FFCP PHASE1:Hg19::chr1:1142084..1142097,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=8784|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding|HGNC=11914|TSSclassifier=S|UniProt=Q5U0I4,Q9Y5U5,B1AME3|association_with_transcript=0bp_to_NM_004195,NM_148901,NM_148902,uc001adb.2,uc001adc.2,uc001add.2_5end|coexpression_cluster_id=C99|description=CAGE_peak_3_at_TNFRSF18_5end|id=chr1:1142084..1142097,-|ontology_enrichment_celltype=CL:0000542!1.70e-27!53;CL:0000051!1.70e-27!53;CL:0000838!4.83e-26!52;CL:0000738!1.63e-23!140;CL:0000988!1.26e-21!182;CL:0000945!4.45e-21!24;CL:0000826!4.45e-21!24;CL:0002087!4.97e-21!119;CL:0000037!2.76e-20!172;CL:0000566!2.76e-20!172;CL:0000236!1.79e-19!14;CL:0002031!1.30e-18!124;CL:0002032!7.77e-18!165;CL:0000837!7.77e-18!165;CL:0000080!6.74e-12!6;CL:0000623!9.79e-07!3;CL:0000825!9.79e-07!3|ontology_enrichment_celltype_v019=CL:0000236;2.41e-30;13!CL:0000945;4.45e-30;24!CL:0000542;2.05e-18;53!CL:0000946;1.14e-07;1!CL:0000786;1.14e-07;1|ontology_enrichment_celltype_v019_2=CL:0000236,1.38e-35,14;CL:0000945,4.41e-30,24;CL:0000826,4.41e-30,24;CL:0000542,1.12e-27,53;CL:0000051,1.12e-27,53;CL:0000838,1.07e-24,52;CL:0000988,1.19e-14,177;CL:0002087,3.58e-14,115;CL:0002031,1.83e-13,120;CL:0000738,5.33e-13,136;CL:0002032,9.53e-12,161;CL:0000837,9.53e-12,161;CL:0000037,4.27e-11,168;CL:0000946,1.87e-07,1;CL:0000786,1.87e-07,1;CL:0000980,1.87e-07,1|ontology_enrichment_development_v019=CL:0000051;2.05e-18;53|ontology_enrichment_disease=|ontology_enrichment_disease_v019=DOID:0060060;3.09e-08;1!DOID:0060061;3.09e-08;1!DOID:8691;3.09e-08;1!DOID:12603;1.14e-07;1|ontology_enrichment_disease_v019_2=DOID:0060060,3.10e-08,1;DOID:0060061,3.10e-08,1;DOID:8691,3.10e-08,1;DOID:12603,9.72e-08,1|ontology_enrichment_uberon=|ontology_enrichment_uberon_v019=|ontology_enrichment_uberon_v019_2=|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,1.06978768047132,0.903106483949403,1.25937250101887,0.786728553697808,0,0,0,0,0,0,0,0.293600439334847,0,0.401088894940283,0,0,0,0,0.145398238779565,0,0.242584061187816,0,0.411167888021826,0,0.28769239232215,0.256160706529101,0,0,0,0,0,0,0,0,0.641858054152187,0,0,0.398927315243264,0,0.290209238628584,1.13477044938228,0,0,0,0,0,1.10483290796269,0,0,0,0,0,0,0,0.285012743741249,0,0,3.51992488922645,0.546138611262131,2.66852776159066,0.853460445133014,1.60158394814405,1.72425731986345,1.98313461835459,0.954053754535364,1.70763890732835,1.17447437874188,1.14681968437569,0,1.68152568894461,0,0.196709770113833,0,0.205601498999509,0.668745981562712,0,0,0,1.78256731016278,0.883817722424512,1.77227115666897,0.270803863765016,3.0741916734162,2.9913649938772,4.1109476150919,3.86890024900188,4.05724320029073,0,0,0,0.566546713487831,0,0.34362744548263,0,0,0,0,0,0,1.24930726552346,0,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.75745460055828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0.591092280605782,0.862510299438069,1.02674429023799,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.431428401637234,0.320182673410333,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0,0,0,0,0,0,0,0,1.67222857613147,0,0.0711418433484141,0,1.1974762285969,0.383010740264733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0.615424027305347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0.470940769185074,0,0,0,0,0,0,0,0,0,0,0,0.619202951523374,0,11.5643240185443,6.91958058100416,6.47416086933823,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0.213452994739353,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,40.2217652047351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.0247650239635,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.213574825135389,0,0,0.496166021811951,0,0.852548188666271,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.664324201566815,0.163565394255844,0,0,0,9.79938239689156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,0,0,0,0.0887023701626388,1.03710588800201,0.171488009437418,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0.437119121007915,0,0,0,0,0,0,0,0.281951753939561,0.580120991762195,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.193766729508018,0.186224142887574,0,0,0,0,0,0.336760265072938,0.143444410785353,0.332660356546013,0,0,0,0,0,0,0,0,0.201273793591026,0|short_description=p3@TNFRSF18}} | ||
|DPIdataset=robustDPI | |||
|EntrezGene=8784 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11914 | |||
|TSSclassifier=S | |||
|UniProt=Q5U0I4,Q9Y5U5,B1AME3 | |||
|association_with_transcript=0bp_to_NM_004195,NM_148901,NM_148902,uc001adb.2,uc001adc.2,uc001add.2_5end | |||
|coexpression_cluster_id=C99 | |||
|description=CAGE_peak_3_at_TNFRSF18_5end | |||
|id=chr1:1142084..1142097,- | |||
|ontology_enrichment_celltype=CL:0000542!1.70e-27!53;CL:0000051!1.70e-27!53;CL:0000838!4.83e-26!52;CL:0000738!1.63e-23!140;CL:0000988!1.26e-21!182;CL:0000945!4.45e-21!24;CL:0000826!4.45e-21!24;CL:0002087!4.97e-21!119;CL:0000037!2.76e-20!172;CL:0000566!2.76e-20!172;CL:0000236!1.79e-19!14;CL:0002031!1.30e-18!124;CL:0002032!7.77e-18!165;CL:0000837!7.77e-18!165;CL:0000080!6.74e-12!6;CL:0000623!9.79e-07!3;CL:0000825!9.79e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000236;2.41e-30;13!CL:0000945;4.45e-30;24!CL:0000542;2.05e-18;53!CL:0000946;1.14e-07;1!CL:0000786;1.14e-07;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,1.38e-35,14;CL:0000945,4.41e-30,24;CL:0000826,4.41e-30,24;CL:0000542,1.12e-27,53;CL:0000051,1.12e-27,53;CL:0000838,1.07e-24,52;CL:0000988,1.19e-14,177;CL:0002087,3.58e-14,115;CL:0002031,1.83e-13,120;CL:0000738,5.33e-13,136;CL:0002032,9.53e-12,161;CL:0000837,9.53e-12,161;CL:0000037,4.27e-11,168;CL:0000946,1.87e-07,1;CL:0000786,1.87e-07,1;CL:0000980,1.87e-07,1 | |||
|ontology_enrichment_development_v019=CL:0000051;2.05e-18;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:0060060;3.09e-08;1!DOID:0060061;3.09e-08;1!DOID:8691;3.09e-08;1!DOID:12603;1.14e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060060,3.10e-08,1;DOID:0060061,3.10e-08,1;DOID:8691,3.10e-08,1;DOID:12603,9.72e-08,1 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2= | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,1.06978768047132,0.903106483949403,1.25937250101887,0.786728553697808,0,0,0,0,0,0,0,0.293600439334847,0,0.401088894940283,0,0,0,0,0.145398238779565,0,0.242584061187816,0,0.411167888021826,0,0.28769239232215,0.256160706529101,0,0,0,0,0,0,0,0,0.641858054152187,0,0,0.398927315243264,0,0.290209238628584,1.13477044938228,0,0,0,0,0,1.10483290796269,0,0,0,0,0,0,0,0.285012743741249,0,0,3.51992488922645,0.546138611262131,2.66852776159066,0.853460445133014,1.60158394814405,1.72425731986345,1.98313461835459,0.954053754535364,1.70763890732835,1.17447437874188,1.14681968437569,0,1.68152568894461,0,0.196709770113833,0,0.205601498999509,0.668745981562712,0,0,0,1.78256731016278,0.883817722424512,1.77227115666897,0.270803863765016,3.0741916734162,2.9913649938772,4.1109476150919,3.86890024900188,4.05724320029073,0,0,0,0.566546713487831,0,0.34362744548263,0,0,0,0,0,0,1.24930726552346,0,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0,0,0,0,0.0945348171640679,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.75745460055828,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112085143993527,0.591092280605782,0.862510299438069,1.02674429023799,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0.431428401637234,0.320182673410333,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.764637207142375,0,0,0,0,0,0,0,0,0,1.67222857613147,0,0.0711418433484141,0,1.1974762285969,0.383010740264733,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0,0,0,0,0,0.276283915531148,0,0,0.615424027305347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236387681767936,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0.470940769185074,0,0,0,0,0,0,0,0,0,0,0,0.619202951523374,0,11.5643240185443,6.91958058100416,6.47416086933823,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0.213452994739353,0,0.144090417154106,0,0,0,0,0,0,0,0,0,0,0,0,0,40.2217652047351,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.0247650239635,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0,0,0.213574825135389,0,0,0.496166021811951,0,0.852548188666271,0,0,0,0,0,0.157054096250234,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0.664324201566815,0.163565394255844,0,0,0,9.79938239689156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,0,0,0,0.0887023701626388,1.03710588800201,0.171488009437418,0,0,0,0,0.078493092850514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.223710863595585,0,0,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0.437119121007915,0,0,0,0,0,0,0,0.281951753939561,0.580120991762195,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213233981900981,0,0.193766729508018,0.186224142887574,0,0,0,0,0,0.336760265072938,0.143444410785353,0.332660356546013,0,0,0,0,0,0,0,0,0.201273793591026,0 | |||
|short_description=p3@TNFRSF18 | |||
}} |
Revision as of 23:37, 11 September 2013
Short description: | p3@TNFRSF18 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_TNFRSF18_5end |
Coexpression cluster: | C99_hairy_mycosis_submaxillary_salivary_cord_kidney_parotid |
Association with transcript: | 0bp_to_NM_004195, NM_148901, NM_148902, uc001adb.2, uc001adc.2, uc001add.2_5end |
EntrezGene: | TNFRSF18 |
HGNC: | 11914 |
UniProt: | Q5U0I4Q9Y5U5B1AME3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 1.38e-35 | 14 |
lymphocyte of B lineage | 4.41e-30 | 24 |
pro-B cell | 4.41e-30 | 24 |
lymphocyte | 1.12e-27 | 53 |
common lymphoid progenitor | 1.12e-27 | 53 |
lymphoid lineage restricted progenitor cell | 1.07e-24 | 52 |
hematopoietic cell | 1.19e-14 | 177 |
nongranular leukocyte | 3.58e-14 | 115 |
hematopoietic lineage restricted progenitor cell | 1.83e-13 | 120 |
leukocyte | 5.33e-13 | 136 |
hematopoietic oligopotent progenitor cell | 9.53e-12 | 161 |
hematopoietic multipotent progenitor cell | 9.53e-12 | 161 |
hematopoietic stem cell | 4.27e-11 | 168 |
antibody secreting cell | 1.87e-07 | 1 |
plasma cell | 1.87e-07 | 1 |
plasmablast | 1.87e-07 | 1 |
Ontology term | p-value | n |
---|---|---|
non-Hodgkin lymphoma | 3.10e-08 | 1 |
cutaneous T cell lymphoma | 3.10e-08 | 1 |
mycosis fungoides | 3.10e-08 | 1 |
acute leukemia | 9.72e-08 | 1 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.