691, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr17:4030939..4030944,-#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr17:4030939..4030944, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr18:58306021..58306022,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr18:58306021..58306022, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chrX:68120720..68120723,-#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chrX:68120720..68120723, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr4:72564746..72564750,-#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr4:72564746..72564750, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr12:103615373..103615374,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr12:103615373..103615374, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr3:20879214..20879216,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr3:20879214..20879216, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chrX:68120720..68120723,-#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chrX:68120720..68120723, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr18:55496010..55496011,-#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr18:55496010..55496011, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr4:72564746..72564750,-#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr4:72564746..72564750, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr17:43614030..43614038,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr17:43614030..43614038, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chr1:40187318..40187321,-#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr1:40187318..40187321, - |
| 5.61e-30 | FFCP PHASE1:Mm9::chr9:50047835..50047836,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr9:50047835..50047836, + |
| 5.61e-30 | FFCP PHASE1:Mm9::chrX:83991903..83991905,-#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chrX:83991903..83991905, - |
| 5.61e-30 | FFCP PHASE2:Mm9::chr17:43614030..43614038,+#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr17:43614030..43614038, + |
| 5.61e-30 | FFCP PHASE2:Mm9::chr1:40187318..40187321,-#_dadee0484d1f49e32cd9cef3b37d0d85 | p@chr1:40187318..40187321, - |
