FFCP PHASE1:Hg19::chr5:167689978..167689992,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=NA|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript|HGNC=NA|TSSclassifier=N|UniProt=NA|association_with_transcript=NA|coexpression_cluster_id=C1956|description=CAGE_peak_at_chr5:167689978..167689992,+|id=chr5:167689978..167689992,+|ontology_enrichment_celltype=CL:0002620!1.89e-09!23;CL:0002159!1.45e-08!13;CL:0002076!3.29e-07!43|ontology_enrichment_celltype_v019=CL:0002620;8.48e-19;23!CL:0002159;4.14e-15;14!CL:0000362;7.94e-08;9!CL:0000240;9.47e-08;6!CL:0000311;9.47e-08;6!CL:0000079;9.47e-08;6!CL:0000237;9.47e-08;6!CL:0000317;5.02e-07;2!CL:1000448;5.02e-07;2!CL:0002308;5.02e-07;2!CL:0002140;5.02e-07;2|ontology_enrichment_celltype_v019_2=CL:0002620,5.08e-19,23;CL:0002159,3.86e-15,14;CL:0000076,4.54e-09,63;CL:0000057,7.42e-09,76;CL:0000362,9.52e-08,9;CL:0000240,1.18e-07,6;CL:0000311,1.18e-07,6;CL:0000079,1.18e-07,6;CL:0000237,1.18e-07,6;CL:0000036,1.18e-07,6;CL:0000357,1.18e-07,6;CL:0000114,1.18e-07,6;CL:0000317,5.34e-07,2;CL:1000448,5.34e-07,2;CL:0002308,5.34e-07,2;CL:0002140,5.34e-07,2|ontology_enrichment_development_v019=CL:0000357;9.47e-08;6!CL:0000114;9.47e-08;6|ontology_enrichment_disease=DOID:17!2.57e-07!5;DOID:450!2.57e-07!5;DOID:66!2.57e-07!5;DOID:423!2.57e-07!5;DOID:0080000!2.57e-07!5;DOID:11722!2.57e-07!5|ontology_enrichment_disease_v019=DOID:17;5.59e-15;5!DOID:450;5.59e-15;5!DOID:66;5.59e-15;5!DOID:423;5.59e-15;5!DOID:0080000;5.59e-15;5!DOID:11722;5.59e-15;5|ontology_enrichment_disease_v019_2=DOID:17,5.02e-15,5;DOID:450,5.02e-15,5;DOID:66,5.02e-15,5;DOID:423,5.02e-15,5;DOID:0080000,5.02e-15,5;DOID:11722,5.02e-15,5|ontology_enrichment_uberon=UBERON:0000924!8.97e-19!173;UBERON:0006601!8.97e-19!173;UBERON:0004121!4.01e-18!169;UBERON:0000033!4.17e-17!123;UBERON:0000153!3.76e-16!129;UBERON:0007811!3.76e-16!129;UBERON:0002346!1.56e-15!90;UBERON:0003075!5.95e-15!86;UBERON:0007284!5.95e-15!86;UBERON:0002020!9.35e-15!34;UBERON:0003528!9.35e-15!34;UBERON:0001869!1.26e-14!32;UBERON:0003056!1.86e-14!61;UBERON:0002780!3.28e-14!41;UBERON:0001890!3.28e-14!41;UBERON:0006240!3.28e-14!41;UBERON:0002619!8.31e-14!22;UBERON:0001049!1.01e-13!57;UBERON:0005068!1.01e-13!57;UBERON:0006241!1.01e-13!57;UBERON:0007135!1.01e-13!57;UBERON:0001950!1.08e-13!20;UBERON:0003080!1.16e-13!42;UBERON:0001893!2.53e-13!34;UBERON:0002791!7.37e-13!33;UBERON:0001017!7.89e-13!82;UBERON:0000073!7.90e-13!94;UBERON:0001016!7.90e-13!94;UBERON:0000955!2.11e-12!69;UBERON:0006238!2.11e-12!69;UBERON:0005743!2.57e-12!86;UBERON:0000475!9.66e-12!365;UBERON:0000956!1.71e-11!25;UBERON:0000203!1.71e-11!25;UBERON:0002616!3.13e-11!59;UBERON:0002097!3.87e-11!40;UBERON:0000062!1.32e-09!511;UBERON:0003102!1.41e-09!95;UBERON:0002199!4.69e-09!45;UBERON:0002416!4.69e-09!45|ontology_enrichment_uberon_v019=UBERON:0002097;3.26e-18;41!UBERON:0002199;6.10e-15;46!UBERON:0002416;6.10e-15;46!UBERON:0003102;7.46e-14;50!UBERON:0002419;5.02e-07;2!UBERON:0007771;5.02e-07;2!UBERON:0003297;5.02e-07;2!UBERON:0001821;5.02e-07;2!UBERON:0003487;5.02e-07;2!UBERON:0001820;5.02e-07;2|ontology_enrichment_uberon_v019_2=UBERON:0002097,1.31e-23,41;UBERON:0002199,1.93e-20,46;UBERON:0002416,1.93e-20,46;UBERON:0003102,7.33e-17,99;UBERON:0002419,5.34e-07,2;UBERON:0007771,5.34e-07,2;UBERON:0003297,5.34e-07,2;UBERON:0001821,5.34e-07,2;UBERON:0003487,5.34e-07,2;UBERON:0001820,5.34e-07,2;UBERON:0005089,5.34e-07,2;UBERON:0005088,5.34e-07,2|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0,0.263766978228454,0,0,0,0,0,0,0.369363174230364,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0.90361775633475,0,0,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00267582127178,0.144846518960824,0,0,0.189069634328136,0.443458794925128,0.614843499851882,0,1.82147644146271,1.48313777113772,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.3082821564276,0,0,0,0,0.354668382198357,0.560677600142307,0,1.2333377420858,0,0,0,0,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0.989067717114227,0,0,0,0,0,0,0,0,0.340296549480063,12.3778848625315,3.20336083227851,3.17897851739343,2.70081986475962,1.23663035086127,2.57640540045629,2.60563598864226,7.93248761533951,1.85130309806277,7.06814567883521,2.30124746605748,0.161646056818812,6.74518225781567,1.61203357164224,0.339121184620975,0.386521706326594,1.36373060295417,0.860413786167011,0,0,0,0,0,0,0,3.21620469096443,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53510069643662,0,0,0,0,1.54411029268673,2.96325770603289,1.1240175325762,2.01057944823262,2.31471112896324,0,0,0,0.463721619900307,0.117408694235822,0,0,0,0,0,0,0,0,0,6.04735661515894,4.67857820899875,0.716468181622786,3.19697332365358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0.129271715757778,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0.602878754119172,0.871533458600294,4.99864955910285,0,0,0,0,0,0,0,0,0.179060963239896,0,0,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=N | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C1956 | |||
|description=CAGE_peak_at_chr5:167689978..167689992,+ | |||
|id=chr5:167689978..167689992,+ | |||
|ontology_enrichment_celltype=CL:0002620!1.89e-09!23;CL:0002159!1.45e-08!13;CL:0002076!3.29e-07!43 | |||
|ontology_enrichment_celltype_v019=CL:0002620;8.48e-19;23!CL:0002159;4.14e-15;14!CL:0000362;7.94e-08;9!CL:0000240;9.47e-08;6!CL:0000311;9.47e-08;6!CL:0000079;9.47e-08;6!CL:0000237;9.47e-08;6!CL:0000317;5.02e-07;2!CL:1000448;5.02e-07;2!CL:0002308;5.02e-07;2!CL:0002140;5.02e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002620,5.08e-19,23;CL:0002159,3.86e-15,14;CL:0000076,4.54e-09,63;CL:0000057,7.42e-09,76;CL:0000362,9.52e-08,9;CL:0000240,1.18e-07,6;CL:0000311,1.18e-07,6;CL:0000079,1.18e-07,6;CL:0000237,1.18e-07,6;CL:0000036,1.18e-07,6;CL:0000357,1.18e-07,6;CL:0000114,1.18e-07,6;CL:0000317,5.34e-07,2;CL:1000448,5.34e-07,2;CL:0002308,5.34e-07,2;CL:0002140,5.34e-07,2 | |||
|ontology_enrichment_development_v019=CL:0000357;9.47e-08;6!CL:0000114;9.47e-08;6 | |||
|ontology_enrichment_disease=DOID:17!2.57e-07!5;DOID:450!2.57e-07!5;DOID:66!2.57e-07!5;DOID:423!2.57e-07!5;DOID:0080000!2.57e-07!5;DOID:11722!2.57e-07!5 | |||
|ontology_enrichment_disease_v019=DOID:17;5.59e-15;5!DOID:450;5.59e-15;5!DOID:66;5.59e-15;5!DOID:423;5.59e-15;5!DOID:0080000;5.59e-15;5!DOID:11722;5.59e-15;5 | |||
|ontology_enrichment_disease_v019_2=DOID:17,5.02e-15,5;DOID:450,5.02e-15,5;DOID:66,5.02e-15,5;DOID:423,5.02e-15,5;DOID:0080000,5.02e-15,5;DOID:11722,5.02e-15,5 | |||
|ontology_enrichment_uberon=UBERON:0000924!8.97e-19!173;UBERON:0006601!8.97e-19!173;UBERON:0004121!4.01e-18!169;UBERON:0000033!4.17e-17!123;UBERON:0000153!3.76e-16!129;UBERON:0007811!3.76e-16!129;UBERON:0002346!1.56e-15!90;UBERON:0003075!5.95e-15!86;UBERON:0007284!5.95e-15!86;UBERON:0002020!9.35e-15!34;UBERON:0003528!9.35e-15!34;UBERON:0001869!1.26e-14!32;UBERON:0003056!1.86e-14!61;UBERON:0002780!3.28e-14!41;UBERON:0001890!3.28e-14!41;UBERON:0006240!3.28e-14!41;UBERON:0002619!8.31e-14!22;UBERON:0001049!1.01e-13!57;UBERON:0005068!1.01e-13!57;UBERON:0006241!1.01e-13!57;UBERON:0007135!1.01e-13!57;UBERON:0001950!1.08e-13!20;UBERON:0003080!1.16e-13!42;UBERON:0001893!2.53e-13!34;UBERON:0002791!7.37e-13!33;UBERON:0001017!7.89e-13!82;UBERON:0000073!7.90e-13!94;UBERON:0001016!7.90e-13!94;UBERON:0000955!2.11e-12!69;UBERON:0006238!2.11e-12!69;UBERON:0005743!2.57e-12!86;UBERON:0000475!9.66e-12!365;UBERON:0000956!1.71e-11!25;UBERON:0000203!1.71e-11!25;UBERON:0002616!3.13e-11!59;UBERON:0002097!3.87e-11!40;UBERON:0000062!1.32e-09!511;UBERON:0003102!1.41e-09!95;UBERON:0002199!4.69e-09!45;UBERON:0002416!4.69e-09!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0002097;3.26e-18;41!UBERON:0002199;6.10e-15;46!UBERON:0002416;6.10e-15;46!UBERON:0003102;7.46e-14;50!UBERON:0002419;5.02e-07;2!UBERON:0007771;5.02e-07;2!UBERON:0003297;5.02e-07;2!UBERON:0001821;5.02e-07;2!UBERON:0003487;5.02e-07;2!UBERON:0001820;5.02e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002097,1.31e-23,41;UBERON:0002199,1.93e-20,46;UBERON:0002416,1.93e-20,46;UBERON:0003102,7.33e-17,99;UBERON:0002419,5.34e-07,2;UBERON:0007771,5.34e-07,2;UBERON:0003297,5.34e-07,2;UBERON:0001821,5.34e-07,2;UBERON:0003487,5.34e-07,2;UBERON:0001820,5.34e-07,2;UBERON:0005089,5.34e-07,2;UBERON:0005088,5.34e-07,2 | |||
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|short_description=p@chr5:167689978..167689992,+ | |||
}} |
Revision as of 14:40, 13 September 2013
Short description: | p@chr5:167689978..167689992, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:167689978..167689992, + |
Coexpression cluster: | C1956_Fibroblast_mesothelioma_Mesothelial_pineal_Mallassezderived_mesenchymal_osteoclastoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
skin fibroblast | 5.08e-19 | 23 |
general ecto-epithelial cell | 3.86e-15 | 14 |
squamous epithelial cell | 4.54e-09 | 63 |
fibroblast | 7.42e-09 | 76 |
epidermal cell | 9.52e-08 | 9 |
stratified squamous epithelial cell | 1.18e-07 | 6 |
keratin accumulating cell | 1.18e-07 | 6 |
stratified epithelial cell | 1.18e-07 | 6 |
keratinizing barrier epithelial cell | 1.18e-07 | 6 |
epithelial fate stem cell | 1.18e-07 | 6 |
stratified epithelial stem cell | 1.18e-07 | 6 |
surface ectodermal cell | 1.18e-07 | 6 |
sebum secreting cell | 5.34e-07 | 2 |
epithelial cell of sweat gland | 5.34e-07 | 2 |
epithelial cell of skin gland | 5.34e-07 | 2 |
acinar cell of sebaceous gland | 5.34e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
skin of body | 1.31e-23 | 41 |
integument | 1.93e-20 | 46 |
integumental system | 1.93e-20 | 46 |
surface structure | 7.33e-17 | 99 |
skin gland | 5.34e-07 | 2 |
epidermis gland | 5.34e-07 | 2 |
gland of integumental system | 5.34e-07 | 2 |
sebaceous gland | 5.34e-07 | 2 |
skin sebaceous gland | 5.34e-07 | 2 |
sweat gland | 5.34e-07 | 2 |
sweat gland placode | 5.34e-07 | 2 |
sebaceous gland placode | 5.34e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system disease | 5.02e-15 | 5 |
myotonic disease | 5.02e-15 | 5 |
muscle tissue disease | 5.02e-15 | 5 |
myopathy | 5.02e-15 | 5 |
muscular disease | 5.02e-15 | 5 |
myotonic dystrophy | 5.02e-15 | 5 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.