UBERON:0010225: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{UBERON
|id=UBERON:0010225
|name=thalamic complex
|namespace=
|def=
|xref=EHDAA2:0004469;;FMA:258745
|is_a=UBERON:0002784
|synonym=
|comment=
|alt_id=
|disjoint_fro...") |
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|has_quality= | |has_quality= | ||
|located_in= | |located_in= | ||
|part_of= | |part_of=UBERON:0001894 | ||
|property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | |property_value=IAO:0000412 http://purl.obolibrary.org/obo/uberon.owl | ||
|is_obsolete= | |is_obsolete= | ||
|preceded_by= | |preceded_by= | ||
}} | }} | ||
Revision as of 13:45, 27 June 2012
Ontology association<br>Each term has an is_a parent in the Uberon Ontology, which has a linkage to an another entity and FANTOM5 samples.Libraries were grouped into mutually exclusive facets according to the FANTOM5 sample ontology mapping to UBERON ontologies.<br><br>link to ontology dataset<br>data
Parents
| is_a: | UBERON:0002784(regional part of diencephalon) |
|---|---|
| part_of: | UBERON:0001894(diencephalon) |
Children
| part of: | UBERON:0001897 (dorsal plus ventral thalamus) |
|---|
Ontology Tree: Loaded from BioPortal
Ontorolgy tree(Small window open)
FF samples<br>It includes FANTOM5 samples that overlay the Uberon ontology
Human (Homo sapiens)
- 10154-103A1 (thalamus, adult, donor10252)
- 10168-103B6 (thalamus - adult, donor10196)
- 10366-105F6 (thalamus, newborn, donor10223)
- 10370-105G1 (thalamus, adult, donor10258)
Enrichment analysis: top 100 FFCP enriched with this ontology term TOP 100 FANTOM5 Cage Peaks enriched with UBERON:0010225 (thalamic complex), sorted by p-values <br>Analyst: Hideya Kawaji<br><br>link to source dataset <br>human : data <br>mouse : data
| P-value | FFCP | Short description |
|---|---|---|
| 4.61e-131 | FFCP PHASE2:Hg19::chr2:198530770..198530773,-#_cf55b3240da37e2f896cffc42f01aaaf | p@chr2:198530770..198530773, - |
| 4.61e-131 | FFCP PHASE1:Hg19::chr2:198530770..198530773,-#_cf55b3240da37e2f896cffc42f01aaaf | p@chr2:198530770..198530773, - |
| 1.55e-98 | FFCP PHASE2:Hg19::chrX:140890284..140890288,+#_4878ced70dd470115f7e85997496be19 | p@chrX:140890284..140890288, + |
| 1.55e-98 | FFCP PHASE1:Hg19::chrX:140890284..140890288,+#_4878ced70dd470115f7e85997496be19 | p@chrX:140890284..140890288, + |
| 1.05e-79 | FFCP PHASE2:Hg19::chr9:108129231..108129235,+#_f49c8f3a899f6eac2a2450ea857d4a0b | p@chr9:108129231..108129235, + |
| 1.05e-79 | FFCP PHASE1:Hg19::chr9:108129231..108129235,+#_f49c8f3a899f6eac2a2450ea857d4a0b | p@chr9:108129231..108129235, + |
| 1.45e-66 | FFCP PHASE1:Hg19::chr10:681520..681525,-#_ae4a4435db5cdc39487b5645377e5892 | p@chr10:681520..681525, - |
| 1.45e-66 | FFCP PHASE2:Hg19::chr10:681520..681525,-#_ae4a4435db5cdc39487b5645377e5892 | p@chr10:681520..681525, - |
| 5.53e-66 | FFCP PHASE2:Hg19::chr2:201599836..201599844,-#_0162eae9f8f4762c588d17402f53c7ed | p3@LOC100507140 |
| 5.53e-66 | FFCP PHASE1:Hg19::chr2:201599836..201599844,-#_0162eae9f8f4762c588d17402f53c7ed | p3@LOC100507140 |
| 1.13e-57 | FFCP PHASE1:Hg19::chr17:70890496..70890500,-#_d59fe0f51088d2fb115ad006c7c15af8 | p@chr17:70890496..70890500, - |
| 1.13e-57 | FFCP PHASE2:Hg19::chr17:70890496..70890500,-#_d59fe0f51088d2fb115ad006c7c15af8 | p@chr17:70890496..70890500, - |
| 1.51e-57 | FFCP PHASE1:Hg19::chr17:36605118..36605121,+#_d525d980dc96b2d969002cddb17c5ed1 | p@chr17:36605118..36605121, + |
| 1.51e-57 | FFCP PHASE2:Hg19::chr17:36605118..36605121,+#_d525d980dc96b2d969002cddb17c5ed1 | p@chr17:36605118..36605121, + |
| 4.77e-57 | FFCP PHASE2:Hg19::chr6:97520453..97520454,+#_10147ab63129111ad6dcadcf3f5918ca | p@chr6:97520453..97520454, + |
| 4.77e-57 | FFCP PHASE1:Hg19::chr6:97520453..97520454,+#_10147ab63129111ad6dcadcf3f5918ca | p@chr6:97520453..97520454, + |
| 6.36e-57 | FFCP PHASE1:Hg19::chr3:133487652..133487656,+#_2565dbb1f1b42d1553c6e2def465df3a | p@chr3:133487652..133487656, + |
| 6.36e-57 | FFCP PHASE1:Hg19::chr21:41300975..41300984,+#_2565dbb1f1b42d1553c6e2def465df3a | p@chr21:41300975..41300984, + |
| 6.36e-57 | FFCP PHASE2:Hg19::chr3:133487652..133487656,+#_2565dbb1f1b42d1553c6e2def465df3a | p@chr3:133487652..133487656, + |
| 6.36e-57 | FFCP PHASE2:Hg19::chr21:41300975..41300984,+#_2565dbb1f1b42d1553c6e2def465df3a | p@chr21:41300975..41300984, + |
| 8.82e-51 | FFCP PHASE1:Hg19::chr1:201476057..201476070,+#_58813cc0f5b2824a88e646989f6550d9 | p4@ENST00000454651 |
| 8.82e-51 | FFCP PHASE2:Hg19::chr17:73865552..73865562,+#_58813cc0f5b2824a88e646989f6550d9 | p@chr17:73865552..73865562, + |
| 8.82e-51 | FFCP PHASE1:Hg19::chr17:73865552..73865562,+#_58813cc0f5b2824a88e646989f6550d9 | p@chr17:73865552..73865562, + |
| 8.82e-51 | FFCP PHASE2:Hg19::chr1:201476057..201476070,+#_58813cc0f5b2824a88e646989f6550d9 | p4@ENST00000454651 |
| 1.88e-50 | FFCP PHASE1:Hg19::chr8:23127683..23127694,+#_311afefdf0a7a9ac8b3b50d142ed6eea | p8@R3HCC1 |
| 1.88e-50 | FFCP PHASE1:Hg19::chr6:134605007..134605011,-#_311afefdf0a7a9ac8b3b50d142ed6eea | p@chr6:134605007..134605011, - |
| 1.88e-50 | FFCP PHASE2:Hg19::chr8:23127683..23127694,+#_311afefdf0a7a9ac8b3b50d142ed6eea | p8@R3HCC1 |
| 1.88e-50 | FFCP PHASE2:Hg19::chr6:134605007..134605011,-#_311afefdf0a7a9ac8b3b50d142ed6eea | p@chr6:134605007..134605011, - |
| 2.74e-50 | FFCP PHASE2:Hg19::chr19:35788742..35788752,+#_0c2bf389eef0e993e21211e13fc48fa6 | p@chr19:35788742..35788752, + |
| 2.74e-50 | FFCP PHASE2:Hg19::chr10:114886533..114886542,+#_0c2bf389eef0e993e21211e13fc48fa6 | p48@TCF7L2 |
| 2.74e-50 | FFCP PHASE1:Hg19::chr19:35788742..35788752,+#_0c2bf389eef0e993e21211e13fc48fa6 | p@chr19:35788742..35788752, + |
| 2.74e-50 | FFCP PHASE1:Hg19::chr10:114886533..114886542,+#_0c2bf389eef0e993e21211e13fc48fa6 | p48@TCF7L2 |
| 4.0e-50 | FFCP PHASE1:Hg19::chr14:36367182..36367189,+#_a6cd8fda9867fc5ca3169ca277ddade2 | p5@ENST00000550089 |
| 4.0e-50 | FFCP PHASE2:Hg19::chr14:36367182..36367189,+#_a6cd8fda9867fc5ca3169ca277ddade2 | p5@ENST00000550089 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr3:155011771..155011808,-#_39ac3892d27b860d709f46f8ca562cea | p1@ENST00000489090 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr7:107883711..107883718,-#_39ac3892d27b860d709f46f8ca562cea | p29@NRCAM |
| 4.52e-50 | FFCP PHASE1:Hg19::chr6:143858194..143858197,+#_39ac3892d27b860d709f46f8ca562cea | p@chr6:143858194..143858197, + |
| 4.52e-50 | FFCP PHASE2:Hg19::chr3:155011771..155011808,-#_39ac3892d27b860d709f46f8ca562cea | p1@ENST00000489090 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr11:123502025..123502039,-#_39ac3892d27b860d709f46f8ca562cea | p22@SCN3B |
| 4.52e-50 | FFCP PHASE2:Hg19::chrX:134232704..134232705,-#_39ac3892d27b860d709f46f8ca562cea | p4@LINC00087 |
| 4.52e-50 | FFCP PHASE2:Hg19::chr6:143858194..143858197,+#_39ac3892d27b860d709f46f8ca562cea | p@chr6:143858194..143858197, + |
| 4.52e-50 | FFCP PHASE1:Hg19::chrX:134232704..134232705,-#_39ac3892d27b860d709f46f8ca562cea | p4@LINC00087 |
| 4.52e-50 | FFCP PHASE1:Hg19::chr4:56229918..56229919,-#_39ac3892d27b860d709f46f8ca562cea | p@chr4:56229918..56229919, - |
| 4.52e-50 | FFCP PHASE2:Hg19::chrX:1481635..1481645,-#_39ac3892d27b860d709f46f8ca562cea | p@chrX:1481635..1481645, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chrX:1481635..1481645,-#_39ac3892d27b860d709f46f8ca562cea | p@chrX:1481635..1481645, - |
| 4.52e-50 | FFCP PHASE1:Hg19::chr11:123502025..123502039,-#_39ac3892d27b860d709f46f8ca562cea | p22@SCN3B |
| 4.52e-50 | FFCP PHASE1:Hg19::chr7:107883711..107883718,-#_39ac3892d27b860d709f46f8ca562cea | p29@NRCAM |
| 4.52e-50 | FFCP PHASE2:Hg19::chr4:56229918..56229919,-#_39ac3892d27b860d709f46f8ca562cea | p@chr4:56229918..56229919, - |
| 8.5e-50 | FFCP PHASE1:Hg19::chr5:132111925..132111938,+#_2eb0b586eb1e09bae5e8b1e7771117fc | p@chr5:132111925..132111938, + |
| 8.5e-50 | FFCP PHASE2:Hg19::chr5:132111925..132111938,+#_2eb0b586eb1e09bae5e8b1e7771117fc | p@chr5:132111925..132111938, + |
| 1.09e-49 | FFCP PHASE2:Hg19::chr4:159175135..159175146,+#_86594e40210c4c5d60cc5ab8c11105f3 | p@chr4:159175135..159175146, + |
| 1.09e-49 | FFCP PHASE2:Hg19::chr18:74692038..74692048,+#_86594e40210c4c5d60cc5ab8c11105f3 | p@chr18:74692038..74692048, + |
| 1.09e-49 | FFCP PHASE1:Hg19::chr4:159175135..159175146,+#_86594e40210c4c5d60cc5ab8c11105f3 | p@chr4:159175135..159175146, + |
| 1.09e-49 | FFCP PHASE1:Hg19::chr18:74692038..74692048,+#_86594e40210c4c5d60cc5ab8c11105f3 | p@chr18:74692038..74692048, + |
| 2.55e-45 | FFCP PHASE2:Hg19::chr7:35756400..35756409,+#_9c8b1b9d76a699438ae48b37ba84540a | p4@ENST00000458087, p4@uc003tew.1 |
| 2.55e-45 | FFCP PHASE1:Hg19::chr7:35756400..35756409,+#_9c8b1b9d76a699438ae48b37ba84540a | p4@ENST00000458087, p4@uc003tew.1 |
| 4.0e-45 | FFCP PHASE2:Hg19::chr3:50306390..50306399,+#_d7bbba66c8246dad0fd90c7b5913dd01 | p8@SEMA3B |
| 4.0e-45 | FFCP PHASE1:Hg19::chr3:50306390..50306399,+#_d7bbba66c8246dad0fd90c7b5913dd01 | p8@SEMA3B |
| 5.0e-45 | FFCP PHASE1:Hg19::chr3:42687264..42687266,-#_6cb04ad684f919be741ef6f039023637 | p@chr3:42687264..42687266, - |
| 5.0e-45 | FFCP PHASE2:Hg19::chr3:42687264..42687266,-#_6cb04ad684f919be741ef6f039023637 | p@chr3:42687264..42687266, - |
| 6.26e-45 | FFCP PHASE2:Hg19::chr7:30198187..30198200,+#_b8e0485dbd7e2ce3815cc896f43b4228 | p@chr7:30198187..30198200, + |
| 6.26e-45 | FFCP PHASE1:Hg19::chr7:30198187..30198200,+#_b8e0485dbd7e2ce3815cc896f43b4228 | p@chr7:30198187..30198200, + |
| 7.83e-45 | FFCP PHASE1:Hg19::chr12:26191828..26191840,+#_cb6ab8820698a1fb688c60b722155fef | p@chr12:26191828..26191840, + |
| 7.83e-45 | FFCP PHASE1:Hg19::chr2:74667046..74667051,-#_cb6ab8820698a1fb688c60b722155fef | p20@RTKN |
| 7.83e-45 | FFCP PHASE2:Hg19::chr2:74667046..74667051,-#_cb6ab8820698a1fb688c60b722155fef | p20@RTKN |
| 7.83e-45 | FFCP PHASE2:Hg19::chr12:26191828..26191840,+#_cb6ab8820698a1fb688c60b722155fef | p@chr12:26191828..26191840, + |
| 9.79e-45 | FFCP PHASE2:Hg19::chr4:95972775..95972786,+#_3d946e4893a223642c4fce17508366de | p16@BMPR1B |
| 9.79e-45 | FFCP PHASE1:Hg19::chr4:95972775..95972786,+#_3d946e4893a223642c4fce17508366de | p16@BMPR1B |
| 1.22e-44 | FFCP PHASE1:Hg19::chr4:167759804..167759851,-#_913702875f12050c58ca53befbd5eb0b | p@chr4:167759804..167759851, - |
| 1.22e-44 | FFCP PHASE2:Hg19::chr4:167759804..167759851,-#_913702875f12050c58ca53befbd5eb0b | p@chr4:167759804..167759851, - |
| 1.53e-44 | FFCP PHASE1:Hg19::chr5:148442824..148442835,+#_4ead611c2418cbc8b28e29b1384f852f | p4@ENST00000515519 |
| 1.53e-44 | FFCP PHASE2:Hg19::chr5:148442824..148442835,+#_4ead611c2418cbc8b28e29b1384f852f | p4@ENST00000515519 |
| 1.53e-44 | FFCP PHASE1:Hg19::chr4:158493753..158493770,+#_4ead611c2418cbc8b28e29b1384f852f | p1@ENST00000455598 |
| 1.53e-44 | FFCP PHASE2:Hg19::chr4:158493753..158493770,+#_4ead611c2418cbc8b28e29b1384f852f | p1@ENST00000455598 |
| 2.98e-44 | FFCP PHASE2:Hg19::chrX:103046902..103046909,+#_cd60a07f8c8bab42bf6d94f4e37240fd | p@chrX:103046902..103046909, + |
| 2.98e-44 | FFCP PHASE1:Hg19::chrX:103046902..103046909,+#_cd60a07f8c8bab42bf6d94f4e37240fd | p@chrX:103046902..103046909, + |
| 3.99e-41 | FFCP PHASE1:Hg19::chr2:58134822..58134832,+#_6bebca4e653c32ec9697a3ad8a37e5a8 | p9@VRK2 |
| 3.99e-41 | FFCP PHASE2:Hg19::chr2:58134822..58134832,+#_6bebca4e653c32ec9697a3ad8a37e5a8 | p9@VRK2 |
| 4.89e-41 | FFCP PHASE2:Hg19::chr1:84413166..84413168,-#_c77b13f39d0eea726269e0d9bddd696b | p4@TTLL7 |
| 4.89e-41 | FFCP PHASE1:Hg19::chr1:84413166..84413168,-#_c77b13f39d0eea726269e0d9bddd696b | p4@TTLL7 |
| 5.99e-41 | FFCP PHASE1:Hg19::chr10:64133988..64133999,-#_7d89b80421a193bcff2e322fbe8d9906 | p@chr10:64133988..64133999, - |
| 5.99e-41 | FFCP PHASE2:Hg19::chr10:64133988..64133999,-#_7d89b80421a193bcff2e322fbe8d9906 | p@chr10:64133988..64133999, - |
| 7.33e-41 | FFCP PHASE2:Hg19::chr16:83741439..83741440,-#_6dc6343e43002eb6daf02bd64810ac5f | p@chr16:83741439..83741440, - |
| 7.33e-41 | FFCP PHASE1:Hg19::chr16:83741439..83741440,-#_6dc6343e43002eb6daf02bd64810ac5f | p@chr16:83741439..83741440, - |
| 1.1e-40 | FFCP PHASE1:Hg19::chr11:119846813..119846826,+#_286a18bd250f6fa1eeb871d5e1122c5b | p@chr11:119846813..119846826, + |
| 1.1e-40 | FFCP PHASE2:Hg19::chr16:19612967..19612983,+#_286a18bd250f6fa1eeb871d5e1122c5b | p7@C16orf62 |
| 1.1e-40 | FFCP PHASE2:Hg19::chr11:119846813..119846826,+#_286a18bd250f6fa1eeb871d5e1122c5b | p@chr11:119846813..119846826, + |
| 1.1e-40 | FFCP PHASE1:Hg19::chr16:19612967..19612983,+#_286a18bd250f6fa1eeb871d5e1122c5b | p7@C16orf62 |
| 2.01e-40 | FFCP PHASE1:Hg19::chr19:35783038..35783039,+#_658e68dab2da3b0dfecac71d15e9d051 | p4@MAG |
| 2.01e-40 | FFCP PHASE1:Hg19::chr21:22175450..22175461,-#_658e68dab2da3b0dfecac71d15e9d051 | p2@LINC00320 |
| 2.01e-40 | FFCP PHASE2:Hg19::chr21:22175450..22175461,-#_658e68dab2da3b0dfecac71d15e9d051 | p2@LINC00320 |
| 2.01e-40 | FFCP PHASE2:Hg19::chr19:35783038..35783039,+#_658e68dab2da3b0dfecac71d15e9d051 | p4@MAG |
| 3.01e-40 | FFCP PHASE1:Hg19::chr11:113078055..113078071,+#_b3b4d83e9cf0a9c5f914e95b3813290a | p@chr11:113078055..113078071, + |
| 3.01e-40 | FFCP PHASE2:Hg19::chr11:113078055..113078071,+#_b3b4d83e9cf0a9c5f914e95b3813290a | p@chr11:113078055..113078071, + |
| 5.49e-40 | FFCP PHASE1:Hg19::chr11:47616800..47616812,-#_5ea7c74f87003427e0ebf137ddbe1a15 | p@chr11:47616800..47616812, - |
| 5.49e-40 | FFCP PHASE2:Hg19::chr11:47616800..47616812,-#_5ea7c74f87003427e0ebf137ddbe1a15 | p@chr11:47616800..47616812, - |
| 3.28e-37 | FFCP PHASE2:Hg19::chr1:204839880..204839889,+#_e1bfdb38f50a10aaf4431d78719777ac | p7@NFASC |
| 3.28e-37 | FFCP PHASE1:Hg19::chr1:204839880..204839889,+#_e1bfdb38f50a10aaf4431d78719777ac | p7@NFASC |
| 4.73e-37 | FFCP PHASE1:Hg19::chr3:58551936..58551947,+#_690fcde85e572b1f9e1ae29ef7bd3156 | p@chr3:58551936..58551947, + |
| 4.73e-37 | FFCP PHASE1:Hg19::chr21:18885024..18885035,+#_690fcde85e572b1f9e1ae29ef7bd3156 | p4@CXADR |
