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{{MCL_coexpression_mm9
{{MCL_coexpression_mm9
|coexpression_dpi_cluster_scores_mean=0,0.86344742312741,0.795004871207661,1.44038104899581,1.45209536304377,0.287041396705586,0.314905522836535,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138183171563014,0,0,0.707342275795922,0.594245374102192,0.789298714449513,0.72773258435491,0.645666713819869,0.597785876075316,0.782863629777925,0.210514754054144,0,0,0,0.151142485657034,0.273301273153767,0.126229032801819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.021667225770632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.055272043172713,0.814748265362026,0.82845099131014,1.17892005818157,1.10882042988447,1.10680895510497,0.68747516503838,0,0,0,0.0962354859508688,0,0,0,0,0,0,0.906393883583924,0,0.01502727985275,0,0,0,0.015242664488445,0,0.0570680856024937,0.0239835874659785,0.027579965892407,0,0.0162797450211269,0.0807721458171777,0.0429224923441682,0,0,0,1.01828173166994,0,0,0,0,0,0,0.0323941693716807,0,0.0204976815938839,0,0,0.034435102093494,0.0444162606775665,0.0531351607272725,0,0,0,0,0,0,0.00972472422872995,0,0,0,0,0,0,0,0,0,0,0,0,0.0204381305882245,0,0,0,0,0,0.0414644374613452,0,0,0,0,0.0236358118013484,0.0148150998392991,0,0.0258151572106105,0,0,1.36911842883573,0.86335644967018,0,0,0.0512187574776633,0.289003695359023,0.457188287454401,0.564476967821715,1.08576384278805,0.759340396946798,0.565012848234064,0.560394082077933,0.529706812431958,1.16858778669156,1.02341518398477,1.32863803290334,0.0188564359547338,0,0,0.020125174819497,0.0192467611431688,0.043365823667904,0.095483046433327,0.186324900078415,0.276069383955247,0.304837710978391,0.962514916203779,0,0,0,0,0,0,0.027453348248692,0.229646655032138,0.446263575586058,0.340566659859816,0.656207959702951,0.548262415744722,0.833214020656396,1.00525343756418,1.28158732325954,0.0341410149775518,0,0,0,0.0228895045139265,0,0.0231839884452437,0.0357745766632048,0.0420437159807468,0.021720229204289,0,0.043412361703945,0.0172953408354887,0.0146680888560183,0,0,0,0,0.0161660191737831,0.0228660340700171,0,0.075792732504386,0,0,0,0,0.0218387397839143,0.027063140303404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295101121295664,0,0,0,0,0,0.0318118128455325,0,0,0,0.017725496390744,0.0584694602228802,0.074565537085572,0,0,0,0.0216369721519619,0.0165708800247103,0,0,0,0,1.06948800271728,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0323698109147693,0,0.179209356012631,0.091842785375897,0.153734421940846,0.123492182876457,0.0756966076653469,0,0,0,0,0,0,0.0169495527659021,0,0.0132892469734015,0,0,0.0274814951426755,0,0,0,0,0,0,0,0,0,0,0,0,0.0099736222882861,0.0120013273770926,0.0932455874023237,0,0,0,0.035470507561953,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0236271032876169,0,0.0183235742647052,0.0399288946444235,0.057804048426592,0.0302190639983633,0.0244615276944339,0.049058583180754,0.0882681511365434,0.0463183774228155,0.0796660397730431,0.0523901862871344,0.042293190966546,0.108282549113674,0.03830369771457,0.074930558382725,0.0149096823799433,0.0767995204608365,0.068456942695514,0,0.0392915775567797,0.0472133879684374,0.123693375427802,0.0520907998199518,0.088522106876805,0.0399141916550041,0.048360620861752,0.0231161238672399,0.0708202969090502,0.074491100723522,0.0762260304296481,0,0,0.083342793826387,0.0884806702076186,0,0.0216425781243506,0.0226410289579719
|coexpression_dpi_cluster_scores_mean=0,0.86344742312741,0.795004871207661,1.44038104899581,1.45209536304377,0.287041396705586,0.314905522836535,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138183171563014,0,0,0.707342275795922,0.594245374102192,0.789298714449513,0.72773258435491,0.645666713819869,0.597785876075316,0.782863629777925,0.210514754054144,0,0,0,0.151142485657034,0.273301273153767,0.126229032801819,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.021667225770632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.055272043172713,0.814748265362026,0.82845099131014,1.17892005818157,1.10882042988447,1.10680895510497,0.68747516503838,0,0,0,0.0962354859508688,0,0,0,0,0,0,0.906393883583924,0,0.01502727985275,0,0,0,0.015242664488445,0,0.0570680856024937,0.0239835874659785,0.027579965892407,0,0.0162797450211269,0.0807721458171777,0.0429224923441682,0,0,0,1.01828173166994,0,0,0,0,0,0,0.0323941693716807,0,0.0204976815938839,0,0,0.034435102093494,0.0444162606775665,0.0531351607272725,0,0,0,0,0,0,0.00972472422872995,0,0,0,0,0,0,0,0,0,0,0,0,0.0204381305882245,0,0,0,0,0,0.0414644374613452,0,0,0,0,0.0236358118013484,0.0148150998392991,0,0.0258151572106105,0,0,1.36911842883573,0.86335644967018,0,0,0.0512187574776633,0.289003695359023,0.457188287454401,0.564476967821715,1.08576384278805,0.759340396946798,0.565012848234064,0.560394082077933,0.529706812431958,1.16858778669156,1.02341518398477,1.32863803290334,0.0188564359547338,0,0,0.020125174819497,0.0192467611431688,0.043365823667904,0.095483046433327,0.186324900078415,0.276069383955247,0.304837710978391,0.962514916203779,0,0,0,0,0,0,0.027453348248692,0.229646655032138,0.446263575586058,0.340566659859816,0.656207959702951,0.548262415744722,0.833214020656396,1.00525343756418,1.28158732325954,0.0341410149775518,0,0,0,0.0228895045139265,0,0.0231839884452437,0.0357745766632048,0.0420437159807468,0.021720229204289,0,0.043412361703945,0.0172953408354887,0.0146680888560183,0,0,0,0,0.0161660191737831,0.0228660340700171,0,0.075792732504386,0,0,0,0,0.0218387397839143,0.027063140303404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.295101121295664,0,0,0,0,0,0.0318118128455325,0,0,0,0.017725496390744,0.0584694602228802,0.074565537085572,0,0,0,0.0216369721519619,0.0165708800247103,0,0,0,0,1.06948800271728,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0323698109147693,0,0.179209356012631,0.091842785375897,0.153734421940846,0.123492182876457,0.0756966076653469,0,0,0,0,0,0,0.0169495527659021,0,0.0132892469734015,0,0,0.0274814951426755,0,0,0,0,0,0,0,0,0,0,0,0,0.0099736222882861,0.0120013273770926,0.0932455874023237,0,0,0,0.035470507561953,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0236271032876169,0,0.0183235742647052,0.0399288946444235,0.057804048426592,0.0302190639983633,0.0244615276944339,0.049058583180754,0.0882681511365434,0.0463183774228155,0.0796660397730431,0.0523901862871344,0.042293190966546,0.108282549113674,0.03830369771457,0.074930558382725,0.0149096823799433,0.0767995204608365,0.068456942695514,0,0.0392915775567797,0.0472133879684374,0.123693375427802,0.0520907998199518,0.088522106876805,0.0399141916550041,0.048360620861752,0.0231161238672399,0.0708202969090502,0.074491100723522,0.0762260304296481,0,0,0.083342793826387,0.0884806702076186,0,0.0216425781243506,0.0226410289579719
|coexpression_dpi_cluster_scores_median=0,0.987862153277594,0.835229234611615,1.48165607723561,1.53190405294496,0.200127030070178,0.198579865921535,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123634821996772,0,0,0.65334677098817,0.612298370865799,0.962372630502081,0.780481086458864,0.716051215778738,0.550705703809258,0.855739060589683,0.217579509345692,0,0,0,0.135520379322723,0.245995116589093,0.148707117369847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.055272043172713,0.886111464781826,0.868625052211075,1.11861358591196,1.26200366618541,1.21107166276001,0.774579819075525,0,0,0,0.0286130208973782,0,0,0,0,0,0,0.979131673762234,0,0,0,0,0,0,0,0.0257048884249574,0,0,0,0,0,0,0,0,0,1.1376557868403,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.57079929167798,0.779231525201916,0,0,0.0526429550379996,0.298336540569327,0.508365455708352,0.539557862000054,1.23435193653249,0.736841276070147,0.47252557760333,0.578110700321293,0.38824362794239,1.28271552759059,1.15667297135193,1.42530695965681,0,0,0,0,0,0,0.0391753538423105,0.159215297421721,0.289293740739306,0.31761531183168,1.04160052447775,0,0,0,0,0,0,0,0.233611458253909,0.400705427369634,0.386977062110387,0.674996694722349,0.514005741353501,0.948599779635322,1.06806059846059,1.12039968106135,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224275719026059,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15492151106294,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0222709268946923,0,0.179209356012631,0.054943952156948,0.14343473610188,0.091422923116439,0.0264652202067783,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.040679966067952,0,0,0.049058583180754,0.107029488765471,0.0388749848471105,0.0990244263857601,0.0581328665260699,0,0.110053611258545,0.03830369771457,0.074930558382725,0,0,0.0709519923534245,0,0,0.0569785733435272,0.112424166433421,0.0364791508700876,0.0507136604151505,0.0276517186754466,0,0,0.0408018333703219,0.074491100723522,0.0625582350728301,0,0,0.083342793826387,0.0422650922646472,0,0,0
|gostat_on_MCL_coexpression=GO:0006855;multidrug transport;0.00588879748364596;67473!GO:0030300;regulation of cholesterol absorption;0.00588879748364596;11808!GO:0030299;cholesterol absorption;0.00588879748364596;11808!GO:0044241;lipid digestion;0.00588879748364596;11808!GO:0042627;chylomicron;0.00659509178698858;11808!GO:0050892;intestinal absorption;0.00706578256317182;11808!GO:0015893;drug transport;0.00732647433950719;67473!GO:0022600;digestive system process;0.00732647433950719;11808!GO:0015238;drug transporter activity;0.00732647433950719;67473!GO:0042493;response to drug;0.0141234337457087;67473!GO:0015297;antiporter activity;0.0156884018441022;67473!GO:0007586;digestion;0.0156884018441022;11808!GO:0005319;lipid transporter activity;0.0166511017120968;11808!GO:0042157;lipoprotein metabolic process;0.0191533287968437;11808!GO:0006869;lipid transport;0.0231971854661205;11808!GO:0006810;transport;0.0408473186988738;11808,67473!GO:0051234;establishment of localization;0.0408473186988738;11808,67473!GO:0015291;secondary active transmembrane transporter activity;0.0458476782780808;67473!GO:0051179;localization;0.04657740421181;11808,67473!
|gostat_on_MCL_coexpression=GO:0006855;multidrug transport;0.00588879748364596;67473!GO:0030300;regulation of cholesterol absorption;0.00588879748364596;11808!GO:0030299;cholesterol absorption;0.00588879748364596;11808!GO:0044241;lipid digestion;0.00588879748364596;11808!GO:0042627;chylomicron;0.00659509178698858;11808!GO:0050892;intestinal absorption;0.00706578256317182;11808!GO:0015893;drug transport;0.00732647433950719;67473!GO:0022600;digestive system process;0.00732647433950719;11808!GO:0015238;drug transporter activity;0.00732647433950719;67473!GO:0042493;response to drug;0.0141234337457087;67473!GO:0015297;antiporter activity;0.0156884018441022;67473!GO:0007586;digestion;0.0156884018441022;11808!GO:0005319;lipid transporter activity;0.0166511017120968;11808!GO:0042157;lipoprotein metabolic process;0.0191533287968437;11808!GO:0006869;lipid transport;0.0231971854661205;11808!GO:0006810;transport;0.0408473186988738;11808,67473!GO:0051234;establishment of localization;0.0408473186988738;11808,67473!GO:0015291;secondary active transmembrane transporter activity;0.0458476782780808;67473!GO:0051179;localization;0.04657740421181;11808,67473!
}}
}}

Revision as of 13:05, 11 October 2012


Phase1 CAGE Peaks

 Short description
Mm9::chr11:61191808..61191849,-p2@Slc47a1
Mm9::chr13:93616609..93616624,+p@chr13:93616609..93616624
+
Mm9::chr9:46048823..46048828,+p4@Apoa4
Mm9::chr9:46048865..46048876,+p3@Apoa4


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

GO IDGO nameFDR corrected p-value
GO:0006855multidrug transport0.00588879748364596
GO:0030300regulation of cholesterol absorption0.00588879748364596
GO:0030299cholesterol absorption0.00588879748364596
GO:0044241lipid digestion0.00588879748364596
GO:0042627chylomicron0.00659509178698858
GO:0050892intestinal absorption0.00706578256317182
GO:0015893drug transport0.00732647433950719
GO:0022600digestive system process0.00732647433950719
GO:0015238drug transporter activity0.00732647433950719
GO:0042493response to drug0.0141234337457087
GO:0015297antiporter activity0.0156884018441022
GO:0007586digestion0.0156884018441022
GO:0005319lipid transporter activity0.0166511017120968
GO:0042157lipoprotein metabolic process0.0191533287968437
GO:0006869lipid transport0.0231971854661205
GO:0006810transport0.0408473186988738
GO:0051234establishment of localization0.0408473186988738
GO:0015291secondary active transmembrane transporter activity0.0458476782780808
GO:0051179localization0.04657740421181



Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br>disease_data<br>

Cell Type
Ontology termp-valuen

Uber Anatomy
Ontology termp-valuen

Disease
Ontology termp-valuen


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)

{{{tfbs_overrepresentation_jaspar}}}

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