FFCP PHASE1:Hg19::chr6:31022008..31022019,+: Difference between revisions
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{{FFCP | {{FFCP|DPIdataset=robustDPI|EntrezGene=285834|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA|HGNC=27780|TSSclassifier=S|UniProt=|association_with_transcript=24bp_to_ENST00000426185,NR_003948,uc003nsj.1,uc010jsi.1_5end|coexpression_cluster_id=C31|description=CAGE_peak_2_at_HCG22_5end|id=chr6:31022008..31022019,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_development_v019=UBERON:0009143;4.61e-26;1!UBERON:0008814;1.29e-13;2!UBERON:0010056;1.29e-13;2|ontology_enrichment_disease=|ontology_enrichment_disease_v019=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!3.47e-40!57;UBERON:0005068!3.47e-40!57;UBERON:0006241!3.47e-40!57;UBERON:0007135!3.47e-40!57;UBERON:0001017!2.07e-30!82;UBERON:0007023!5.84e-30!115;UBERON:0002616!1.80e-29!59;UBERON:0003075!5.31e-29!86;UBERON:0007284!5.31e-29!86;UBERON:0005743!1.03e-28!86;UBERON:0002346!2.00e-27!90;UBERON:0000955!2.62e-26!69;UBERON:0006238!2.62e-26!69;UBERON:0000073!2.06e-25!94;UBERON:0001016!2.06e-25!94;UBERON:0000153!2.33e-25!129;UBERON:0007811!2.33e-25!129;UBERON:0002298!4.49e-24!8;UBERON:0002780!3.23e-23!41;UBERON:0001890!3.23e-23!41;UBERON:0006240!3.23e-23!41;UBERON:0000033!3.37e-23!123;UBERON:0003080!1.39e-22!42;UBERON:0001893!6.18e-22!34;UBERON:0002020!1.17e-21!34;UBERON:0003528!1.17e-21!34;UBERON:0003076!2.34e-20!15;UBERON:0003057!2.34e-20!15;UBERON:0002791!1.34e-19!33;UBERON:0004121!6.33e-19!169;UBERON:0003056!2.52e-18!61;UBERON:0000924!2.59e-18!173;UBERON:0006601!2.59e-18!173;UBERON:0001869!3.33e-17!32;UBERON:0000956!6.74e-16!25;UBERON:0000203!6.74e-16!25;UBERON:0001896!3.25e-13!3;UBERON:0005290!3.25e-13!3;UBERON:0010096!3.25e-13!3;UBERON:0002240!7.62e-13!3;UBERON:0000988!1.76e-12!3;UBERON:0006331!2.15e-12!3;UBERON:0002619!4.01e-12!22;UBERON:0004733!1.19e-11!12;UBERON:0002028!1.19e-11!12;UBERON:0007277!1.19e-11!12;UBERON:0000064!5.14e-11!219;UBERON:0004732!1.06e-10!13;UBERON:0000477!1.28e-10!286;UBERON:0001950!1.78e-10!20;UBERON:0004111!1.66e-09!241;UBERON:0000025!2.24e-09!194;UBERON:0002148!1.17e-08!2;UBERON:0009662!1.17e-08!2;UBERON:0000475!1.38e-08!365;UBERON:0005174!7.07e-08!5;UBERON:0001137!7.07e-08!5;UBERON:0000349!7.07e-08!5;UBERON:0001872!1.10e-07!5;UBERON:0002308!3.14e-07!9;UBERON:0000125!3.14e-07!9;UBERON:0001042!5.68e-07!10;UBERON:0009145!5.68e-07!10;UBERON:0001723!8.36e-07!3;UBERON:0001033!8.36e-07!3;UBERON:0010056!8.36e-07!3|ontology_enrichment_uberon_v019=UBERON:0001723;5.99e-34;3!UBERON:0001033;5.99e-34;3!UBERON:0005795;2.78e-26;1!UBERON:0002372;3.58e-26;1!UBERON:0001961;3.58e-26;1!UBERON:0001744;3.58e-26;1!UBERON:0001042;3.58e-26;1!UBERON:0001735;3.58e-26;1!UBERON:0002336;8.64e-26;1!UBERON:0011215;8.64e-26;1!UBERON:0001018;8.64e-26;1!UBERON:0002473;8.64e-26;1!UBERON:0005340;8.64e-26;1!UBERON:0003544;8.64e-26;1!UBERON:0005970;8.64e-26;1!UBERON:0002316;8.64e-26;1!UBERON:0001020;8.64e-26;1!UBERON:0002437;8.64e-26;1!UBERON:0006562;8.28e-14;2!UBERON:0005162;1.29e-13;2!UBERON:0000122;1.29e-13;2!UBERON:0001043;1.30e-09;3!UBERON:0000165;1.10e-08;28|ontology_enrichment_uberon_v019_2=UBERON:0001723,5.51e-34,3;UBERON:0001033,5.51e-34,3;UBERON:0010056,5.51e-34,3;UBERON:0002372,3.58e-26,1;UBERON:0001961,3.58e-26,1;UBERON:0001744,3.58e-26,1;UBERON:0001735,3.58e-26,1;UBERON:0002336,9.79e-26,1;UBERON:0011215,9.79e-26,1;UBERON:0001018,9.79e-26,1;UBERON:0002473,9.79e-26,1;UBERON:0005340,9.79e-26,1;UBERON:0003544,9.79e-26,1;UBERON:0005970,9.79e-26,1;UBERON:0002316,9.79e-26,1;UBERON:0001020,9.79e-26,1;UBERON:0002437,9.79e-26,1;UBERON:0001042,4.76e-23,10;UBERON:0009145,4.76e-23,10;UBERON:0006562,4.98e-21,11;UBERON:0005162,1.37e-13,2;UBERON:0000122,1.37e-13,2;UBERON:0001557,1.70e-12,19;UBERON:0000166,6.93e-11,22;UBERON:0001043,1.30e-09,3;UBERON:0009143,1.30e-09,3;UBERON:0000165,2.05e-08,29;UBERON:0000930,2.05e-08,29;UBERON:0000161,6.79e-07,36|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0.251085279189606,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0945348171640679,0,0.175669571386252,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.509752546090077,0.831076008928724,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0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| ||
|DPIdataset=robustDPI | |||
|EntrezGene=285834 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=27780 | |||
|TSSclassifier=S | |||
|UniProt= | |||
|association_with_transcript=24bp_to_ENST00000426185,NR_003948,uc003nsj.1,uc010jsi.1_5end | |||
|coexpression_cluster_id=C31 | |||
|description=CAGE_peak_2_at_HCG22_5end | |||
|id=chr6:31022008..31022019,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0009143;4.61e-26;1!UBERON:0008814;1.29e-13;2!UBERON:0010056;1.29e-13;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!3.47e-40!57;UBERON:0005068!3.47e-40!57;UBERON:0006241!3.47e-40!57;UBERON:0007135!3.47e-40!57;UBERON:0001017!2.07e-30!82;UBERON:0007023!5.84e-30!115;UBERON:0002616!1.80e-29!59;UBERON:0003075!5.31e-29!86;UBERON:0007284!5.31e-29!86;UBERON:0005743!1.03e-28!86;UBERON:0002346!2.00e-27!90;UBERON:0000955!2.62e-26!69;UBERON:0006238!2.62e-26!69;UBERON:0000073!2.06e-25!94;UBERON:0001016!2.06e-25!94;UBERON:0000153!2.33e-25!129;UBERON:0007811!2.33e-25!129;UBERON:0002298!4.49e-24!8;UBERON:0002780!3.23e-23!41;UBERON:0001890!3.23e-23!41;UBERON:0006240!3.23e-23!41;UBERON:0000033!3.37e-23!123;UBERON:0003080!1.39e-22!42;UBERON:0001893!6.18e-22!34;UBERON:0002020!1.17e-21!34;UBERON:0003528!1.17e-21!34;UBERON:0003076!2.34e-20!15;UBERON:0003057!2.34e-20!15;UBERON:0002791!1.34e-19!33;UBERON:0004121!6.33e-19!169;UBERON:0003056!2.52e-18!61;UBERON:0000924!2.59e-18!173;UBERON:0006601!2.59e-18!173;UBERON:0001869!3.33e-17!32;UBERON:0000956!6.74e-16!25;UBERON:0000203!6.74e-16!25;UBERON:0001896!3.25e-13!3;UBERON:0005290!3.25e-13!3;UBERON:0010096!3.25e-13!3;UBERON:0002240!7.62e-13!3;UBERON:0000988!1.76e-12!3;UBERON:0006331!2.15e-12!3;UBERON:0002619!4.01e-12!22;UBERON:0004733!1.19e-11!12;UBERON:0002028!1.19e-11!12;UBERON:0007277!1.19e-11!12;UBERON:0000064!5.14e-11!219;UBERON:0004732!1.06e-10!13;UBERON:0000477!1.28e-10!286;UBERON:0001950!1.78e-10!20;UBERON:0004111!1.66e-09!241;UBERON:0000025!2.24e-09!194;UBERON:0002148!1.17e-08!2;UBERON:0009662!1.17e-08!2;UBERON:0000475!1.38e-08!365;UBERON:0005174!7.07e-08!5;UBERON:0001137!7.07e-08!5;UBERON:0000349!7.07e-08!5;UBERON:0001872!1.10e-07!5;UBERON:0002308!3.14e-07!9;UBERON:0000125!3.14e-07!9;UBERON:0001042!5.68e-07!10;UBERON:0009145!5.68e-07!10;UBERON:0001723!8.36e-07!3;UBERON:0001033!8.36e-07!3;UBERON:0010056!8.36e-07!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0001723;5.99e-34;3!UBERON:0001033;5.99e-34;3!UBERON:0005795;2.78e-26;1!UBERON:0002372;3.58e-26;1!UBERON:0001961;3.58e-26;1!UBERON:0001744;3.58e-26;1!UBERON:0001042;3.58e-26;1!UBERON:0001735;3.58e-26;1!UBERON:0002336;8.64e-26;1!UBERON:0011215;8.64e-26;1!UBERON:0001018;8.64e-26;1!UBERON:0002473;8.64e-26;1!UBERON:0005340;8.64e-26;1!UBERON:0003544;8.64e-26;1!UBERON:0005970;8.64e-26;1!UBERON:0002316;8.64e-26;1!UBERON:0001020;8.64e-26;1!UBERON:0002437;8.64e-26;1!UBERON:0006562;8.28e-14;2!UBERON:0005162;1.29e-13;2!UBERON:0000122;1.29e-13;2!UBERON:0001043;1.30e-09;3!UBERON:0000165;1.10e-08;28 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001723,5.51e-34,3;UBERON:0001033,5.51e-34,3;UBERON:0010056,5.51e-34,3;UBERON:0002372,3.58e-26,1;UBERON:0001961,3.58e-26,1;UBERON:0001744,3.58e-26,1;UBERON:0001735,3.58e-26,1;UBERON:0002336,9.79e-26,1;UBERON:0011215,9.79e-26,1;UBERON:0001018,9.79e-26,1;UBERON:0002473,9.79e-26,1;UBERON:0005340,9.79e-26,1;UBERON:0003544,9.79e-26,1;UBERON:0005970,9.79e-26,1;UBERON:0002316,9.79e-26,1;UBERON:0001020,9.79e-26,1;UBERON:0002437,9.79e-26,1;UBERON:0001042,4.76e-23,10;UBERON:0009145,4.76e-23,10;UBERON:0006562,4.98e-21,11;UBERON:0005162,1.37e-13,2;UBERON:0000122,1.37e-13,2;UBERON:0001557,1.70e-12,19;UBERON:0000166,6.93e-11,22;UBERON:0001043,1.30e-09,3;UBERON:0009143,1.30e-09,3;UBERON:0000165,2.05e-08,29;UBERON:0000930,2.05e-08,29;UBERON:0000161,6.79e-07,36 | |||
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|short_description=p2@HCG22 | |||
}} |
Revision as of 20:07, 13 September 2013
Short description: | p2@HCG22 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_HCG22_5end |
Coexpression cluster: | C31_skeletal_tongue_diaphragm_throat_penis_skin_trachea |
Association with transcript: | 24bp_to_ENST00000426185, NR_003948, uc003nsj.1, uc010jsi.1_5end |
EntrezGene: | HCG22 |
HGNC: | 27780 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
tongue | 5.51e-34 | 3 |
gustatory system | 5.51e-34 | 3 |
future tongue | 5.51e-34 | 3 |
tonsil | 3.58e-26 | 1 |
mucosa-associated lymphoid tissue | 3.58e-26 | 1 |
lymphoid tissue | 3.58e-26 | 1 |
tonsillar ring | 3.58e-26 | 1 |
corpus callosum | 9.79e-26 | 1 |
central nervous system cell part cluster | 9.79e-26 | 1 |
axon tract | 9.79e-26 | 1 |
intercerebral commissure | 9.79e-26 | 1 |
dorsal telencephalic commissure | 9.79e-26 | 1 |
brain white matter | 9.79e-26 | 1 |
brain commissure | 9.79e-26 | 1 |
white matter | 9.79e-26 | 1 |
nervous system commissure | 9.79e-26 | 1 |
cerebral hemisphere white matter | 9.79e-26 | 1 |
chordate pharynx | 4.76e-23 | 10 |
pharyngeal region of foregut | 4.76e-23 | 10 |
pharynx | 4.98e-21 | 11 |
multi cell component structure | 1.37e-13 | 2 |
neuron projection bundle | 1.37e-13 | 2 |
upper respiratory tract | 1.70e-12 | 19 |
oral opening | 6.93e-11 | 22 |
esophagus | 1.30e-09 | 3 |
esophageal region | 1.30e-09 | 3 |
mouth | 2.05e-08 | 29 |
stomodeum | 2.05e-08 | 29 |
orifice | 6.79e-07 | 36 |
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.