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MacroAPE 1083:BPTF si: Difference between revisions

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23!10788-110H5;0.724005!10792-110H9;0.734574!10765-110E9;0.720995!10829-111D1;0.933783!10830-111D2;0.533276!10831-111D3;0.321686!10832-111D4;0.917518!10833-111D5;0.727282!10764-110E8;0.782242!10770-110F5;0.0885442!10399-106A3;0.488525!10400-106A4;0.991434!10405-106A9;0.98573!10834-111D6;0.938795!10835-111D7;0.860429!10836-111D8;0.249174!10837-111D9;0.409001!10699-109G6;0.69188!10802-111A1;0.537772!10796-110I4;0.606423!10010-101C1;0.176882!10810-111A9;0.907002!10421-106C7;0.594966!10708-109H6;0.784869!12235-129G3;0.485204!12236-129G4;0.851236!12237-129G5;0.733066!10167-103B5;0.906587!10151-102I7;0.76153!10428-106D5;0.794651!10795-110I3;0.849196!10805-111A4;0.0372683!10052-101G7;0.0524855!10189-103D9;0.665636!10589-108D4;0.765883!10425-106D2;0.408467!10427-106D4;0.733931!10702-109G9;0.0870473!10432-106D9;0.654743!10496-107C1;0.322057!10718-109I7;0.00362478!10011-101C2;0.914701!10053-101G8;0.266482!10686-109F2;0.66668!10084-102B3;0.0462304!10012-101C3;0.75626!10085-102B4;0.766055!10482-107A5;0.257936!10419-106C5;0.592286!10080-102A8;0.772287!10760-110E4;0.279027!10709-109H7;0.0375944!10710-109H8;0.631911!10703-109H1;0.094923!10719-109I8;0.865313!10642-109A3;0.452436!10177-103C6;0.338915!10164-103B2;0.637249!10173-103C2;0.595414!10166-103B4;0.295207!10083-102B2;0.554006!10188-103D8;0.514052!10552-107I3;0.969694!10553-107I4;0.351697!10013-101C4;0.996038!10536-107G5;0.462064!10618-108G6;0.710376!10423-106C9;0.355741!10785-110H2;0.427991!12238-129G6;0.178645!12239-129G7;0.793189!12240-129G8;0.835118!10416-106C2;0.638882!10801-110I9;0.469866!10766-110F1;0.946619!10824-111C5;0.674135!10825-111C6;0.0568763!10826-111C7;0.0449439!10454-106G4;0.0385004!10409-106B4;0.0886687!10638-108I8;0.646568!10636-108I6;0.102585!10513-107D9;0.386548!10420-106C6;0.232374!10082-102B1;0.520273!10014-101C5;0.746871!10070-101I7;0.66371!10452-106G2;0.365366!10453-106G3;0.0170269!10449-106F8;0.0233124!10042-101F6;0.0221529!10069-101I6;0.894008!10193-103E4;0.427599!10631-108I1;0.745501!10438-106E6;0.625132!10488-107B2;0.00621142!10196-103E7;0.66723!10071-101I8;0.148065!10071-101I8;0.545438!10041-101F5;0.426359!10451-106G1;0.425426!10450-106F9;0.853152!10604-108F1;0.432626!10605-108F2;0.967429!10606-108F3;0.96635!10603-108E9;0.800254!10497-107C2;0.822461!10448-106F7;0.86103!10643-109A4;0.796156!10426-106D3;0.753487!10431-106D8;0.645233!10197-103E8;0.852831!10443-106F2;0.918941!10815-111B5;0.920406!10816-111B6;0.327841!10817-111B7;0.430144!10015-101C6;0.385177!10410-106B5;0.72666!10054-101G9;0.324791!10758-110E2;0.959179!10711-109H9;0.743528!10040-101F4;0.688232!10470-106I2;0.729476!10415-106C1;0.611453!10198-103E9;0.938616!10614-108G2;0.960073!10612-108F9;0.625411!10549-107H9;0.84757!10615-108G3;0.654383!10487-107B1;0.0636197!10433-106E1;0.562038!10688-109F4;0.948705!10444-106F3;0.251075!10444-106F3;0.962631!10485-107A8;0.999048!10413-106B8;0.17308!10175-103C4;0.624793!10161-103A8;0.611068!12131-128D7;0.675948!10624-108H3;0.22985!10712-109I1;0.566307!10205-103F7;0.149188!10206-103F8;0.757153!10207-103F9;0.593363!10050-101G5;0.90897!10051-101G6;0.856785!10016-101C7;0.240949!10046-101G1;0.27072!10778-110G4;0.409183!10633-108I3;0.88765!10818-111B8;0.429294!10819-111B9;0.128795!10820-111C1;0.102802!10484-107A7;0.134395!10808-111A7;0.769806!10169-103B7;0.0590784!10153-102I9;0.708837!13425-144D5;0.918507!13433-144E4;0.284485!13437-144E8;0.426074!11904-125F5;0.28084!11905-125F6;0.165006!10039-101F3;0.120993!10791-110H8;0.650337!10017-101C8;0.614501!10045-101F9;0.347474!10509-107D5;0.219374!10839-111E2;0.246422!10692-109F8;0.970584!10079-102A7;0.705807!10078-102A6;0.650508!10721-110A1;0.173223!10569-108B2;0.100465!10570-108B3;0.769278!10571-108B4;0.939941!10647-109A8;0.792876!10752-110D5;0.109788!10782-110G8;0.914148!10726-110A6;0.557981!10018-101C9;0.986742!10086-102B5;0.944287!10182-103D2;0.944165!10165-103B3;0.993299!10499-107C4;0.793715!10408-106B3;0.183507!10019-101D1;0.511396!10068-101I5;0.415678!10075-102A3;0.160032!10077-102A5;0.317513!10727-110A7;0.801777!10775-110G1;0.273878!10412-106B7;0.0204903!12231-129F8;0.703682!12232-129F9;0.99202!12233-129G1;0.549852!12234-129G2;0.65208!10414-106B9;0.884858!10170-103B8;0.783078!10183-103D3;0.607597!10150-102I6;0.681929!10174-103C3;0.685916!10155-103A2;0.713395!10038-101F2;0.779058!10838-111E1;0.91388!10759-110E3;0.858453!10514-107E1;0.582171!10465-106H6;0.581546!10691-109F7;0.864078!10843-111E6;0.330586!10844-111E7;0.180221!11747-123G1;0.456458!11748-123G2;0.993681!11749-123G3;0.87963!11750-123G4;0.47337!11751-123G5;0.777464!11840-124H4;0.585789!11752-123G6;0.0374802!11753-123G7;0.303126!11754-123G8;0.681142!11755-123G9;0.921927!11756-123H1;0.807808!11833-124G6;0.284819!11760-123H5;0.865708!11836-124G9;0.137765!11758-123H3;0.787012!11835-124G8;0.877446!11762-123H7;0.864531!11838-124H2;0.817685!11757-123H2;0.745146!11759-123H4;0.111548!11761-123H6;0.317599!11842-124H6;0.326432!11837-124H1;0.837015!10568-108B1;0.652644!13230-141I8;0.861193!13231-141I9;0.883681!10696-109G3;0.82437!10493-107B7;0.768604!10494-107B8;0.532329!10850-111F4;0.705063!10851-111F5;0.903817!10852-111F6;0.391549!10853-111F7;0.905475!10854-111F8;0.834296!10855-111F9;0.732644!10856-111G1;0.397157!10847-111F1;0.710119!10846-111E9;0.591299!10848-111F2;0.219926!10845-111E8;0.370585!10857-111G2;0.9666!10858-111G3;0.108052!10156-103A3;0.523342!11901-125F2;0.683515!11902-125F3;0.30362!11903-125F4;0.496731!10689-109F5;0.323757!10648-109A9;0.463021!10784-110H1;0.286057!10744-110C6;0.569974!10772-110F7;0.136042!10474-106I6;0.744771!10600-108E6;0.798316!10684-109E9;0.681573!12226-129F3;0.125805!12227-129F4;0.664685!10508-107D4;0.546761!10539-107G8;0.620556!10607-108F4;0.951063!10555-107I6;0.312088!10774-110F9;0.331613!10637-108I7;0.577061!10663-109C6;0.00148025!10728-110A8;0.161607!10729-110A9;0.151497!10430-106D7;0.940767!10730-110B1;0.920138!10813-111B3;0.0283132!10812-111B2;0.762953!10037-101F1;0.858528!10172-103C1;0.667759!10163-103B1;0.753611!10076-102A4;0.747823!10073-102A1;0.60995!10036-101E9;0.276646!10195-103E6;0.510467!10277-104E7;0.687103!10434-106E2;0.431878!10550-107I1;0.0854191!10545-107H5;0.107369!10544-107H4;0.862674!10704-109H2;0.473025!10510-107D6;0.379004!10558-107I9;0.809988!10020-101D2;0.729633!10732-110B3;0.558082!10049-101G4;0.890419!10698-109G5;0.832213!10437-106E5;0.311231!10417-106C3;0.548084!10035-101E8;0.369788!10171-103B9;0.747709!10157-103A4;0.727301!10034-101E7;0.652027!10072-101I9;0.659895!10199-103F1;0.263847!10200-103F2;0.698575!10697-109G4;0.642172!10723-110A3;0.456084!10179-103C8;0.220664!10160-103A7;0.626417!10180-103C9;0.470327!10162-103A9;0.259298!10021-101D3;0.286959!10840-111E3;0.160289!10706-109H4;0.327419!10033-101E6;0.48298!10032-101E5;0.926898!10490-107B4;0.681464!10439-106E7;0.825186!10022-101D4;0.727199!10176-103C5;0.250051!10469-106I1;0.466246!10067-101I4;0.93402!10411-106B6;0.523856!10471-106I3;0.800923!10030-101E3;0.458085!10475-106I7;0.722238!10787-110H4;0.814367!10477-106I9;0.220375!10695-109G2;0.0850045!11771-123I7;0.00522573!11772-123I8;0.815538!11773-123I9;0.46997!10093-102C3;0.0334409!10442-106F1;0.63163!10442-106F1;0.531751!10201-103F3;0.503649!10639-108I9;0.441551!11843-124H7;0.0272053!11841-124H5;0.766469!10693-109F9;0.560103!10436-106E4;0.822864!10483-107A6;0.572577!10282-104F3;0.0827478!10023-101D5;0.191827!10066-101I3;0.361347!10065-101I2;0.248933!10800-110I8;0.756621!10610-108F7;0.663659!10841-111E4;0.000915334!10541-107H1;0.00710181!10842-111E5;0.31967!10562-108A4;0.723247!10024-101D6;0.512937!10064-101I1;0.772917!10609-108F6;0.889987!10048-101G3;0.0498711!10781-110G7;0.233848!10181-103D1;0.0194174!10159-103A6;0.715782!10056-101H2;0.827232!10737-110B8;0.604395!10025-101D7;0.800648!10044-101F8;0.79313!10424-106D1;0.875069!10463-106H4;0.111296!10616-108G4;0.406752!10486-107A9;0.837581!10062-101H8;0.738794!10202-103F4;0.549272!10158-103A5;0.411785!10441-106E9;0.938785!10031-101E4;0.606906!10063-101H9;0.688948!10063-101H9;0.331956!11763-123H8;0.671088!11765-123I1;0.635702!11768-123I4;0.536688!10807-111A6;0.958665!10790-110H7;0.402349!10798-110I6;0.139812!10786-110H3;0.701538!10591-108D6;0.110315!10593-108D8;0.334929!10590-108D5;0.326215!10026-101D8;0.614768!10096-102C6;0.0753344!10168-103B6;0.223557!10154-103A1;0.89394!10209-103G2;0.752682!10061-101H7;0.454962!10027-101D9;0.557947!10043-101F7;0.129788!10783-110G9;0.559457!10028-101E1;0.887979!10060-101H6;0.0665273!10203-103F5;0.253946!10059-101H5;0.384447!10047-101G2;0.802958!10029-101E2;0.120634!10058-101H4;0.245318!10418-106C4;0.678592!10492-107B6;0.824297!10694-109G1;0.732735!10797-110I5;0.0801758!10057-101H3;0.681411!10100-102D1;0.90434!10055-101H1;0.120376!10204-103F6;0.380403!10191-103E2;0.108047!10563-108A5;0.854655
|name=BPTF_si
|name=BPTF_si
|tomtom_result=NDT80#MA0343.1;4;0.000105634;0.0502819;0.10022;12;TTTGTTGTGTTC;TTGCGTTTTTGTGGCCGGAAA;-!hb#MA0049.1;-2;0.00137071;0.652459;0.44788;10;TTTGTTGTGTTC;TTTTTTATGC;-!SRY#MA0084.1;-3;0.00212849;1.01316;0.44788;9;TTTGTTGTGTTC;ATTGTTTAC;-!BRCA1#MA0133.1;-1;0.00219079;1.04281;0.44788;7;TTTGTTGTGTTC;GTGTTGT;-!br_Z3#MA0012.1;0;0.00259508;1.23526;0.44788;11;TTTGTTGTGTTC;CTTTTAGTTTA;-!HMG-1#MA0044.1;-3;0.00283246;1.34825;0.44788;9;TTTGTTGTGTTC;GTTGTACTC;+!HCM1#MA0317.1;-4;0.00336115;1.59991;0.455553;8;TTTGTTGTGTTC;TTGTTTAT;-!En1#MA0027.1;-1;0.00385326;1.83415;0.456969;11;TTTGTTGTGTTC;AAGTAGTGCCC;+!FKH1#MA0296.1;2;0.00713687;3.39715;0.698001;12;TTTGTTGTGTTC;TCCTCTTTGTTTACAATTCA;-!MGA1#MA0336.1;0;0.00820526;3.90571;0.698001;12;TTTGTTGTGTTC;TTTAGAGTGTTCTATAGTCCT;-!id1#MA0120.1;-1;0.00953921;4.54067;0.698001;11;TTTGTTGTGTTC;TTTTCCTTTTCG;+!D#MA00445.1;0;0.00961754;4.57795;0.698001;11;TTTGTTGTGTTC;TCCATTGTTCT;+!HMG-I/Y#MA0045.1;4;0.0098495;4.68836;0.698001;12;TTTGTTGTGTTC;GTTTTTCCATTTGTTG;-!AZF1#MA0277.1;0;0.0103;4.90278;0.698001;9;TTTGTTGTGTTC;TTTCTTTTT;-!RUNX1#MA0002.2;-2;0.0127816;6.08403;0.808263;10;TTTGTTGTGTTC;GTCTGTGGTTT;+!SFL1#MA0377.1;5;0.0138969;6.61493;0.808263;12;TTTGTTGTGTTC;TTTTATTTCTTCTATTCTCTA;-!FOXI1#MA0042.1;2;0.0149382;7.1106;0.808263;10;TTTGTTGTGTTC;GGATGTTTGTTT;+!br_Z1#MA0010.1;-1;0.0157858;7.51404;0.808263;11;TTTGTTGTGTTC;GATTTGTCTATTAC;-!Pax4#MA0068.1;8;0.0164188;7.81533;0.808263;12;TTTGTTGTGTTC;GGGGGGGGAGTGGAGTATTGGAAATTTTTC;-!RREB1#MA0073.1;5;0.0170431;8.11251;0.808263;12;TTTGTTGTGTTC;TGGGGGGGGGTGGTTTGGGG;-!RUNX1#MA0002.2;-2;0.0187425;8.92141;0.808263;10;TTTGTTGTGTTC;TATTGTGGTTA;+!slp1#MA0458.1;-4;0.0187425;8.92141;0.808263;8;TTTGTTGTGTTC;TTGTTTACATT;+!SOX10#MA0442.1;-2;0.0209072;9.95185;0.849348;6;TTTGTTGTGTTC;CTTTGT;+
}}
}}

Latest revision as of 13:46, 7 September 2012

Full Name: BPTF_si

Motif matrix
POACGT
11.99999999999999931.99999999999999938.09.000000000000009
20.99999999999999970.08.011.99999999999999
31.99999999999999930.99999999999999973.9999999999999914.000000000000007
43.00000000000000274.9999999999999986.9999999999999936.000000000000005
50.99999999999999970.00.019.999999999999993
60.00.00.999999999999999719.999999999999993
70.00.016.04.999999999999998
80.99999999999999973.00000000000000270.017.00000000000001
90.99999999999999970.09.9999999999999969.999999999999996
100.99999999999999971.99999999999999936.99999999999999311.000000000000004
113.00000000000000273.00000000000000276.0000000000000059.000000000000009
123.999999999999999.0000000000000096.0000000000000051.9999999999999993

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
NDT80#MA0343.140.0001056340.05028190.1002212TTTGTTGTGTTCTTGCGTTTTTGTGGCCGGAAA-
hb#MA0049.1-20.001370710.6524590.4478810TTTGTTGTGTTCTTTTTTATGC-
SRY#MA0084.1-30.002128491.013160.447889TTTGTTGTGTTCATTGTTTAC-
BRCA1#MA0133.1-10.002190791.042810.447887TTTGTTGTGTTCGTGTTGT-
br_Z3#MA0012.100.002595081.235260.4478811TTTGTTGTGTTCCTTTTAGTTTA-
HMG-1#MA0044.1-30.002832461.348250.447889TTTGTTGTGTTCGTTGTACTC+
HCM1#MA0317.1-40.003361151.599910.4555538TTTGTTGTGTTCTTGTTTAT-
En1#MA0027.1-10.003853261.834150.45696911TTTGTTGTGTTCAAGTAGTGCCC+
FKH1#MA0296.120.007136873.397150.69800112TTTGTTGTGTTCTCCTCTTTGTTTACAATTCA-
MGA1#MA0336.100.008205263.905710.69800112TTTGTTGTGTTCTTTAGAGTGTTCTATAGTCCT-
id1#MA0120.1-10.009539214.540670.69800111TTTGTTGTGTTCTTTTCCTTTTCG+
D#MA00445.100.009617544.577950.69800111TTTGTTGTGTTCTCCATTGTTCT+
HMG-I/Y#MA0045.140.00984954.688360.69800112TTTGTTGTGTTCGTTTTTCCATTTGTTG-
AZF1#MA0277.100.01034.902780.6980019TTTGTTGTGTTCTTTCTTTTT-
RUNX1#MA0002.2-20.01278166.084030.80826310TTTGTTGTGTTCGTCTGTGGTTT+
SFL1#MA0377.150.01389696.614930.80826312TTTGTTGTGTTCTTTTATTTCTTCTATTCTCTA-
FOXI1#MA0042.120.01493827.11060.80826310TTTGTTGTGTTCGGATGTTTGTTT+
br_Z1#MA0010.1-10.01578587.514040.80826311TTTGTTGTGTTCGATTTGTCTATTAC-
Pax4#MA0068.180.01641887.815330.80826312TTTGTTGTGTTCGGGGGGGGAGTGGAGTATTGGAAATTTTTC-
RREB1#MA0073.150.01704318.112510.80826312TTTGTTGTGTTCTGGGGGGGGGTGGTTTGGGG-
RUNX1#MA0002.2-20.01874258.921410.80826310TTTGTTGTGTTCTATTGTGGTTA+
slp1#MA0458.1-40.01874258.921410.8082638TTTGTTGTGTTCTTGTTTACATT+
SOX10#MA0442.1-20.02090729.951850.8493486TTTGTTGTGTTCCTTTGT+
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