NonredundantMotifs:16: Difference between revisions
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|PWM=P0;A;C;G;T!1;505.45833122858005;207.5093476383388;553.0507895440471;49.929503434375135!2;9.819745251908197;10.888348573428175;1.9247433481129423;1293.3151346718905!3;11.974852988139208;2.4798384244303757;485.2814003005542;816.2118801322162!4;418.26596339271595;18.828238834951268;610.4346480460513;268.41912157162176!5;182.94319712755836;303.4928073738461;186.79100670994978;642.720960633987!6;5.533637125824698;11.934230264479785;1294.0773253468649;4.402779108170397!7;159.0991741312945;1043.1892806042774;12.87743293575687;100.78208417400876!8;1295.0363877500922;16.461810162843477;0.0;4.449773932404013!9;1306.0570841259712;5.023859759905976;4.8670279594630435;0.0!10;72.58169560641501;356.98371372799676;215.90862125703686;670.4739412538929 | |PWM=P0;A;C;G;T!1;505.45833122858005;207.5093476383388;553.0507895440471;49.929503434375135!2;9.819745251908197;10.888348573428175;1.9247433481129423;1293.3151346718905!3;11.974852988139208;2.4798384244303757;485.2814003005542;816.2118801322162!4;418.26596339271595;18.828238834951268;610.4346480460513;268.41912157162176!5;182.94319712755836;303.4928073738461;186.79100670994978;642.720960633987!6;5.533637125824698;11.934230264479785;1294.0773253468649;4.402779108170397!7;159.0991741312945;1043.1892806042774;12.87743293575687;100.78208417400876!8;1295.0363877500922;16.461810162843477;0.0;4.449773932404013!9;1306.0570841259712;5.023859759905976;4.8670279594630435;0.0!10;72.58169560641501;356.98371372799676;215.90862125703686;670.4739412538929 | ||
|entrez_gene_id=1051 | |entrez_gene_id=1051 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /JASPAR:MA0102.2;CEBPA~MA0019.1;Ddit3::Cebpa~MA0043.1;HLF~MA0025.1;NFIL3 /SWISSREGULON:CEBPA,B_DDIT3.p2~HLF.p2~NFIL3.p2~ATF2.p2 /HOMER:CEBPB_CEBPb-ChIP-Seq~CEBPB_ThioMac-CEBPb-ChIP-Seq /HOCOMOCO:HLF_si~CEBPE_f1~CEBPA_do~NFIL3_si~CEBPD_f1~CEBPG_si~DBP_si~DDIT3_f1~CEBPB_f1 | ||
|name=known16 | |name=known16 | ||
|representative_motif_db=HOCOMOCO | |representative_motif_db=HOCOMOCO | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known16
- db :HOCOMOCO
- Id :CEBPB_f1
- name :
- score :0.6507758725357089
- External refs:
- Internal refs:
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Sub Motif Members
