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NonredundantMotifs:84: Difference between revisions

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{{Known_motif
{{Known_motif
|PWM=P0;A;C;G;T!1;31.289792;225.66971;9.910344;10.746371!2;8.774075;260.087714;0.967478;7.78695!3;22.60165;247.211811;2.938054;4.864702!4;2.937916;252.305408;11.698205;10.674688!5;133.572578;138.152575;0.975621;4.915443!6;182.542949;85.266814;2.936991;6.869463!7;118.912106;152.846543;3.915805;1.941763!8;71.129964;190.927166;1.928579;13.630508!9;0.957928;272.766358;0.973771;2.91816!10;247.48044;6.758236;9.728949;13.648592!11;32.130469;234.68241;7.865718;2.93762!12;31.992572;241.719698;0;3.903947!13;26.32765;239.596153;0;11.692414!14;72.98442;190.957257;7.82806;5.84648!15;18.437261;252.376801;3.853395;2.94876!16;108.303846;101.04052;7.804664;60.467187!17;42.821348;182.893527;25.382002;26.51934!18;80.859677;181.202079;5.810111;9.74435!19;7.699796;221.944316;46.997056;0.975049!20;56.522138;157.763428;51.683117;11.647534
|PWM=P0;A;C;G;T!1;6.822545901012192;3.088727049493904;10.103514891076204;5.985212158417674!2;2.059151366329265;4.11830273265853;10.748606693100614;9.073939207911577!3;0.0;7.014787841582326;16.088727049493905;2.896485108923796!4;2.059151366329265;0.0;14.866909425759145;9.073939207911577!5;2.059151366329265;2.896485108923796;11.970424316835373;9.073939207911577!6;4.11830273265853;0.8373337425945206;11.133090574240857;9.911272950506095!7;0.0;0.8373337425945206;20.207029782152436;4.955636475253048!8;0.0;3.7338188515183144;13.192241940570106;9.073939207911577!9;0.0;0.8373337425945206;17.310544673228637;7.852121584176844!10;0.0;0.8373337425945206;23.103514891076205;2.059151366329265!11;0.0;2.5120012277835615;15.251393306899386;8.23660546531706!12;0.0;0.0;1.6746674851890413;24.325332514810967!13;0.8373337425945206;0.0;24.325332514810967;0.8373337425945206!14;2.059151366329265;2.5120012277835615;12.35490819797559;9.073939207911577!15;0.0;0.8373337425945206;6.177454098987808;18.985212158417674!16;1.6746674851890413;0.8373337425945206;4.11830273265853;19.369696039557915!17;0.0;0.8373337425945206;8.23660546531706;16.92606079208842!18;0.0;1.6746674851890413;24.325332514810967;0.0!19;1.6746674851890413;0.0;17.310544673228637;7.014787841582326!20;0.0;0.8373337425945206;22.266181148481685;2.896485108923796!21;0.0;0.0;17.310544673228637;8.689455326771363!22;3.926060792088422;3.5415769109482063;5.147878415823156;13.384483881140218
|entrez_gene_id=RREB1
|entrez_gene_id=6239
|motif_cluster_2013_march_motif_members= /JASPAR:MA0073.1;RREB1 /SWISSREGULON:RREB1.p2 /HOCOMOCO:RREB1_si
|motif_cluster_2013_march_motif_members= /HOCOMOCO:RREB1_si /JASPAR:MA0073.1;RREB1 /SWISSREGULON:RREB1.p2
|name=known84
|name=non-redundant84
|representative_motif_db=SWISSREGULON
|representative_motif_db=HOCOMOCO
|representative_motif_id=RREB1.p2
|representative_motif_id=RREB1_si
|representative_motif_name=RREB1
|representative_motif_name=  
|score=1.265724185079713
|score=0.9143172944708631
|uniprot_entry_name=RREB1
|uniprot_entry_name=RREB1_HUMAN
}}
}}
[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant84
  • db :HOCOMOCO
  • Id :RREB1_si
  • name  :
  • score :0.9143172944708631
  • External refs:
EntrezGene:6239
UniProt:6239

  • Internal refs:
EntrezGene:6239


Motif matrix
P0ACGT
16.8225459010121923.08872704949390410.1035148910762045.985212158417674
22.0591513663292654.1183027326585310.7486066931006149.073939207911577
30.07.01478784158232616.0887270494939052.896485108923796
42.0591513663292650.014.8669094257591459.073939207911577
52.0591513663292652.89648510892379611.9704243168353739.073939207911577
64.118302732658530.837333742594520611.1330905742408579.911272950506095
70.00.837333742594520620.2070297821524364.955636475253048
80.03.733818851518314413.1922419405701069.073939207911577
90.00.837333742594520617.3105446732286377.852121584176844
100.00.837333742594520623.1035148910762052.059151366329265
110.02.512001227783561515.2513933068993868.23660546531706
120.00.01.674667485189041324.325332514810967
130.83733374259452060.024.3253325148109670.8373337425945206
142.0591513663292652.512001227783561512.354908197975599.073939207911577
150.00.83733374259452066.17745409898780818.985212158417674
161.67466748518904130.83733374259452064.1183027326585319.369696039557915
170.00.83733374259452068.2366054653170616.92606079208842
180.01.674667485189041324.3253325148109670.0
191.67466748518904130.017.3105446732286377.014787841582326
200.00.837333742594520622.2661811484816852.896485108923796
210.00.017.3105446732286378.689455326771363
223.9260607920884223.54157691094820635.14787841582315613.384483881140218

Sub Motif Members

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