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NonredundantMotifs:111: Difference between revisions

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|PWM=PO;A;C;G;T!1;163;29;603;84!2;7;470;376;26!3;1;868;9;1!4;19;1;1;858!5;1;1;876;1!6;3;65;1;810!7;1;875;2;1!8;862;2;1;14!9;250;435;190;4!10;1;14;12;852!11;2;873;3;1!12;860;2;1;16
|PWM=PO;A;C;G;T!1;163;29;603;84!2;7;470;376;26!3;1;868;9;1!4;19;1;1;858!5;1;1;876;1!6;3;65;1;810!7;1;875;2;1!8;862;2;1;14!9;250;435;190;4!10;1;14;12;852!11;2;873;3;1!12;860;2;1;16
|entrez_gene_id=5087
|entrez_gene_id=5087
|motif_cluster_2013_march_motif_members= /HOMER:PBX1_MCF7-PBX1-ChIP-Seq(GSE28007)~PBX3_GM12878-PBX3-ChIP-Seq
|motif_cluster_2013_march_motif_members= /HOMER:PBX3_GM12878-PBX3-ChIP-Seq~PBX1_MCF7-PBX1-ChIP-Seq(GSE28007)
|name=known111
|name=non-redundant111
|representative_motif_db=HOMER
|representative_motif_db=HOMER
|representative_motif_id=PBX1_MCF7-PBX1-ChIP-Seq(GSE28007)
|representative_motif_id=PBX1_MCF7-PBX1-ChIP-Seq(GSE28007)
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[[Category:Motif]]
[[Category:Motif]]
[[Category:MotifCluster2013March]]
[[Category:MotifCluster2013March]]
[[Category:NonRedundantMotifCluster]]

Revision as of 16:47, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant111
  • db :HOMER
  • Id :PBX1_MCF7-PBX1-ChIP-Seq(GSE28007)
  • name  :
  • score :0.0635317205896486
  • External refs:
EntrezGene:5087
UniProt:5087

  • Internal refs:
EntrezGene:5087


Motif matrix
POACGT
11632960384
2747037626
3186891
41911858
5118761
63651810
7187521
88622114
92504351904
1011412852
11287331
128602116

Sub Motif Members