NonredundantMotifs:17: Difference between revisions
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|PWM=P0;A;C;G;T!1;1423;560;1242;775!2;708;1633;1235;424!3;2782;31;10;1177!4;0;0;4000;0!5;4000;0;0;0!6;27;29;109;3835!7;3887;0;6;107!8;3550;4;383;63!9;799;681;2296;224!10;1432;897;1360;311!11;1487;829;1099;585 | |PWM=P0;A;C;G;T!1;1423;560;1242;775!2;708;1633;1235;424!3;2782;31;10;1177!4;0;0;4000;0!5;4000;0;0;0!6;27;29;109;3835!7;3887;0;6;107!8;3550;4;383;63!9;799;681;2296;224!10;1432;897;1360;311!11;1487;829;1099;585 | ||
|entrez_gene_id=2623 | |entrez_gene_id=2623 | ||
|motif_cluster_2013_march_motif_members= | |motif_cluster_2013_march_motif_members= /JASPAR:MA0035.2;Gata1~MA0140.1;Tal1::Gata1~MA0037.1;GATA3 /SWISSREGULON:GATA1..3.p2~GATA6.p2 /HOMER:GATA1_K562-GATA1-ChIP-Seq~GATA3_iTreg-Gata3-ChIP-Seq(GSE20898)~GATA2_K562-GATA2-ChIP-Seq /UNIPROBE:Gata3_primary;SCI09~Gata5_primary;SCI09~Gata6_primary;SCI09 /HOCOMOCO:GATA4_f1~GATA2_si~GATA3_si~GATA6_f2~GATA5_f1~GATA1_si | ||
|name=known17 | |name=known17 | ||
|representative_motif_db=JASPAR | |representative_motif_db=JASPAR | ||
Revision as of 12:09, 13 May 2013
Representative Motif
<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.
- Name :known17
- db :JASPAR
- Id :MA0035.2
- name :Gata1
- score :0.20747286391586373
- External refs:
- Internal refs:
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Sub Motif Members
