FFCP PHASE1:Mm9::chr4:119329371..119329382,-: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr4:119329371..119329382,-|id=chr4:119329371..119329382,-|ontology_enrichment_celltype=CL:0000239!6.55e-17!6;CL:0000677!6.55e-17!6;CL:0000212!6.55e-17!6;CL:0000584!6.55e-17!6;CL:0000075!2.12e-14!7;CL:0002563!4.77e-11!9;CL:0002251!4.77e-11!9;CL:0000473!5.58e-09!3;CL:0000627!5.58e-09!3;CL:0000682!5.58e-09!3;CL:0000066!1.04e-07!25|ontology_enrichment_celltype_v019_2=CL:0000239,3.09e-09,6;CL:0000677,3.09e-09,6;CL:0000584,3.09e-09,6;CL:0000682,5.02e-08,3;CL:0000075,5.51e-08,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000160!5.34e-27!43;UBERON:0000344!1.59e-25!15;UBERON:0001242!3.04e-20!13;UBERON:0000060!3.04e-20!13;UBERON:0001262!3.04e-20!13;UBERON:0004786!3.04e-20!13;UBERON:0005409!2.30e-18!59;UBERON:0004923!5.48e-15!24;UBERON:0003350!4.77e-11!9;UBERON:0004808!4.77e-11!9;UBERON:0001277!4.77e-11!9;UBERON:0000331!4.34e-09!3;UBERON:0002116!4.34e-09!3;UBERON:0001204!4.34e-09!3;UBERON:0001168!4.34e-09!3;UBERON:0000485!6.52e-09!11;UBERON:0001007!1.16e-07!128;UBERON:0001555!1.16e-07!128;UBERON:0007026!1.16e-07!128;UBERON:0004119!1.82e-07!130;UBERON:0000925!1.82e-07!130;UBERON:0006595!1.82e-07!130;UBERON:0001962!3.68e-07!2;UBERON:0001961!3.68e-07!2;UBERON:0001744!3.68e-07!2|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.45e-20,31;UBERON:0000344,6.40e-18,15;UBERON:0005409,7.69e-13,47;UBERON:0001962,1.77e-12,2;UBERON:0001961,1.77e-12,2;UBERON:0001744,1.77e-12,2;UBERON:0004923,5.73e-11,24;UBERON:0001242,8.62e-11,13;UBERON:0001262,8.62e-11,13;UBERON:0004786,8.62e-11,13;UBERON:0002465,1.31e-08,3;UBERON:0000331,3.32e-08,3;UBERON:0002116,3.32e-08,3;UBERON:0001204,3.32e-08,3;UBERON:0001168,3.32e-08,3;UBERON:0006834,3.14e-07,1;UBERON:0003199,5.34e-07,1|phase1_expression=0,3.48975407639361,0.909998478779072,1.81478526784098,7.51343594919521,0.503637815735669,0.700837921786577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.87986361028132,2.52350209173887,1.14846392823004,1.7230479846363,0.646413698057667,1.90023419456374,0.504060259519861,1.33038306393183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0,0,0,0,0,0,0.220841518460394,0,0,0,0,1.02182822083437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348252166522167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.991256348951394,1.85115396664481,0,0,0,0,0,0.380451252225118,2.84717436926707,0.658795818896044,1.00534083520108,0.397912944082302,0.19496408711912,1.79763881730844,0.648414149624083,1.99141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.874442509889552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.44279178808428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214871054048298,0,0,0|short_description=p@chr4:119329371..119329382,-}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr4:119329371..119329382,- | |||
|id=chr4:119329371..119329382,- | |||
|ontology_enrichment_celltype=CL:0000239!6.55e-17!6;CL:0000677!6.55e-17!6;CL:0000212!6.55e-17!6;CL:0000584!6.55e-17!6;CL:0000075!2.12e-14!7;CL:0002563!4.77e-11!9;CL:0002251!4.77e-11!9;CL:0000473!5.58e-09!3;CL:0000627!5.58e-09!3;CL:0000682!5.58e-09!3;CL:0000066!1.04e-07!25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000239,3.09e-09,6;CL:0000677,3.09e-09,6;CL:0000584,3.09e-09,6;CL:0000682,5.02e-08,3;CL:0000075,5.51e-08,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!5.34e-27!43;UBERON:0000344!1.59e-25!15;UBERON:0001242!3.04e-20!13;UBERON:0000060!3.04e-20!13;UBERON:0001262!3.04e-20!13;UBERON:0004786!3.04e-20!13;UBERON:0005409!2.30e-18!59;UBERON:0004923!5.48e-15!24;UBERON:0003350!4.77e-11!9;UBERON:0004808!4.77e-11!9;UBERON:0001277!4.77e-11!9;UBERON:0000331!4.34e-09!3;UBERON:0002116!4.34e-09!3;UBERON:0001204!4.34e-09!3;UBERON:0001168!4.34e-09!3;UBERON:0000485!6.52e-09!11;UBERON:0001007!1.16e-07!128;UBERON:0001555!1.16e-07!128;UBERON:0007026!1.16e-07!128;UBERON:0004119!1.82e-07!130;UBERON:0000925!1.82e-07!130;UBERON:0006595!1.82e-07!130;UBERON:0001962!3.68e-07!2;UBERON:0001961!3.68e-07!2;UBERON:0001744!3.68e-07!2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.45e-20,31;UBERON:0000344,6.40e-18,15;UBERON:0005409,7.69e-13,47;UBERON:0001962,1.77e-12,2;UBERON:0001961,1.77e-12,2;UBERON:0001744,1.77e-12,2;UBERON:0004923,5.73e-11,24;UBERON:0001242,8.62e-11,13;UBERON:0001262,8.62e-11,13;UBERON:0004786,8.62e-11,13;UBERON:0002465,1.31e-08,3;UBERON:0000331,3.32e-08,3;UBERON:0002116,3.32e-08,3;UBERON:0001204,3.32e-08,3;UBERON:0001168,3.32e-08,3;UBERON:0006834,3.14e-07,1;UBERON:0003199,5.34e-07,1 | |||
|phase1_expression=0,3.48975407639361,0.909998478779072,1.81478526784098,7.51343594919521,0.503637815735669,0.700837921786577,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.87986361028132,2.52350209173887,1.14846392823004,1.7230479846363,0.646413698057667,1.90023419456374,0.504060259519861,1.33038306393183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.140444420131752,0,0,0,0,0,0,0,0,0,0,0.34255163915718,0,0,0,0,0,0,0,0,0,0,0,0,0.220841518460394,0,0,0,0,1.02182822083437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.348252166522167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.991256348951394,1.85115396664481,0,0,0,0,0,0.380451252225118,2.84717436926707,0.658795818896044,1.00534083520108,0.397912944082302,0.19496408711912,1.79763881730844,0.648414149624083,1.99141273254367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.874442509889552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.44279178808428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214871054048298,0,0,0 | |||
|short_description=p@chr4:119329371..119329382,- | |||
}} |
Revision as of 03:37, 14 September 2013
Short description: | p@chr4:119329371..119329382, - |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr4:119329371..119329382, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
brush border epithelial cell | 3.09e-09 | 6 |
gut absorptive cell | 3.09e-09 | 6 |
enterocyte | 3.09e-09 | 6 |
M cell of gut | 5.02e-08 | 3 |
columnar/cuboidal epithelial cell | 5.51e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
intestine | 3.45e-20 | 31 |
mucosa | 6.40e-18 | 15 |
gastrointestinal system | 7.69e-13 | 47 |
gut-associated lymphoid tissue | 1.77e-12 | 2 |
mucosa-associated lymphoid tissue | 1.77e-12 | 2 |
lymphoid tissue | 1.77e-12 | 2 |
organ component layer | 5.73e-11 | 24 |
intestinal mucosa | 8.62e-11 | 13 |
wall of intestine | 8.62e-11 | 13 |
gastrointestinal system mucosa | 8.62e-11 | 13 |
lymphoid system | 1.31e-08 | 3 |
ileal mucosa | 3.32e-08 | 3 |
ileum | 3.32e-08 | 3 |
mucosa of small intestine | 3.32e-08 | 3 |
wall of small intestine | 3.32e-08 | 3 |
uterus or analog | 3.14e-07 | 1 |
egg chamber | 5.34e-07 | 1 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.