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MacroAPE 1083:EGR1 K562-EGR1-ChIP-Seq/Homer: Difference between revisions

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8-111C9;0.0988302!10788-110H5;0.266228!10792-110H9;0.354077!10765-110E9;0.235454!10829-111D1;0.155955!10830-111D2;0.237456!10831-111D3;0.645881!10832-111D4;0.311032!10833-111D5;0.130441!10764-110E8;0.195949!10770-110F5;0.155598!10399-106A3;0.228981!10400-106A4;0.649707!10405-106A9;0.576924!10834-111D6;0.748019!10835-111D7;0.0866291!10836-111D8;0.74706!10837-111D9;0.756403!10699-109G6;0.232195!10802-111A1;0.726971!10796-110I4;0.407654!10010-101C1;0.154006!10810-111A9;0.594315!10421-106C7;0.778491!10708-109H6;0.134079!12235-129G3;0.647287!12236-129G4;0.865182!12237-129G5;0.194992!10167-103B5;0.663194!10151-102I7;0.0522484!10428-106D5;0.0345113!10795-110I3;0.254509!10805-111A4;0.273969!10052-101G7;0.976147!10189-103D9;0.350277!10589-108D4;0.0962289!10425-106D2;0.714716!10427-106D4;0.042577!10702-109G9;0.743292!10432-106D9;0.46457!10496-107C1;0.619067!10718-109I7;0.301614!10011-101C2;0.0423229!10053-101G8;0.090636!10686-109F2;0.433346!10084-102B3;0.654357!10012-101C3;0.119796!10085-102B4;0.0849704!10482-107A5;0.159787!10419-106C5;0.47149!10080-102A8;0.936469!10760-110E4;0.732262!10709-109H7;0.893121!10710-109H8;0.926652!10703-109H1;0.807443!10719-109I8;0.714351!10642-109A3;0.300531!10177-103C6;0.122589!10164-103B2;0.0651438!10173-103C2;0.0631259!10166-103B4;0.338723!10083-102B2;0.150514!10188-103D8;0.204752!10552-107I3;0.02712!10553-107I4;0.192009!10013-101C4;0.662943!10536-107G5;0.265748!10618-108G6;0.701708!10423-106C9;0.903654!10785-110H2;0.784428!12238-129G6;0.650706!12239-129G7;0.699084!12240-129G8;0.611091!10416-106C2;0.879179!10801-110I9;0.326957!10766-110F1;0.338603!10824-111C5;0.21831!10825-111C6;0.630429!10826-111C7;0.257078!10454-106G4;0.231276!10409-106B4;0.971642!10638-108I8;0.329388!10636-108I6;0.8232!10513-107D9;0.00617428!10420-106C6;0.976224!10082-102B1;0.71456!10014-101C5;0.76971!10070-101I7;0.69639!10452-106G2;0.350005!10453-106G3;0.347489!10449-106F8;0.478195!10042-101F6;0.476489!10069-101I6;0.151578!10193-103E4;0.959779!10631-108I1;0.0860155!10438-106E6;0.488723!10488-107B2;0.430179!10196-103E7;0.887673!10071-101I8;0.0974451!10071-101I8;0.591384!10041-101F5;0.180724!10451-106G1;0.275035!10450-106F9;0.326372!10604-108F1;0.298839!10605-108F2;0.791522!10606-108F3;0.944988!10603-108E9;0.419789!10497-107C2;0.895026!10448-106F7;0.684039!10643-109A4;0.989564!10426-106D3;0.985438!10431-106D8;0.907123!10197-103E8;0.514492!10443-106F2;0.478967!10815-111B5;0.47014!10816-111B6;0.178349!10817-111B7;0.371593!10015-101C6;0.208819!10410-106B5;0.58839!10054-101G9;0.0234156!10758-110E2;0.420471!10711-109H9;0.458383!10040-101F4;0.281638!10470-106I2;0.0646899!10415-106C1;0.877677!10198-103E9;0.963211!10614-108G2;0.284884!10612-108F9;0.939444!10549-107H9;0.204705!10615-108G3;0.21975!10487-107B1;0.0548348!10433-106E1;0.374!10688-109F4;0.14907!10444-106F3;0.601!10444-106F3;0.966555!10485-107A8;0.957166!10413-106B8;0.781415!10175-103C4;0.897024!10161-103A8;0.0664403!12131-128D7;0.0947031!10624-108H3;0.830567!10712-109I1;0.572281!10205-103F7;0.916339!10206-103F8;0.275913!10207-103F9;0.215204!10050-101G5;0.0397122!10051-101G6;0.89098!10016-101C7;0.813211!10046-101G1;0.449425!10778-110G4;0.120148!10633-108I3;0.809225!10818-111B8;0.199106!10819-111B9;0.977334!10820-111C1;0.981799!10484-107A7;0.874067!10808-111A7;0.482712!10169-103B7;0.367927!10153-102I9;0.0340871!13425-144D5;0.0342642!13433-144E4;0.663531!13437-144E8;0.853844!11904-125F5;0.595474!11905-125F6;0.080274!10039-101F3;0.225479!10791-110H8;0.0582244!10017-101C8;0.201793!10045-101F9;0.617754!10509-107D5;0.219452!10839-111E2;0.677107!10692-109F8;0.31555!10079-102A7;0.847779!10078-102A6;0.757998!10721-110A1;0.726014!10569-108B2;0.0179497!10570-108B3;0.29981!10571-108B4;0.657979!10647-109A8;0.569177!10752-110D5;0.141067!10782-110G8;0.236109!10726-110A6;0.42282!10018-101C9;0.405492!10086-102B5;0.731307!10182-103D2;0.804696!10165-103B3;0.060097!10499-107C4;0.0707858!10408-106B3;0.158029!10019-101D1;0.574707!10068-101I5;0.257625!10075-102A3;0.0460488!10077-102A5;0.432843!10727-110A7;0.253836!10775-110G1;0.495629!10412-106B7;0.765209!12231-129F8;0.477455!12232-129F9;0.457116!12233-129G1;0.644191!12234-129G2;0.546979!10414-106B9;0.469806!10170-103B8;0.995627!10183-103D3;0.0693244!10150-102I6;0.104383!10174-103C3;0.0714455!10155-103A2;0.105987!10038-101F2;0.107791!10838-111E1;0.0829153!10759-110E3;0.477777!10514-107E1;0.836083!10465-106H6;0.778023!10691-109F7;0.196113!10843-111E6;0.941529!10844-111E7;0.502382!11747-123G1;0.564822!11748-123G2;0.43989!11749-123G3;0.490862!11750-123G4;0.25843!11751-123G5;0.623399!11840-124H4;0.740695!11752-123G6;0.134201!11753-123G7;0.218023!11754-123G8;0.825263!11755-123G9;0.701484!11756-123H1;0.453308!11833-124G6;0.834148!11760-123H5;0.30216!11836-124G9;0.837699!11758-123H3;0.837066!11835-124G8;0.881751!11762-123H7;0.770905!11838-124H2;0.99636!11757-123H2;0.726873!11759-123H4;0.980179!11761-123H6;0.705821!11842-124H6;0.938174!11837-124H1;0.72226!10568-108B1;0.863516!13230-141I8;0.139694!13231-141I9;0.291447!10696-109G3;0.209871!10493-107B7;0.37362!10494-107B8;0.973959!10850-111F4;0.00824346!10851-111F5;0.544779!10852-111F6;0.581009!10853-111F7;0.521995!10854-111F8;0.303076!10855-111F9;0.103826!10856-111G1;0.684404!10847-111F1;0.71187!10846-111E9;0.418011!10848-111F2;0.565521!10845-111E8;0.972814!10857-111G2;0.250954!10858-111G3;0.338726!10156-103A3;0.978112!11901-125F2;0.07761!11902-125F3;0.82972!11903-125F4;0.747478!10689-109F5;0.575953!10648-109A9;0.493618!10784-110H1;0.132014!10744-110C6;0.671295!10772-110F7;0.792623!10474-106I6;0.412734!10600-108E6;0.147169!10684-109E9;0.817816!12226-129F3;0.168634!12227-129F4;0.580764!10508-107D4;0.697351!10539-107G8;0.499467!10607-108F4;0.220539!10555-107I6;0.461438!10774-110F9;0.554084!10637-108I7;0.977669!10663-109C6;0.374462!10728-110A8;0.402614!10729-110A9;0.19833!10430-106D7;0.416053!10730-110B1;0.906452!10813-111B3;0.813267!10812-111B2;0.960413!10037-101F1;0.364375!10172-103C1;0.0479002!10163-103B1;0.16917!10076-102A4;0.0689853!10073-102A1;0.0791879!10036-101E9;0.184447!10195-103E6;0.114857!10277-104E7;0.0755323!10434-106E2;0.0900518!10550-107I1;0.923463!10545-107H5;0.985363!10544-107H4;0.331109!10704-109H2;0.37641!10510-107D6;0.696001!10558-107I9;0.239813!10020-101D2;0.400959!10732-110B3;0.00610287!10049-101G4;0.582271!10698-109G5;0.986609!10437-106E5;0.829255!10417-106C3;0.124718!10035-101E8;0.673632!10171-103B9;0.0680249!10157-103A4;0.137823!10034-101E7;0.0583367!10072-101I9;0.069559!10199-103F1;0.256978!10200-103F2;0.746646!10697-109G4;0.609753!10723-110A3;0.783885!10179-103C8;0.657542!10160-103A7;0.129205!10180-103C9;0.103557!10162-103A9;0.0128766!10021-101D3;0.00363174!10840-111E3;0.598156!10706-109H4;0.933875!10033-101E6;0.92608!10032-101E5;0.0834183!10490-107B4;0.0930421!10439-106E7;0.241573!10022-101D4;0.716727!10176-103C5;0.212092!10469-106I1;0.0892192!10067-101I4;0.699278!10411-106B6;0.150951!10471-106I3;0.29273!10030-101E3;0.393029!10475-106I7;0.18321!10787-110H4;0.652789!10477-106I9;0.0987772!10695-109G2;0.193356!11771-123I7;0.0788177!11772-123I8;0.873453!11773-123I9;0.756124!10093-102C3;0.591838!10442-106F1;0.587335!10442-106F1;0.625174!10201-103F3;0.800552!10639-108I9;0.0976061!11843-124H7;0.133685!11841-124H5;0.825171!10693-109F9;0.271074!10436-106E4;0.320278!10483-107A6;0.382081!10282-104F3;0.827646!10023-101D5;0.757086!10066-101I3;0.780924!10065-101I2;0.732389!10800-110I8;0.836088!10610-108F7;0.252147!10841-111E4;0.810825!10541-107H1;0.586895!10842-111E5;0.793967!10562-108A4;0.294755!10024-101D6;0.165184!10064-101I1;0.748884!10609-108F6;0.833798!10048-101G3;0.112539!10781-110G7;0.0348132!10181-103D1;0.464227!10159-103A6;0.049078!10056-101H2;0.101175!10737-110B8;0.148047!10025-101D7;0.765884!10044-101F8;0.468747!10424-106D1;0.218945!10463-106H4;0.231302!10616-108G4;0.934372!10486-107A9;0.633288!10062-101H8;0.315807!10202-103F4;0.171242!10158-103A5;0.939015!10441-106E9;0.253358!10031-101E4;0.436699!10063-101H9;0.0981153!10063-101H9;0.112885!11763-123H8;0.470592!11765-123I1;0.260417!11768-123I4;0.23839!10807-111A6;0.0785248!10790-110H7;0.235017!10798-110I6;0.737186!10786-110H3;0.270006!10591-108D6;0.8026!10593-108D8;0.213476!10590-108D5;0.770992!10026-101D8;0.772948!10096-102C6;0.282095!10168-103B6;0.134884!10154-103A1;0.0751043!10209-103G2;0.0814816!10061-101H7;0.952851!10027-101D9;0.761166!10043-101F7;0.744806!10783-110G9;0.190624!10028-101E1;0.0434319!10060-101H6;0.466176!10203-103F5;0.217772!10059-101H5;0.836352!10047-101G2;0.77426!10029-101E2;0.583944!10058-101H4;0.876064!10418-106C4;0.633891!10492-107B6;0.83051!10694-109G1;0.380071!10797-110I5;0.196352!10057-101H3;0.740363!10100-102D1;0.934971!10055-101H1;0.0285185!10204-103F6;0.462742!10191-103E2;0.273849!10563-108A5;0.541004
|name=EGR1_K562-EGR1-ChIP-Seq/Homer
|name=EGR1_K562-EGR1-ChIP-Seq/Homer
|tomtom_result=Egr1#MA0162.1;-1;1.50623e-08;7.16968e-06;1.43206e-05;11;TCCGCCCACGCA;CCGCCCACGCA;-!btd#MA0443.1;0;0.000202828;0.0965461;0.0964197;10;TCCGCCCACGCA;TCCGCCCCCT;-!Arnt::Ahr#MA0006.1;-6;0.000638403;0.30388;0.202321;6;TCCGCCCACGCA;CACGCA;-!RAP1#MA0359.1;-2;0.00221677;1.05518;0.475467;10;TCCGCCCACGCA;CACCCATACA;+!SP1#MA0079.2;1;0.00250048;1.19023;0.475467;9;TCCGCCCACGCA;CCCCGCCCCC;+!YPR022C#MA0436.1;-3;0.0043126;2.0528;0.650187;7;TCCGCCCACGCA;CCCCACG;+!MIG3#MA0339.1;-5;0.00522149;2.48543;0.650187;7;TCCGCCCACGCA;CCCCGCA;+!MIG2#MA0338.1;-5;0.00547092;2.60416;0.650187;7;TCCGCCCACGCA;CCCCGCA;+!MIG1#MA0337.1;-4;0.00751652;3.57787;0.79404;7;TCCGCCCACGCA;CCCCCGC;+!DAL81#MA0290.1;3;0.00917638;4.36796;0.872448;12;TCCGCCCACGCA;AATCCCGCCCGCGGCTTTT;-!Zfx#MA0146.1;0;0.010439;4.96894;0.902262;12;TCCGCCCACGCA;GGGGCCGAGGCCTG;+!RREB1#MA0073.1;6;0.0116691;5.55448;0.924535;12;TCCGCCCACGCA;CCCCAAACCACCCCCCCCCC;+!Klf4#MA0039.2;2;0.0139833;6.65607;0.957301;8;TCCGCCCACGCA;GCCCCACCCA;-!ZMS1#MA0441.1;-3;0.0140964;6.70989;0.957301;9;TCCGCCCACGCA;TTCCCCGCA;+!YGR067C#MA0425.1;2;0.0178359;8.4899;0.998691;12;TCCGCCCACGCA;ACCCCACTTTTTTG;+!YML081W#MA0431.1;-4;0.0187979;8.94781;0.998691;8;TCCGCCCACGCA;ACCCCGCAC;+!IME1#MA0320.1;-1;0.0194652;9.26545;0.998691;8;TCCGCCCACGCA;CCGCCGAG;+!INSM1#MA0155.1;0;0.0208057;9.90352;0.998691;12;TCCGCCCACGCA;CGCCCCCTGACA;-
}}
}}

Latest revision as of 12:37, 7 September 2012

Full Name: EGR1_K562-EGR1-ChIP-Seq/Homer

Motif matrix
POACGT
14810871187
246351710
39394011
486227650
5041400
6041202
7240705
83624930
9041400
1043333830
110395514
12284752233

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
Egr1#MA0162.1-11.50623e-087.16968e-061.43206e-0511TCCGCCCACGCACCGCCCACGCA-
btd#MA0443.100.0002028280.09654610.096419710TCCGCCCACGCATCCGCCCCCT-
Arnt::Ahr#MA0006.1-60.0006384030.303880.2023216TCCGCCCACGCACACGCA-
RAP1#MA0359.1-20.002216771.055180.47546710TCCGCCCACGCACACCCATACA+
SP1#MA0079.210.002500481.190230.4754679TCCGCCCACGCACCCCGCCCCC+
YPR022C#MA0436.1-30.00431262.05280.6501877TCCGCCCACGCACCCCACG+
MIG3#MA0339.1-50.005221492.485430.6501877TCCGCCCACGCACCCCGCA+
MIG2#MA0338.1-50.005470922.604160.6501877TCCGCCCACGCACCCCGCA+
MIG1#MA0337.1-40.007516523.577870.794047TCCGCCCACGCACCCCCGC+
DAL81#MA0290.130.009176384.367960.87244812TCCGCCCACGCAAATCCCGCCCGCGGCTTTT-
Zfx#MA0146.100.0104394.968940.90226212TCCGCCCACGCAGGGGCCGAGGCCTG+
RREB1#MA0073.160.01166915.554480.92453512TCCGCCCACGCACCCCAAACCACCCCCCCCCC+
Klf4#MA0039.220.01398336.656070.9573018TCCGCCCACGCAGCCCCACCCA-
ZMS1#MA0441.1-30.01409646.709890.9573019TCCGCCCACGCATTCCCCGCA+
YGR067C#MA0425.120.01783598.48990.99869112TCCGCCCACGCAACCCCACTTTTTTG+
YML081W#MA0431.1-40.01879798.947810.9986918TCCGCCCACGCAACCCCGCAC+
IME1#MA0320.1-10.01946529.265450.9986918TCCGCCCACGCACCGCCGAG+
INSM1#MA0155.100.02080579.903520.99869112TCCGCCCACGCACGCCCCCTGACA-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:EGR1_K562-EGR1-ChIP-Seq/Homer&oldid=2133716"