FFCP PHASE1:Mm9::chr1:36331417..36331462,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=6|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr1:36331417..36331462,+|id=chr1:36331417..36331462,+|ontology_enrichment_celltype=CL:0002563!6.76e-21!9;CL:0002251!6.76e-21!9;CL:0000239!2.37e-14!6;CL:0000677!2.37e-14!6;CL:0000212!2.37e-14!6;CL:0000584!2.37e-14!6;CL:0000066!1.69e-13!25;CL:0000075!3.57e-12!7;CL:0002076!9.77e-12!15;CL:0000223!3.36e-10!20;CL:0000063!3.49e-10!66;CL:0002250!4.06e-08!3;CL:0000473!8.83e-08!3;CL:0000627!8.83e-08!3;CL:0000682!8.83e-08!3;CL:0000838!1.20e-07!12;CL:0000542!5.59e-07!13;CL:0000051!5.59e-07!13|ontology_enrichment_celltype_v019_2=CL:0002563,1.12e-46,9;CL:0002251,1.12e-46,9;CL:0000239,2.43e-31,6;CL:0000677,2.43e-31,6;CL:0000584,2.43e-31,6;CL:0000066,1.01e-28,25;CL:0002076,1.28e-27,15;CL:0000075,7.91e-27,7;CL:0000223,1.88e-20,20;CL:0002250,8.31e-17,3;CL:0000682,5.04e-16,3;CL:0000473,3.60e-07,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!3.20e-27!15;UBERON:0001242!1.25e-23!13;UBERON:0000060!1.25e-23!13;UBERON:0001262!1.25e-23!13;UBERON:0004786!1.25e-23!13;UBERON:0003350!6.76e-21!9;UBERON:0004808!6.76e-21!9;UBERON:0001277!6.76e-21!9;UBERON:0004923!7.00e-18!24;UBERON:0000485!9.91e-17!11;UBERON:0000160!1.48e-12!43;UBERON:0005409!3.88e-10!59|ontology_enrichment_uberon_v019_2=UBERON:0003350,1.12e-46,9;UBERON:0004808,1.12e-46,9;UBERON:0001277,1.12e-46,9;UBERON:0000485,5.07e-38,11;UBERON:0001242,5.07e-32,13;UBERON:0001262,5.07e-32,13;UBERON:0004786,5.07e-32,13;UBERON:0000344,1.28e-27,15;UBERON:0004923,7.31e-17,24;UBERON:0000160,8.69e-16,31;UBERON:0005409,5.94e-10,47;UBERON:0003929,2.94e-08,55|phase1_expression=0,2.09385244583617,4.54999239389536,7.86406949397758,9.5170188689806,1.84667199103079,1.40167584357315,1.03298658753261,0.281577444303333,0,0,0,1.02720437958723,0.34968160967599,0,0,0,0,0,0.42438965179803,0,0.198581902401771,0,0.47997726838022,0.68822784320151,2.29692785646008,2.15380998079537,1.72376986148711,0.190023419456374,0.504060259519861,0.665191531965914,0,0,0,2.88851619751275,2.82598897109437,2.45003227514843,0.837063261473815,0,0,31.7645003536748,0.683045484958446,0,0,0,0,0,0,0,0,0,0,0.503347818173209,0,2.35265659399725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.679971333707751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.766371165625774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22237804384487,0,1.89811624617805,0.164698954724011,0,0,0,0,0,0.597423819763102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0.170870880797853,0,0,0,0,0,0.509935289981566,0.559805809294632,0.690999869022119,0,0,0,0,0,0,0,0,0,0.518459893167171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr1:36331417..36331462,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=6 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr1:36331417..36331462,+ | |||
|id=chr1:36331417..36331462,+ | |||
|ontology_enrichment_celltype=CL:0002563!6.76e-21!9;CL:0002251!6.76e-21!9;CL:0000239!2.37e-14!6;CL:0000677!2.37e-14!6;CL:0000212!2.37e-14!6;CL:0000584!2.37e-14!6;CL:0000066!1.69e-13!25;CL:0000075!3.57e-12!7;CL:0002076!9.77e-12!15;CL:0000223!3.36e-10!20;CL:0000063!3.49e-10!66;CL:0002250!4.06e-08!3;CL:0000473!8.83e-08!3;CL:0000627!8.83e-08!3;CL:0000682!8.83e-08!3;CL:0000838!1.20e-07!12;CL:0000542!5.59e-07!13;CL:0000051!5.59e-07!13 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.12e-46,9;CL:0002251,1.12e-46,9;CL:0000239,2.43e-31,6;CL:0000677,2.43e-31,6;CL:0000584,2.43e-31,6;CL:0000066,1.01e-28,25;CL:0002076,1.28e-27,15;CL:0000075,7.91e-27,7;CL:0000223,1.88e-20,20;CL:0002250,8.31e-17,3;CL:0000682,5.04e-16,3;CL:0000473,3.60e-07,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!3.20e-27!15;UBERON:0001242!1.25e-23!13;UBERON:0000060!1.25e-23!13;UBERON:0001262!1.25e-23!13;UBERON:0004786!1.25e-23!13;UBERON:0003350!6.76e-21!9;UBERON:0004808!6.76e-21!9;UBERON:0001277!6.76e-21!9;UBERON:0004923!7.00e-18!24;UBERON:0000485!9.91e-17!11;UBERON:0000160!1.48e-12!43;UBERON:0005409!3.88e-10!59 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003350,1.12e-46,9;UBERON:0004808,1.12e-46,9;UBERON:0001277,1.12e-46,9;UBERON:0000485,5.07e-38,11;UBERON:0001242,5.07e-32,13;UBERON:0001262,5.07e-32,13;UBERON:0004786,5.07e-32,13;UBERON:0000344,1.28e-27,15;UBERON:0004923,7.31e-17,24;UBERON:0000160,8.69e-16,31;UBERON:0005409,5.94e-10,47;UBERON:0003929,2.94e-08,55 | |||
|phase1_expression=0,2.09385244583617,4.54999239389536,7.86406949397758,9.5170188689806,1.84667199103079,1.40167584357315,1.03298658753261,0.281577444303333,0,0,0,1.02720437958723,0.34968160967599,0,0,0,0,0,0.42438965179803,0,0.198581902401771,0,0.47997726838022,0.68822784320151,2.29692785646008,2.15380998079537,1.72376986148711,0.190023419456374,0.504060259519861,0.665191531965914,0,0,0,2.88851619751275,2.82598897109437,2.45003227514843,0.837063261473815,0,0,31.7645003536748,0.683045484958446,0,0,0,0,0,0,0,0,0,0,0.503347818173209,0,2.35265659399725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.679971333707751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22836775943812,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.766371165625774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.22237804384487,0,1.89811624617805,0.164698954724011,0,0,0,0,0,0.597423819763102,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.164549020602121,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0.170870880797853,0,0,0,0,0,0.509935289981566,0.559805809294632,0.690999869022119,0,0,0,0,0,0,0,0,0,0.518459893167171,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr1:36331417..36331462,+ | |||
}} |
Revision as of 20:17, 13 September 2013
Short description: | p@chr1:36331417..36331462, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr1:36331417..36331462, + |
Coexpression cluster: | MCL_coexpression_mm9:6 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.12e-46 | 9 |
epithelial cell of alimentary canal | 1.12e-46 | 9 |
brush border epithelial cell | 2.43e-31 | 6 |
gut absorptive cell | 2.43e-31 | 6 |
enterocyte | 2.43e-31 | 6 |
epithelial cell | 1.01e-28 | 25 |
endo-epithelial cell | 1.28e-27 | 15 |
columnar/cuboidal epithelial cell | 7.91e-27 | 7 |
endodermal cell | 1.88e-20 | 20 |
intestinal crypt stem cell | 8.31e-17 | 3 |
M cell of gut | 5.04e-16 | 3 |
defensive cell | 3.60e-07 | 7 |
Ontology term | p-value | n |
---|---|---|
epithelium of mucosa | 1.12e-46 | 9 |
gastrointestinal system epithelium | 1.12e-46 | 9 |
intestinal epithelium | 1.12e-46 | 9 |
simple columnar epithelium | 5.07e-38 | 11 |
intestinal mucosa | 5.07e-32 | 13 |
wall of intestine | 5.07e-32 | 13 |
gastrointestinal system mucosa | 5.07e-32 | 13 |
mucosa | 1.28e-27 | 15 |
organ component layer | 7.31e-17 | 24 |
intestine | 8.69e-16 | 31 |
gastrointestinal system | 5.94e-10 | 47 |
gut epithelium | 2.94e-08 | 55 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.