NonredundantMotifs:9: Difference between revisions
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|entrez_gene_id=3216
|motif_cluster_2013_march_motif_members= /SWISSREGULON:CUX2.p2~PBX1.p2~ONECUT1,2.p2 /HOMER:ONECUT1_Liver-Hnf6-ChIP-Seq(ERP000394)~PDX1_I...") |
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{{Known_motif | {{Known_motif | ||
|entrez_gene_id=3216 | |entrez_gene_id=3216 | ||
|motif_cluster_2013_march_motif_members= /SWISSREGULON:CUX2.p2~PBX1.p2~ONECUT1,2.p2 /HOMER:ONECUT1_Liver-Hnf6-ChIP-Seq(ERP000394)~PDX1_Islet-Pdx1-ChIP-Seq~HOXA2_mES-Hoxa2-ChIP-Seq~HOXB4_ES-Hoxb4-ChIP-Seq(GSE34014)~HOXC9_Ainv15-Hoxc9-ChIP-Seq~HOXA9_HSC-Hoxa9-ChIP-Seq(GSE33509) | |motif_cluster_2013_march_motif_members= /JASPAR:MA0070.1;PBX1 /HOCOMOCO:PBX2_f1~ONEC2_si~HNF6_f1~PKNX1_si~HXB6_f1~CUX1_f1~HXB7_si~HXB8_do~PBX1_do~HXB1_f1~HXA1_f1 /SWISSREGULON:CUX2.p2~PBX1.p2~ONECUT1,2.p2 /HOMER:ONECUT1_Liver-Hnf6-ChIP-Seq(ERP000394)~PDX1_Islet-Pdx1-ChIP-Seq~HOXA2_mES-Hoxa2-ChIP-Seq~HOXB4_ES-Hoxb4-ChIP-Seq(GSE34014)~HOXC9_Ainv15-Hoxc9-ChIP-Seq~HOXA9_HSC-Hoxa9-ChIP-Seq(GSE33509) /UNIPROBE:Pbx1_3203.1;CELL08~Lef1_secondary;SCI09~Tcf7l2_secondary;SCI09 | ||
|name=known9 | |name=known9 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 16:20, 1 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known9
- db :HOCOMOCO
- Id :HXB6_f1
- name :
- score :0.272361452579038
- External refs:
- Internal refs:
| Motif matrix | |
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Sub Motif Members
