FFCP PHASE1:Mm9::chr2:13415278..13415284,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=58|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr2:13415278..13415284,-|id=chr2:13415278..13415284,-|ontology_enrichment_celltype=CL:0000239!3.40e-19!6;CL:0000677!3.40e-19!6;CL:0000212!3.40e-19!6;CL:0000584!3.40e-19!6;CL:0002563!9.46e-18!9;CL:0002251!9.46e-18!9;CL:0000075!1.95e-16!7;CL:0000473!1.17e-14!3;CL:0000627!1.17e-14!3;CL:0000682!1.17e-14!3;CL:0000066!1.33e-13!25;CL:0002076!1.81e-10!15;CL:0000223!9.99e-08!20|ontology_enrichment_celltype_v019_2=CL:0000682,7.68e-33,3;CL:0000239,4.12e-17,6;CL:0000677,4.12e-17,6;CL:0000584,4.12e-17,6;CL:0000066,9.54e-16,25;CL:0000075,8.94e-15,7;CL:0000473,1.53e-14,7;CL:0002563,1.19e-11,9;CL:0002251,1.19e-11,9;CL:0002076,3.07e-07,15|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!5.85e-35!15;UBERON:0001242!1.07e-26!13;UBERON:0000060!1.07e-26!13;UBERON:0001262!1.07e-26!13;UBERON:0004786!1.07e-26!13;UBERON:0004923!3.12e-21!24;UBERON:0003350!9.46e-18!9;UBERON:0004808!9.46e-18!9;UBERON:0001277!9.46e-18!9;UBERON:0000160!2.31e-15!43;UBERON:0000485!1.91e-14!11;UBERON:0000331!9.11e-14!3;UBERON:0002116!9.11e-14!3;UBERON:0001204!9.11e-14!3;UBERON:0001168!9.11e-14!3;UBERON:0001962!1.19e-10!2;UBERON:0001961!1.19e-10!2;UBERON:0001744!1.19e-10!2;UBERON:0005409!1.26e-10!59;UBERON:0002465!2.27e-07!3|ontology_enrichment_uberon_v019_2=UBERON:0001962,3.06e-23,2;UBERON:0001961,3.06e-23,2;UBERON:0001744,3.06e-23,2;UBERON:0000344,1.26e-18,15;UBERON:0002465,7.42e-16,3;UBERON:0003199,1.20e-12,1;UBERON:0004923,9.57e-12,24;UBERON:0003350,1.19e-11,9;UBERON:0004808,1.19e-11,9;UBERON:0001277,1.19e-11,9;UBERON:0000485,1.19e-09,11;UBERON:0001242,2.91e-08,13;UBERON:0001262,2.91e-08,13;UBERON:0004786,2.91e-08,13|phase1_expression=0,8.02643437570531,7.73498706962211,0.60492842261366,0,1.6787927191189,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,5.27974995218242,8.71755268055246,3.44539178469012,4.30761996159075,3.23206849028834,0.950117097281869,0.252030129759931,0.221730510655305,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.766371165625774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr2:13415278..13415284,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr2:13415278..13415284,- | |||
|id=chr2:13415278..13415284,- | |||
|ontology_enrichment_celltype=CL:0000239!3.40e-19!6;CL:0000677!3.40e-19!6;CL:0000212!3.40e-19!6;CL:0000584!3.40e-19!6;CL:0002563!9.46e-18!9;CL:0002251!9.46e-18!9;CL:0000075!1.95e-16!7;CL:0000473!1.17e-14!3;CL:0000627!1.17e-14!3;CL:0000682!1.17e-14!3;CL:0000066!1.33e-13!25;CL:0002076!1.81e-10!15;CL:0000223!9.99e-08!20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,7.68e-33,3;CL:0000239,4.12e-17,6;CL:0000677,4.12e-17,6;CL:0000584,4.12e-17,6;CL:0000066,9.54e-16,25;CL:0000075,8.94e-15,7;CL:0000473,1.53e-14,7;CL:0002563,1.19e-11,9;CL:0002251,1.19e-11,9;CL:0002076,3.07e-07,15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!5.85e-35!15;UBERON:0001242!1.07e-26!13;UBERON:0000060!1.07e-26!13;UBERON:0001262!1.07e-26!13;UBERON:0004786!1.07e-26!13;UBERON:0004923!3.12e-21!24;UBERON:0003350!9.46e-18!9;UBERON:0004808!9.46e-18!9;UBERON:0001277!9.46e-18!9;UBERON:0000160!2.31e-15!43;UBERON:0000485!1.91e-14!11;UBERON:0000331!9.11e-14!3;UBERON:0002116!9.11e-14!3;UBERON:0001204!9.11e-14!3;UBERON:0001168!9.11e-14!3;UBERON:0001962!1.19e-10!2;UBERON:0001961!1.19e-10!2;UBERON:0001744!1.19e-10!2;UBERON:0005409!1.26e-10!59;UBERON:0002465!2.27e-07!3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001962,3.06e-23,2;UBERON:0001961,3.06e-23,2;UBERON:0001744,3.06e-23,2;UBERON:0000344,1.26e-18,15;UBERON:0002465,7.42e-16,3;UBERON:0003199,1.20e-12,1;UBERON:0004923,9.57e-12,24;UBERON:0003350,1.19e-11,9;UBERON:0004808,1.19e-11,9;UBERON:0001277,1.19e-11,9;UBERON:0000485,1.19e-09,11;UBERON:0001242,2.91e-08,13;UBERON:0001262,2.91e-08,13;UBERON:0004786,2.91e-08,13 | |||
|phase1_expression=0,8.02643437570531,7.73498706962211,0.60492842261366,0,1.6787927191189,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,0.17008658030214,0,0,5.27974995218242,8.71755268055246,3.44539178469012,4.30761996159075,3.23206849028834,0.950117097281869,0.252030129759931,0.221730510655305,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.766371165625774,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190225626112559,0,0,0,0,0,0,0,0.199141273254367,0,0,0,0,0,0.0701358198903186,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.291480836629851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr2:13415278..13415284,- | |||
}} |
Revision as of 22:10, 13 September 2013
Short description: | p@chr2:13415278..13415284, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr2:13415278..13415284, - |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 7.68e-33 | 3 |
brush border epithelial cell | 4.12e-17 | 6 |
gut absorptive cell | 4.12e-17 | 6 |
enterocyte | 4.12e-17 | 6 |
epithelial cell | 9.54e-16 | 25 |
columnar/cuboidal epithelial cell | 8.94e-15 | 7 |
defensive cell | 1.53e-14 | 7 |
intestinal epithelial cell | 1.19e-11 | 9 |
epithelial cell of alimentary canal | 1.19e-11 | 9 |
endo-epithelial cell | 3.07e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
gut-associated lymphoid tissue | 3.06e-23 | 2 |
mucosa-associated lymphoid tissue | 3.06e-23 | 2 |
lymphoid tissue | 3.06e-23 | 2 |
mucosa | 1.26e-18 | 15 |
lymphoid system | 7.42e-16 | 3 |
egg chamber | 1.20e-12 | 1 |
organ component layer | 9.57e-12 | 24 |
epithelium of mucosa | 1.19e-11 | 9 |
gastrointestinal system epithelium | 1.19e-11 | 9 |
intestinal epithelium | 1.19e-11 | 9 |
simple columnar epithelium | 1.19e-09 | 11 |
intestinal mucosa | 2.91e-08 | 13 |
wall of intestine | 2.91e-08 | 13 |
gastrointestinal system mucosa | 2.91e-08 | 13 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.