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MacroAPE 1083:GCAGGAAACCACAG,motif220: Difference between revisions

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(Created page with "{{Macroape_1083 |PWM=PO;A;C;G;T!1;451.143;87.318;711.774;72.765!2;108.486;804.384;354.564;55.566!3;968.436;220.941;58.212;75.411!4;99.225;55.566;1092.798;75.411!5;153.468;88....")
 
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22H7;0.0808844!11216-116B1;0.0388127!12179-129A1;0.0135599!12180-129A2;9.65799e-09!12181-129A3;1.71267e-07!12176-128I7;1.51186e-08!12177-128I8;9.62499e-08!12182-129A4;1.0746e-07!12183-129A5;1.61032e-07!12184-129A6;3.835e-08!10809-111A8;1.61261e-07!10597-108E3;0.120509!10717-109I6;0.534368!10455-106G5;0.00237707!10534-107G3;0.965331!10429-106D6;0.47227!10464-106H5;0.898681!10827-111C8;0.761077!10789-110H6;0.217714!10828-111C9;0.0495352!10788-110H5;0.00480363!10792-110H9;0.844174!10765-110E9;0.150307!10829-111D1;0.788678!10830-111D2;0.536992!10831-111D3;0.0405213!10832-111D4;0.0078677!10833-111D5;0.582836!10764-110E8;0.746231!10770-110F5;0.772182!10399-106A3;0.138291!10400-106A4;0.88637!10405-106A9;0.88776!10834-111D6;0.854424!10835-111D7;0.408632!10836-111D8;0.967369!10837-111D9;0.654843!10699-109G6;0.321329!10802-111A1;0.209941!10796-110I4;0.248355!10010-101C1;0.0124547!10810-111A9;0.0192817!10421-106C7;0.0792848!10708-109H6;0.482722!12235-129G3;0.0549117!12236-129G4;0.112407!12237-129G5;0.00689592!10167-103B5;0.0849859!10151-102I7;0.746742!10428-106D5;0.966106!10795-110I3;0.0518068!10805-111A4;0.88998!10052-101G7;0.0127572!10189-103D9;0.0827672!10589-108D4;0.0002484!10425-106D2;1.09424e-05!10427-106D4;0.313139!10702-109G9;0.595937!10432-106D9;0.938115!10496-107C1;0.43508!10718-109I7;0.399065!10011-101C2;0.672543!10053-101G8;0.0608471!10686-109F2;6.38574e-06!10084-102B3;0.123012!10012-101C3;0.595458!10085-102B4;0.838204!10482-107A5;0.330487!10419-106C5;0.144469!10080-102A8;0.0413263!10760-110E4;0.181174!10709-109H7;0.133803!10710-109H8;0.237719!10703-109H1;0.00361288!10719-109I8;0.000362896!10642-109A3;0.00784539!10177-103C6;0.000868223!10164-103B2;0.669426!10173-103C2;0.684465!10166-103B4;0.256401!10083-102B2;0.472778!10188-103D8;0.372202!10552-107I3;0.702401!10553-107I4;0.0289166!10013-101C4;0.0086508!10536-107G5;0.239218!10618-108G6;0.928166!10423-106C9;0.0243796!10785-110H2;0.00156906!12238-129G6;0.00143898!12239-129G7;0.604649!12240-129G8;0.156756!10416-106C2;0.161517!10801-110I9;0.899902!10766-110F1;0.0124642!10824-111C5;0.158756!10825-111C6;0.962566!10826-111C7;0.983544!10454-106G4;0.70377!10409-106B4;0.692539!10638-108I8;0.272647!10636-108I6;0.0806935!10513-107D9;0.185238!10420-106C6;4.36436e-05!10082-102B1;0.00792605!10014-101C5;0.261811!10070-101I7;0.653966!10452-106G2;0.460438!10453-106G3;0.977422!10449-106F8;0.649866!10042-101F6;0.808335!10069-101I6;0.898047!10193-103E4;0.175988!10631-108I1;0.7679!10438-106E6;0.303528!10488-107B2;0.0899498!10196-103E7;0.0345532!10071-101I8;0.891088!10071-101I8;0.443877!10041-101F5;0.378906!10451-106G1;0.0369053!10450-106F9;0.00144058!10604-108F1;1.35602e-05!10605-108F2;0.674534!10606-108F3;0.396478!10603-108E9;0.740299!10497-107C2;0.709885!10448-106F7;0.0298178!10643-109A4;0.22252!10426-106D3;0.0021356!10431-106D8;0.0228748!10197-103E8;0.0182356!10443-106F2;0.384904!10815-111B5;0.539573!10816-111B6;0.180429!10817-111B7;0.211098!10015-101C6;0.203476!10410-106B5;0.31054!10054-101G9;0.194906!10758-110E2;0.906921!10711-109H9;0.413916!10040-101F4;0.771668!10470-106I2;0.732665!10415-106C1;0.00482604!10198-103E9;0.559755!10614-108G2;0.12874!10612-108F9;0.0518468!10549-107H9;0.00227792!10615-108G3;0.0442565!10487-107B1;0.0519567!10433-106E1;0.459362!10688-109F4;0.47519!10444-106F3;0.00743746!10444-106F3;0.361148!10485-107A8;0.338196!10413-106B8;0.286409!10175-103C4;0.0075525!10161-103A8;0.972913!12131-128D7;0.724178!10624-108H3;0.121037!10712-109I1;0.221332!10205-103F7;0.549364!10206-103F8;0.055715!10207-103F9;0.266224!10050-101G5;0.00275915!10051-101G6;0.741242!10016-101C7;0.219359!10046-101G1;0.026696!10778-110G4;0.196643!10633-108I3;0.311106!10818-111B8;0.0513466!10819-111B9;0.00719741!10820-111C1;0.00891752!10484-107A7;0.00912333!10808-111A7;0.0791156!10169-103B7;0.865015!10153-102I9;0.84046!13425-144D5;0.916208!13433-144E4;9.75028e-06!13437-144E8;5.25172e-06!11904-125F5;5.72207e-06!11905-125F6;0.383033!10039-101F3;0.658437!10791-110H8;0.772863!10017-101C8;0.00154216!10045-101F9;0.873974!10509-107D5;0.783886!10839-111E2;0.972425!10692-109F8;0.0961554!10079-102A7;0.00417015!10078-102A6;0.0442111!10721-110A1;0.131511!10569-108B2;0.213252!10570-108B3;0.920602!10571-108B4;0.849256!10647-109A8;0.799002!10752-110D5;0.660699!10782-110G8;0.429962!10726-110A6;0.870403!10018-101C9;0.145845!10086-102B5;0.598041!10182-103D2;0.849266!10165-103B3;0.956697!10499-107C4;0.727403!10408-106B3;0.179844!10019-101D1;0.897759!10068-101I5;0.00371094!10075-102A3;0.0440388!10077-102A5;0.00165641!10727-110A7;2.31294e-08!10775-110G1;0.231429!10412-106B7;0.274413!12231-129F8;0.0365743!12232-129F9;0.400376!12233-129G1;0.301369!12234-129G2;0.38143!10414-106B9;0.67398!10170-103B8;0.00842101!10183-103D3;0.622289!10150-102I6;0.639378!10174-103C3;0.899373!10155-103A2;0.906466!10038-101F2;0.784358!10838-111E1;0.744934!10759-110E3;0.00122176!10514-107E1;0.0820176!10465-106H6;0.216454!10691-109F7;0.130027!10843-111E6;0.972025!10844-111E7;0.00220253!11747-123G1;0.0116664!11748-123G2;0.389508!11749-123G3;0.850597!11750-123G4;0.684447!11751-123G5;0.337171!11840-124H4;0.806752!11752-123G6;0.792695!11753-123G7;0.75021!11754-123G8;0.466462!11755-123G9;0.700583!11756-123H1;0.890414!11833-124G6;0.173665!11760-123H5;0.330884!11836-124G9;0.766319!11758-123H3;0.83912!11835-124G8;0.983061!11762-123H7;0.299004!11838-124H2;0.825551!11757-123H2;0.744493!11759-123H4;0.330259!11761-123H6;0.0323083!11842-124H6;0.622149!11837-124H1;0.0344193!10568-108B1;0.187952!13230-141I8;0.346575!13231-141I9;0.61321!10696-109G3;0.646305!10493-107B7;0.8113!10494-107B8;0.743324!10850-111F4;0.00479019!10851-111F5;0.00728702!10852-111F6;0.0424828!10853-111F7;0.00921237!10854-111F8;0.0055363!10855-111F9;0.00202855!10856-111G1;7.66509e-05!10847-111F1;0.00373219!10846-111E9;0.130747!10848-111F2;0.0201294!10845-111E8;0.0600682!10857-111G2;0.219018!10858-111G3;0.000871908!10156-103A3;0.0575135!11901-125F2;0.914695!11902-125F3;0.925424!11903-125F4;0.730797!10689-109F5;0.964521!10648-109A9;0.0581251!10784-110H1;0.0658017!10744-110C6;0.680526!10772-110F7;0.0576044!10474-106I6;0.637376!10600-108E6;0.449831!10684-109E9;0.0606119!12226-129F3;0.855819!12227-129F4;2.35468e-05!10508-107D4;0.840031!10539-107G8;0.0456322!10607-108F4;0.0188626!10555-107I6;0.000497663!10774-110F9;0.00373333!10637-108I7;7.95463e-07!10663-109C6;0.023691!10728-110A8;0.0295758!10729-110A9;0.00387596!10430-106D7;0.540387!10730-110B1;0.839884!10813-111B3;0.00371999!10812-111B2;0.690863!10037-101F1;0.615922!10172-103C1;0.813978!10163-103B1;0.645461!10076-102A4;0.947598!10073-102A1;0.612783!10036-101E9;0.418011!10195-103E6;0.728833!10277-104E7;0.695868!10434-106E2;0.775559!10550-107I1;0.0804669!10545-107H5;0.0381436!10544-107H4;0.0118903!10704-109H2;0.0926116!10510-107D6;0.581126!10558-107I9;0.817641!10020-101D2;0.0521102!10732-110B3;0.427907!10049-101G4;0.924898!10698-109G5;0.0165329!10437-106E5;0.0340063!10417-106C3;0.717756!10035-101E8;0.330169!10171-103B9;0.768542!10157-103A4;0.653999!10034-101E7;0.843039!10072-101I9;0.802843!10199-103F1;0.300875!10200-103F2;0.112197!10697-109G4;0.271165!10723-110A3;0.0344102!10179-103C8;0.022541!10160-103A7;0.882522!10180-103C9;0.747379!10162-103A9;0.224414!10021-101D3;0.516773!10840-111E3;0.517567!10706-109H4;0.917497!10033-101E6;0.434789!10032-101E5;0.992859!10490-107B4;0.714858!10439-106E7;0.0256102!10022-101D4;0.276689!10176-103C5;0.269502!10469-106I1;0.599661!10067-101I4;0.0378126!10411-106B6;0.851167!10471-106I3;0.270277!10030-101E3;0.181058!10475-106I7;0.536615!10787-110H4;0.00637331!10477-106I9;0.0891144!10695-109G2;0.00430406!11771-123I7;0.593015!11772-123I8;0.00848365!11773-123I9;0.000543349!10093-102C3;0.175471!10442-106F1;0.641866!10442-106F1;0.740505!10201-103F3;0.489787!10639-108I9;0.641045!11843-124H7;0.135804!11841-124H5;0.241583!10693-109F9;0.0282375!10436-106E4;0.0137332!10483-107A6;0.00778511!10282-104F3;0.00876194!10023-101D5;0.268369!10066-101I3;0.278895!10065-101I2;0.165385!10800-110I8;0.736734!10610-108F7;0.0101058!10841-111E4;0.00874783!10541-107H1;0.00841091!10842-111E5;0.00409336!10562-108A4;0.0200234!10024-101D6;0.00263976!10064-101I1;0.510437!10609-108F6;0.498783!10048-101G3;0.2089!10781-110G7;0.126978!10181-103D1;0.0682117!10159-103A6;0.964024!10056-101H2;0.623817!10737-110B8;0.728141!10025-101D7;0.725363!10044-101F8;0.000156503!10424-106D1;0.00169534!10463-106H4;0.874333!10616-108G4;0.0236815!10486-107A9;0.532451!10062-101H8;0.84256!10202-103F4;0.199191!10158-103A5;0.0711306!10441-106E9;0.436113!10031-101E4;0.0262586!10063-101H9;0.725162!10063-101H9;0.34965!11763-123H8;0.771084!11765-123I1;0.71504!11768-123I4;0.677625!10807-111A6;0.568694!10790-110H7;0.0169303!10798-110I6;0.000221631!10786-110H3;0.00100036!10591-108D6;0.0078112!10593-108D8;0.0084844!10590-108D5;0.160295!10026-101D8;0.0168!10096-102C6;0.782964!10168-103B6;0.0161899!10154-103A1;0.986293!10209-103G2;0.853718!10061-101H7;0.172613!10027-101D9;0.454369!10043-101F7;0.0318168!10783-110G9;7.16676e-06!10028-101E1;0.832708!10060-101H6;0.569227!10203-103F5;0.517952!10059-101H5;0.5077!10047-101G2;0.717687!10029-101E2;0.00229383!10058-101H4;0.054343!10418-106C4;0.202158!10492-107B6;0.101113!10694-109G1;0.0949997!10797-110I5;0.31996!10057-101H3;0.0947587!10100-102D1;0.861377!10055-101H1;0.140941!10204-103F6;0.766125!10191-103E2;0.0339971!10563-108A5;0.000592988
|name=GCAGGAAACCACAG,motif220,CNhs12575,T:1323.0(26.20%),B:13935.0(18.59%),P:1e-39
|name=GCAGGAAACCACAG,motif220,CNhs12575,T:1323.0(26.20%),B:13935.0(18.59%),P:1e-39
|tomtom_result=FEV#MA0156.1;-1;0.00158097;0.752541;0.728824;8;GCAGGAAACCACAG;CAGGAAAT;+!RUNX1#MA0002.2;-5;0.00161585;0.769146;0.728824;9;GCAGGAAACCACAG;AAACCACAGAC;-!REL#MA0101.1;-3;0.00322572;1.53544;0.728824;10;GCAGGAAACCACAG;GGAAATCCCC;-!ETS1#MA0098.1;-2;0.00377703;1.79787;0.728824;6;GCAGGAAACCACAG;CGGAAA;-!Eip74EF#MA0026.1;-1;0.00390936;1.86086;0.728824;7;GCAGGAAACCACAG;CCGGAAG;+!SPIB#MA0081.1;0;0.00466848;2.2222;0.728824;7;GCAGGAAACCACAG;AGAGGAA;+!GCR2#MA0305.1;-2;0.00621779;2.95967;0.728824;7;GCAGGAAACCACAG;AGGAAGC;-!En1#MA0027.1;-3;0.00655102;3.11828;0.728824;11;GCAGGAAACCACAG;GAACACTACTT;-!che-1#MA0260.1;-4;0.00730751;3.47838;0.728824;6;GCAGGAAACCACAG;GAAACC;+!ELF5#MA0136.1;-1;0.00766575;3.6489;0.728824;9;GCAGGAAACCACAG;AAGGAAGTA;-!Su(H)#MA0085.1;2;0.00973677;4.6347;0.833351;14;GCAGGAAACCACAG;CTGTGGGAAACGAGAT;+!Tal1::Gata1#MA0140.1;-1;0.0105182;5.00666;0.833351;13;GCAGGAAACCACAG;CTGGTGGGGACAGATAAG;+!run::Bgb#MA0242.1;-5;0.0129265;6.15302;0.883618;9;GCAGGAAACCACAG;TAACCGCAA;+!Gamyb#MA0034.1;-3;0.0130905;6.23108;0.883618;10;GCAGGAAACCACAG;GACAACCGCC;+!dl_1#MA0022.1;-1;0.0161719;7.69782;0.883618;12;GCAGGAAACCACAG;CGGAAAAACCCC;-!Gfi#MA0038.1;-4;0.0169461;8.06634;0.883618;10;GCAGGAAACCACAG;CAAATCACTG;+!GCR1#MA0304.1;-2;0.0180009;8.56844;0.883618;8;GCAGGAAACCACAG;TGGAAGCC;+!SPI1#MA0080.2;-2;0.018211;8.66842;0.883618;7;GCAGGAAACCACAG;AGGAAGT;+!RELA#MA0107.1;-3;0.0184392;8.77704;0.883618;10;GCAGGAAACCACAG;GGAAATTCCC;-!RUNX1#MA0002.2;-5;0.0185877;8.84776;0.883618;9;GCAGGAAACCACAG;TAACCACAATA;-
}}
}}

Latest revision as of 14:20, 7 September 2012

Full Name: GCAGGAAACCACAG,motif220,CNhs12575,T:1323.0(26.20%),B:13935.0(18.59%),P:1e-39

Motif matrix
POACGT
1451.14387.318711.77472.765
2108.486804.384354.56455.566
3968.436220.94158.21275.411
499.22555.5661092.79875.411
5153.46888.6411034.58646.305
61046.49399.225121.71655.566
71086.18378.057129.65429.106
8833.49332.073130.97726.46
992.611055.75495.25679.38
10488.187706.48247.62880.703
11791.15485.995358.53387.318
1278.0571062.369129.65452.92
13830.844295.02972.765124.362
1499.22592.61783.216347.949

Sample specificity

The values shown are the p-values of the motif in FANTOM5 samples. <br>Analyst: Michiel de Hoon


TomTom analysis

<br>Analyst: Michiel de Hoon and Hiroko Ohmiya


Target_ID

Optimal_offset

p-value

E-value

q-value

Overlap

Query
consensus
Target
consensus

Orientation
FEV#MA0156.1-10.001580970.7525410.7288248GCAGGAAACCACAGCAGGAAAT+
RUNX1#MA0002.2-50.001615850.7691460.7288249GCAGGAAACCACAGAAACCACAGAC-
REL#MA0101.1-30.003225721.535440.72882410GCAGGAAACCACAGGGAAATCCCC-
ETS1#MA0098.1-20.003777031.797870.7288246GCAGGAAACCACAGCGGAAA-
Eip74EF#MA0026.1-10.003909361.860860.7288247GCAGGAAACCACAGCCGGAAG+
SPIB#MA0081.100.004668482.22220.7288247GCAGGAAACCACAGAGAGGAA+
GCR2#MA0305.1-20.006217792.959670.7288247GCAGGAAACCACAGAGGAAGC-
En1#MA0027.1-30.006551023.118280.72882411GCAGGAAACCACAGGAACACTACTT-
che-1#MA0260.1-40.007307513.478380.7288246GCAGGAAACCACAGGAAACC+
ELF5#MA0136.1-10.007665753.64890.7288249GCAGGAAACCACAGAAGGAAGTA-
Su(H)#MA0085.120.009736774.63470.83335114GCAGGAAACCACAGCTGTGGGAAACGAGAT+
Tal1::Gata1#MA0140.1-10.01051825.006660.83335113GCAGGAAACCACAGCTGGTGGGGACAGATAAG+
run::Bgb#MA0242.1-50.01292656.153020.8836189GCAGGAAACCACAGTAACCGCAA+
Gamyb#MA0034.1-30.01309056.231080.88361810GCAGGAAACCACAGGACAACCGCC+
dl_1#MA0022.1-10.01617197.697820.88361812GCAGGAAACCACAGCGGAAAAACCCC-
Gfi#MA0038.1-40.01694618.066340.88361810GCAGGAAACCACAGCAAATCACTG+
GCR1#MA0304.1-20.01800098.568440.8836188GCAGGAAACCACAGTGGAAGCC+
SPI1#MA0080.2-20.0182118.668420.8836187GCAGGAAACCACAGAGGAAGT+
RELA#MA0107.1-30.01843928.777040.88361810GCAGGAAACCACAGGGAAATTCCC-
RUNX1#MA0002.2-50.01858778.847760.8836189GCAGGAAACCACAGTAACCACAATA-
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MacroAPE_1083:GCAGGAAACCACAG,motif220&oldid=2134327"