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NonredundantMotifs:2: Difference between revisions

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Revision as of 17:22, 29 May 2013

Representative Motif

<br>Analyst: Ivan Kulakovskiy,Ilya Vorontsov, Vsevolod Makeev, Michiel de Hoon <br>May 2013, Collection Name: Non-redundant known motifs<br>Analysis information: 208 clusters of known motifs were produced by MACRO-APE [1] using the general phase1 motif clustering procedure applied for known motif collections.<br>207 of 208 clusters had at least one member passing motif-promoter correlation procedure.For these clusters representative motifs were selected based on motif-promoter correlation values.For each cluster only motifs with an average distance to of ther members not greater than mean+SD were considered as representatives.

  • Name :non-redundant2
  • db :JASPAR
  • Id :MA0080.2
  • name :SPI1
  • score :2.115836116731318
  • External refs:
EntrezGene:6688
UniProt:6688

  • Internal refs:
EntrezGene:6688


Motif matrix
P0ACGT
133360
240371
340380
442000
541010
653331
735232

Sub Motif Members