FFCP PHASE1:Mm9::chr10:84380014..84380040,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=237422|HGNC=|UniProt=Q80XE1|association_with_transcript=-320bp_to_ENSMUST00000038523,ENSMUST00000095385,NM_183172,uc007gkx.1,uc007gky.1_5end|description=CAGE_peak_4_at_Ric8b_5end|id=chr10:84380014..84380040,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!4.31e-08!63;UBERON:0003056!9.44e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0003056,5.85e-07,49;UBERON:0002346,9.18e-07,64;UBERON:0003075,9.18e-07,64;UBERON:0007284,9.18e-07,64|phase1_expression=1.92178616525753,0.348975407639361,0.454999239389536,0.90739263392049,0.500895729946347,1.00727563147134,0.233612640595526,0.129123323441576,0.140788722151667,0.234064526321993,0,0.398860794976682,0.342401459862411,0.611942816932982,0.333109761815663,0.404950534779652,0,0.473193248037357,0.411343300817216,0,1.19060606211498,0.397163804803541,0.261199789138935,0.159992422793407,0.22940928106717,0.57423196411502,0,0,0,0.252030129759931,0.443461021310609,0.635030673459631,1.23012957516914,0,0.288851619751275,0,0.612508068787107,0.418531630736908,0,1.0470474879476,0.588231488031014,0,0,0.251793635951155,0.709638518536602,0.917733760808408,0,0.218025156380447,0,0.194429899074283,0.279972843250725,0,2.51673909086605,2.17608642603403,1.34437519656986,0.257259436035947,0.573066879877513,0,1.41621522601718,0.528990979272033,2.53532561402472,0,0,0,0,0,0,0.384218305321555,1.24427534770173,0.810035629990144,0.630974884054146,1.99955689082663,0.883474163806454,1.22490799214954,0.958454710182364,0.919218786610021,3.30347642998166,1.78762273319263,1.0752457327937,1.58263545276233,1.37231465403614,1.56274011167028,1.11673199600552,3.37657566019008,1.06958773443767,1.17851434189467,1.28134512719193,0.372798891650601,0.227178579999552,0.529000920747499,0,0,0,1.61910957491345,1.29955283489534,0.448026887097336,0.983110940922263,0.340860645156116,0,0,0.985903938436763,1.28326477414318,0,0,0,0.253359865475099,0.505524445014783,0.45673551887624,0.258937883647172,1.1875371125186,0.693941307064543,1.52232739156071,0.461230994512117,0.452167921657868,1.05829836422134,0.753999547978053,0.494389935468748,0.86759614151947,0.884610551949874,2.91180329905337,1.10420759230197,0.484875253135222,1.86391761218122,2.92780797011547,0.83778682725382,0.766371165625774,0.479260498023681,0.599902730993408,0.381210681219194,3.74476598512057,1.37250180845588,2.51308704225729,2.43354048269187,2.04572365864264,2.49345653471472,2.10913641988085,0.712875546952214,0.995255764880744,0.758168275301024,2.10441855886474,1.04096354370163,0.459804208866946,1.62055916824814,1.65775299619287,1.56483948048054,1.15302348256365,1.78033276663485,3.88055056108524,1.29340795759705,1.32374256117473,1.23165786914764,1.31517439456545,0.556094498451196,1.0447564995665,0.411564272815887,0.59710280045548,0.702213187313235,0.257347907114715,0.568326998791185,0.621377317606506,0.234526059981096,0.540186184383045,1.42046841351126,1.37734962223183,1.23413690309903,0.930135779001631,1.07309360559848,1.63471479314037,1.97471819896177,1.31333971263276,2.1888578577381,1.31579988682799,1.53685080703735,1.47627060636409,1.68231958851302,2.36680608472354,0,0.528901133327089,1.49301775374664,0.464473343720877,0.644337306610467,0.605050573870028,0.889512175379481,1.14135375667535,0,0.823494773620054,1.50801125280162,1.39269530428806,1.36474860983384,0,0.864552199498777,0.398282546508734,1.32767530667157,0.913988100877831,0,0.814605311381257,1.35766741017338,0.911765658574141,1.26473074248515,0.885660887877613,0.470996183524124,0.493588655687202,1.1858105083486,0.166845105716094,0.393117990226406,1.12431056192427,0.608580364165509,2.17059443777175,1.01850340712568,0.863088412352432,0.972811360650212,0.274561413188081,2.87536413054709,1.11642284300551,0.624075346229121,1.01031551178845,1.07638448113147,0,0,0.757965647081939,0.488894929326078,0.509235257325564,1.40814148973101,1.34005005953453,0.476087281772027,1.56106918286239,1.10344600874334,1.7717175171902,0,0.81931657357869,0.345369963731791,0.433947175744535,1.50791283939272,0,0.983528546038072,0.551873492609465,2.40825884981688,3.16471553798949,0,4.79694761688309,0.315508219416257,0,1.29254038639679,0.716906393857656,0.891194696329576,0.566153061577665,0.404810701674894,1.75353514746787,1.97643888973262,1.92792789853084,0.99358059645788,2.13678724400706,1.14020871547503,0.494910368917606,1.32745138339963,0.728341908464944,0.906970670894253,0.565815239267694,0,1.22974059177571,1.80899805217755,2.90826983582004,0.356497378384721,0.316036757935816,2.10837217149998,1.03135543248187,3.06395645178409,1.62054984628179,2.06973894052407,1.07168517515796,1.77340233642274,2.67553226403106,1.81003922662333,1.522324745573,0.704015124191131,2.1183207086382,0.220528398054962,1.6488625294148,1.61464426695906,1.14594557363496,0.596861720015682,0.492422699235184,0.874442509889552,1.29797711407357,0.341741761595705,1.857481811669,0.740778109478847,0.753473828018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| ||
|EntrezGene=237422 | |||
|HGNC= | |||
|UniProt=Q80XE1 | |||
|association_with_transcript=-320bp_to_ENSMUST00000038523,ENSMUST00000095385,NM_183172,uc007gkx.1,uc007gky.1_5end | |||
|description=CAGE_peak_4_at_Ric8b_5end | |||
|id=chr10:84380014..84380040,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!4.31e-08!63;UBERON:0003056!9.44e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,5.85e-07,49;UBERON:0002346,9.18e-07,64;UBERON:0003075,9.18e-07,64;UBERON:0007284,9.18e-07,64 | |||
|phase1_expression=1.92178616525753,0.348975407639361,0.454999239389536,0.90739263392049,0.500895729946347,1.00727563147134,0.233612640595526,0.129123323441576,0.140788722151667,0.234064526321993,0,0.398860794976682,0.342401459862411,0.611942816932982,0.333109761815663,0.404950534779652,0,0.473193248037357,0.411343300817216,0,1.19060606211498,0.397163804803541,0.261199789138935,0.159992422793407,0.22940928106717,0.57423196411502,0,0,0,0.252030129759931,0.443461021310609,0.635030673459631,1.23012957516914,0,0.288851619751275,0,0.612508068787107,0.418531630736908,0,1.0470474879476,0.588231488031014,0,0,0.251793635951155,0.709638518536602,0.917733760808408,0,0.218025156380447,0,0.194429899074283,0.279972843250725,0,2.51673909086605,2.17608642603403,1.34437519656986,0.257259436035947,0.573066879877513,0,1.41621522601718,0.528990979272033,2.53532561402472,0,0,0,0,0,0,0.384218305321555,1.24427534770173,0.810035629990144,0.630974884054146,1.99955689082663,0.883474163806454,1.22490799214954,0.958454710182364,0.919218786610021,3.30347642998166,1.78762273319263,1.0752457327937,1.58263545276233,1.37231465403614,1.56274011167028,1.11673199600552,3.37657566019008,1.06958773443767,1.17851434189467,1.28134512719193,0.372798891650601,0.227178579999552,0.529000920747499,0,0,0,1.61910957491345,1.29955283489534,0.448026887097336,0.983110940922263,0.340860645156116,0,0,0.985903938436763,1.28326477414318,0,0,0,0.253359865475099,0.505524445014783,0.45673551887624,0.258937883647172,1.1875371125186,0.693941307064543,1.52232739156071,0.461230994512117,0.452167921657868,1.05829836422134,0.753999547978053,0.494389935468748,0.86759614151947,0.884610551949874,2.91180329905337,1.10420759230197,0.484875253135222,1.86391761218122,2.92780797011547,0.83778682725382,0.766371165625774,0.479260498023681,0.599902730993408,0.381210681219194,3.74476598512057,1.37250180845588,2.51308704225729,2.43354048269187,2.04572365864264,2.49345653471472,2.10913641988085,0.712875546952214,0.995255764880744,0.758168275301024,2.10441855886474,1.04096354370163,0.459804208866946,1.62055916824814,1.65775299619287,1.56483948048054,1.15302348256365,1.78033276663485,3.88055056108524,1.29340795759705,1.32374256117473,1.23165786914764,1.31517439456545,0.556094498451196,1.0447564995665,0.411564272815887,0.59710280045548,0.702213187313235,0.257347907114715,0.568326998791185,0.621377317606506,0.234526059981096,0.540186184383045,1.42046841351126,1.37734962223183,1.23413690309903,0.930135779001631,1.07309360559848,1.63471479314037,1.97471819896177,1.31333971263276,2.1888578577381,1.31579988682799,1.53685080703735,1.47627060636409,1.68231958851302,2.36680608472354,0,0.528901133327089,1.49301775374664,0.464473343720877,0.644337306610467,0.605050573870028,0.889512175379481,1.14135375667535,0,0.823494773620054,1.50801125280162,1.39269530428806,1.36474860983384,0,0.864552199498777,0.398282546508734,1.32767530667157,0.913988100877831,0,0.814605311381257,1.35766741017338,0.911765658574141,1.26473074248515,0.885660887877613,0.470996183524124,0.493588655687202,1.1858105083486,0.166845105716094,0.393117990226406,1.12431056192427,0.608580364165509,2.17059443777175,1.01850340712568,0.863088412352432,0.972811360650212,0.274561413188081,2.87536413054709,1.11642284300551,0.624075346229121,1.01031551178845,1.07638448113147,0,0,0.757965647081939,0.488894929326078,0.509235257325564,1.40814148973101,1.34005005953453,0.476087281772027,1.56106918286239,1.10344600874334,1.7717175171902,0,0.81931657357869,0.345369963731791,0.433947175744535,1.50791283939272,0,0.983528546038072,0.551873492609465,2.40825884981688,3.16471553798949,0,4.79694761688309,0.315508219416257,0,1.29254038639679,0.716906393857656,0.891194696329576,0.566153061577665,0.404810701674894,1.75353514746787,1.97643888973262,1.92792789853084,0.99358059645788,2.13678724400706,1.14020871547503,0.494910368917606,1.32745138339963,0.728341908464944,0.906970670894253,0.565815239267694,0,1.22974059177571,1.80899805217755,2.90826983582004,0.356497378384721,0.316036757935816,2.10837217149998,1.03135543248187,3.06395645178409,1.62054984628179,2.06973894052407,1.07168517515796,1.77340233642274,2.67553226403106,1.81003922662333,1.522324745573,0.704015124191131,2.1183207086382,0.220528398054962,1.6488625294148,1.61464426695906,1.14594557363496,0.596861720015682,0.492422699235184,0.874442509889552,1.29797711407357,0.341741761595705,1.857481811669,0.740778109478847,0.753473828018764,1.0935538217682,1.14389086603261,0.169978429993855,0.69975726161829,0.276399947608848,0,1.89801596148681,1.62655573701479,0.86404272657441,1.46361807210128,1.31017538247707,1.07891477107857,1.40510874733071,0.523511883968059,0.518459893167171,0,0.56369293868419,0.448549638131936,0.827292452285488,1.16670713006429,0.645799117388655,1.01373675294467,0.821500670520278,1.43224823328345,1.99232754408851,2.89900944991207,0.576060012515731,1.26404448251271,0.810900861160657,0.616265742988964,1.03936658382236,0.716106782669926,0.596044064343795,1.44234539423963,2.06765338044408,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| |||
|short_description=p4@Ric8b | |||
}} | |||
Revision as of 17:48, 12 September 2013
| Short description: | p4@Ric8b |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_4_at_Ric8b_5end |
| Coexpression cluster: | NA |
| Association with transcript: | -320bp_to_ENSMUST00000038523, ENSMUST00000095385, NM_183172, uc007gkx.1, uc007gky.1_5end |
| EntrezGene: | Ric8b |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| pre-chordal neural plate | 5.85e-07 | 49 |
| neurectoderm | 9.18e-07 | 64 |
| neural plate | 9.18e-07 | 64 |
| presumptive neural plate | 9.18e-07 | 64 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
