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NonredundantMotifs:34: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;73.016397;93.5101009999999;20.999693;64.699776!2;146.51906;17.547087;55.544849;32.614971!3;52.666958;51.997261;108.529854;39.031894!4;109.240729;9.205907;5.558978;128.220353!5;2.713685;0;249.512282;0!6;1.7142;0;250.511767;0!7;251.308668;0;0.917299;0!8;249.568094;0;2.657873;0!9;249.673431;0.84565;1.706886;0!10;157.183663;50.194764;10.824947;34.022593!11;72.111846;44.741669;23.799103;111.573349!12;34.464015;71.735108;29.634182;116.392662
|PWM=P0;A;C;G;T!1;73.016397;93.5101009999999;20.999693;64.699776!2;146.51906;17.547087;55.544849;32.614971!3;52.666958;51.997261;108.529854;39.031894!4;109.240729;9.205907;5.558978;128.220353!5;2.713685;0;249.512282;0!6;1.7142;0;250.511767;0!7;251.308668;0;0.917299;0!8;249.568094;0;2.657873;0!9;249.673431;0.84565;1.706886;0!10;157.183663;50.194764;10.824947;34.022593!11;72.111846;44.741669;23.799103;111.573349!12;34.464015;71.735108;29.634182;116.392662
|entrez_gene_id=
|entrez_gene_id=NFATC1
|motif_cluster_2013_march_motif_members= /SWISSREGULON:IKZF2.p2~NFATC1..3.p2 /JASPAR:MA0152.1;NFATC2 /HOMER:NFATC1_motifB;Jurkat-NFATC1-ChIP-Seq~NFATC1_motifA;Jurkat-NFATC1-ChIP-Seq /HOCOMOCO:NFAC2_f1~NFAC3_f1~NFAC4_f1~NFAC1_si~NFAT5_f1~NFAC1_do
|motif_cluster_2013_march_motif_members= /JASPAR:MA0152.1;NFATC2 /SWISSREGULON:IKZF2.p2~NFATC1..3.p2 /HOMER:NFATC1_motifB;Jurkat-NFATC1-ChIP-Seq~NFATC1_motifA;Jurkat-NFATC1-ChIP-Seq /HOCOMOCO:NFAC2_f1~NFAC3_f1~NFAC4_f1~NFAC1_si~NFAT5_f1~NFAC1_do
|name=known34
|name=known34
|representative_motif_db=SWISSREGULON
|representative_motif_db=SWISSREGULON
|representative_motif_id=NFATC1..3.p2
|representative_motif_id=NFATC1..3.p2
|representative_motif_name=  
|representative_motif_name=NFATC1
|score=0.1729565267707871
|score=0.1729565267707871
|uniprot_entry_name=
|uniprot_entry_name=NFATC1
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]

Revision as of 12:09, 13 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :known34
  • db :SWISSREGULON
  • Id :NFATC1..3.p2
  • name :NFATC1
  • score :0.1729565267707871
  • External refs:
EntrezGene:NFATC1
UniProt:NFATC1

  • Internal refs:
EntrezGene:NFATC1


Motif matrix
P0ACGT
173.01639793.510100999999920.99969364.699776
2146.5190617.54708755.54484932.614971
352.66695851.997261108.52985439.031894
4109.2407299.2059075.558978128.220353
52.7136850249.5122820
61.71420250.5117670
7251.30866800.9172990
8249.56809402.6578730
9249.6734310.845651.7068860
10157.18366350.19476410.82494734.022593
1172.11184644.74166923.799103111.573349
1234.46401571.73510829.634182116.392662

Sub Motif Members