FFCP PHASE1:Hg19::chr6:111912559..111912589,-: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=10758|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding|HGNC=1343|TSSclassifier=W|UniProt=O43734|association_with_transcript=200bp_to_AK026602_5end|description=CAGE_peak_8_at_TRAF3IP2_5end|id=chr6:111912559..111912589,-|ontology_enrichment_celltype=CL:0002076!5.94e-10!43;CL:0000055!2.23e-09!180;CL:0000057!4.35e-08!75;CL:0000548!1.15e-07!679;CL:0000004!1.15e-07!679;CL:0000255!1.15e-07!679;CL:0000220!1.33e-07!246;CL:0000223!1.94e-07!59;CL:0002251!2.32e-07!21;CL:0002321!2.62e-07!248;CL:0000012!2.66e-07!682;CL:0000144!4.52e-07!625|ontology_enrichment_celltype_v019=CL:0002368;3.68e-11;13!CL:0002076;5.02e-11;42!CL:0002159;2.06e-08;14!CL:0002202;6.14e-08;9!CL:0002632;6.14e-08;9!CL:0000307;2.64e-07;3!CL:0000135;3.06e-07;3!CL:0000388;3.06e-07;3!CL:0000622;3.52e-07;5!CL:0002251;5.56e-07;20|ontology_enrichment_celltype_v019_2=CL:0002076,8.52e-15,42;CL:0000223,1.30e-11,58;CL:0002368,2.56e-11,13;CL:0002159,2.74e-08,14;CL:0002202,5.58e-08,9;CL:0002632,5.58e-08,9;CL:0000136,1.09e-07,15;CL:0000068,1.98e-07,3;CL:0000069,1.98e-07,3;CL:0000307,1.98e-07,3;CL:0000377,1.98e-07,3;CL:0000135,2.11e-07,3;CL:0000388,2.11e-07,3;CL:0002251,3.55e-07,20;CL:0000622,3.93e-07,5;CL:0002321,7.02e-07,250|ontology_enrichment_development_v019=CL:0000377;2.64e-07;3!CL:0000223;4.32e-07;58|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003102!2.60e-19!95;UBERON:0000165!9.42e-10!28;UBERON:0000930!9.42e-10!28;UBERON:0000161!2.94e-09!35;UBERON:0001444!6.37e-09!48;UBERON:0002199!7.83e-08!45;UBERON:0002416!7.83e-08!45;UBERON:0004119!9.62e-08!169;UBERON:0000925!9.62e-08!169;UBERON:0006595!9.62e-08!169;UBERON:0000475!1.54e-07!365;UBERON:0000166!1.57e-07!21|ontology_enrichment_uberon_v019=UBERON:0003729;7.18e-12;13!UBERON:0000161;1.40e-09;19!UBERON:0000166;1.40e-09;19!UBERON:0000165;1.82e-08;28!UBERON:0007846;3.06e-07;3!UBERON:0000043;3.06e-07;3!UBERON:0007845;3.06e-07;3!UBERON:0000344;4.74e-07;20!UBERON:0007811;5.38e-07;52!UBERON:0001444;6.63e-07;48!UBERON:0001828;9.47e-07;8|ontology_enrichment_uberon_v019_2=UBERON:0003102,5.05e-17,99;UBERON:0003729,3.60e-12,13;UBERON:0000166,1.33e-09,22;UBERON:0000165,1.41e-09,29;UBERON:0000930,1.41e-09,29;UBERON:0000033,1.49e-09,56;UBERON:0000161,1.71e-09,36;UBERON:0001444,2.58e-09,49;UBERON:0000153,3.78e-08,62;UBERON:0007811,3.78e-08,62;UBERON:0001004,9.56e-08,74;UBERON:0007846,2.11e-07,3;UBERON:0000043,2.11e-07,3;UBERON:0007845,2.11e-07,3;UBERON:0000344,3.13e-07,20|phase1_expression=1.2717486548939,1.92690471501885,0.281908808191942,1.0007329835313,2.68176656656373,0,2.53299878168311,0.631719873426831,2.87304191019822,0,0,0,0,3.46545788288131,1.32558950291166,0,0,0,0.975865597581014,0.246242116153576,0,0,0,0.273748850145768,0,0.0764134057479513,0,0,0,0,0,2.75826367343678,1.204823675113,1.10926203050036,0.0774672005803016,0,0,0,0,0,0,0,0,0,0,0,0.232429036905685,0,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0,0.639337125799041,0.329851300186716,0.199463657621632,0,0.580418477257168,0.56738522469114,0.622822248995575,0,0,0,1.21079900526674,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25618263945135,0,0.164437904603676,0,0.289803085735052,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0.144824403882799,0,0,0,0.361439152384566,2.50668955317945,1.73815822752988,0,0.486634870302636,0.0945348171640679,0,0.175669571386252,0.0654895377488563,2.18577172975525,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.18047026071267,0,0,0.529636723252875,0,0,0,0,0.24666754841716,0,0,0,0.302714855289863,0,2.10889288650417,0.624320153660641,0.570471821544449,1.04614076386261,0.704606991862589,0.809364721840658,0,2.04154171254893,0.491337269247072,3.51307655997603,2.37600571456411,0.494533858557114,3.64064544775211,0.718618141816238,0.841680569770331,0.750711119231785,0,2.19488810440419,0.30648779579902,0.901428353439581,0,0.358779271377724,1.70845911054854,0,0.900273288253207,1.33968288009971,0.772921620136887,0.18611685633159,0,0.487185025805993,0.252433774244115,1.65689817556139,0.646584227275248,0,0.201504196455281,1.52604533079439,1.73934767846967,0.545492241181669,2.00763216772303,0,0,0.116193942869518,0.10366105501537,0,0,0,2.57296375277154,0,0.464367928031979,3.60939740834793,0,0,0,0.110293972732394,0,0,0,0.196221465125346,0,0,0,0,0,0,0,0,0,0.245976877086227,0.171567810298526,1.75600456653801,3.37205259772859,0.301586917234893,1.75918045801206,1.3032332212413,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,1.00789276919316,0.850650583454319,0.895585227028483,1.16253575405585,2.30029607499127,0,0,0.207328115540772,0.144119953416961,0.25248486685276,0,0,0,0,0.102827492703324,0,0.285826432630578,0,0,0,0.258543431515556,0,0.845302752556,0.26593811658487,1.04007436911366,0.257207374262142,0,0.532844358032199,0,2.17048642156577,0.823240336780769,0.65147236858747,0,0,0.301439377059586,0,0.399891964728228,0,0,0,0.958499421966331,0,0,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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=10758 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=1343 | |||
|TSSclassifier=W | |||
|UniProt=O43734 | |||
|association_with_transcript=200bp_to_AK026602_5end | |||
|description=CAGE_peak_8_at_TRAF3IP2_5end | |||
|id=chr6:111912559..111912589,- | |||
|ontology_enrichment_celltype=CL:0002076!5.94e-10!43;CL:0000055!2.23e-09!180;CL:0000057!4.35e-08!75;CL:0000548!1.15e-07!679;CL:0000004!1.15e-07!679;CL:0000255!1.15e-07!679;CL:0000220!1.33e-07!246;CL:0000223!1.94e-07!59;CL:0002251!2.32e-07!21;CL:0002321!2.62e-07!248;CL:0000012!2.66e-07!682;CL:0000144!4.52e-07!625 | |||
|ontology_enrichment_celltype_v019=CL:0002368;3.68e-11;13!CL:0002076;5.02e-11;42!CL:0002159;2.06e-08;14!CL:0002202;6.14e-08;9!CL:0002632;6.14e-08;9!CL:0000307;2.64e-07;3!CL:0000135;3.06e-07;3!CL:0000388;3.06e-07;3!CL:0000622;3.52e-07;5!CL:0002251;5.56e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,8.52e-15,42;CL:0000223,1.30e-11,58;CL:0002368,2.56e-11,13;CL:0002159,2.74e-08,14;CL:0002202,5.58e-08,9;CL:0002632,5.58e-08,9;CL:0000136,1.09e-07,15;CL:0000068,1.98e-07,3;CL:0000069,1.98e-07,3;CL:0000307,1.98e-07,3;CL:0000377,1.98e-07,3;CL:0000135,2.11e-07,3;CL:0000388,2.11e-07,3;CL:0002251,3.55e-07,20;CL:0000622,3.93e-07,5;CL:0002321,7.02e-07,250 | |||
|ontology_enrichment_development_v019=CL:0000377;2.64e-07;3!CL:0000223;4.32e-07;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!2.60e-19!95;UBERON:0000165!9.42e-10!28;UBERON:0000930!9.42e-10!28;UBERON:0000161!2.94e-09!35;UBERON:0001444!6.37e-09!48;UBERON:0002199!7.83e-08!45;UBERON:0002416!7.83e-08!45;UBERON:0004119!9.62e-08!169;UBERON:0000925!9.62e-08!169;UBERON:0006595!9.62e-08!169;UBERON:0000475!1.54e-07!365;UBERON:0000166!1.57e-07!21 | |||
|ontology_enrichment_uberon_v019=UBERON:0003729;7.18e-12;13!UBERON:0000161;1.40e-09;19!UBERON:0000166;1.40e-09;19!UBERON:0000165;1.82e-08;28!UBERON:0007846;3.06e-07;3!UBERON:0000043;3.06e-07;3!UBERON:0007845;3.06e-07;3!UBERON:0000344;4.74e-07;20!UBERON:0007811;5.38e-07;52!UBERON:0001444;6.63e-07;48!UBERON:0001828;9.47e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,5.05e-17,99;UBERON:0003729,3.60e-12,13;UBERON:0000166,1.33e-09,22;UBERON:0000165,1.41e-09,29;UBERON:0000930,1.41e-09,29;UBERON:0000033,1.49e-09,56;UBERON:0000161,1.71e-09,36;UBERON:0001444,2.58e-09,49;UBERON:0000153,3.78e-08,62;UBERON:0007811,3.78e-08,62;UBERON:0001004,9.56e-08,74;UBERON:0007846,2.11e-07,3;UBERON:0000043,2.11e-07,3;UBERON:0007845,2.11e-07,3;UBERON:0000344,3.13e-07,20 | |||
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| |||
|short_description=p8@TRAF3IP2 | |||
}} |
Revision as of 17:24, 13 September 2013
Short description: | p8@TRAF3IP2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_8_at_TRAF3IP2_5end |
Coexpression cluster: | NA |
Association with transcript: | 200bp_to_AK026602_5end |
EntrezGene: | TRAF3IP2 |
HGNC: | 1343 |
UniProt: | O43734 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 8.52e-15 | 42 |
endodermal cell | 1.30e-11 | 58 |
respiratory epithelial cell | 2.56e-11 | 13 |
general ecto-epithelial cell | 2.74e-08 | 14 |
epithelial cell of tracheobronchial tree | 5.58e-08 | 9 |
epithelial cell of lower respiratory tract | 5.58e-08 | 9 |
fat cell | 1.09e-07 | 15 |
duct epithelial cell | 1.98e-07 | 3 |
branched duct epithelial cell | 1.98e-07 | 3 |
tracheal epithelial cell | 1.98e-07 | 3 |
tracheoblast | 1.98e-07 | 3 |
fibrocyte | 2.11e-07 | 3 |
tendon cell | 2.11e-07 | 3 |
epithelial cell of alimentary canal | 3.55e-07 | 20 |
acinar cell | 3.93e-07 | 5 |
embryonic cell | 7.02e-07 | 250 |
Ontology term | p-value | n |
---|---|---|
surface structure | 5.05e-17 | 99 |
mouth mucosa | 3.60e-12 | 13 |
oral opening | 1.33e-09 | 22 |
mouth | 1.41e-09 | 29 |
stomodeum | 1.41e-09 | 29 |
head | 1.49e-09 | 56 |
orifice | 1.71e-09 | 36 |
subdivision of head | 2.58e-09 | 49 |
anterior region of body | 3.78e-08 | 62 |
craniocervical region | 3.78e-08 | 62 |
respiratory system | 9.56e-08 | 74 |
dense regular connective tissue | 2.11e-07 | 3 |
tendon | 2.11e-07 | 3 |
regular connective tissue | 2.11e-07 | 3 |
mucosa | 3.13e-07 | 20 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.