FFCP PHASE1:Mm9::chr5:20981015..20981019,+: Difference between revisions
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{{FFCP | {{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=58|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr5:20981015..20981019,+|id=chr5:20981015..20981019,+|ontology_enrichment_celltype=CL:0000473!2.05e-16!3;CL:0000627!2.05e-16!3;CL:0000682!2.05e-16!3;CL:0002563!4.84e-14!9;CL:0002251!4.84e-14!9;CL:0000239!5.68e-14!6;CL:0000677!5.68e-14!6;CL:0000212!5.68e-14!6;CL:0000584!5.68e-14!6;CL:0000066!3.04e-12!25;CL:0000075!5.29e-12!7;CL:0002076!2.31e-08!15|ontology_enrichment_celltype_v019_2=CL:0000682,1.68e-27,3;CL:0000239,1.10e-23,6;CL:0000677,1.10e-23,6;CL:0000584,1.10e-23,6;CL:0000075,2.26e-20,7;CL:0000066,4.14e-17,25;CL:0002563,6.05e-16,9;CL:0002251,6.05e-16,9;CL:0000473,3.41e-12,7;CL:0002076,1.03e-09,15;CL:0000223,2.34e-07,20|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!1.01e-20!15;UBERON:0003350!4.84e-14!9;UBERON:0004808!4.84e-14!9;UBERON:0001277!4.84e-14!9;UBERON:0001242!1.27e-13!13;UBERON:0000060!1.27e-13!13;UBERON:0001262!1.27e-13!13;UBERON:0004786!1.27e-13!13;UBERON:0004923!1.33e-12!24;UBERON:0000485!1.82e-11!11;UBERON:0001962!3.10e-11!2;UBERON:0001961!3.10e-11!2;UBERON:0001744!3.10e-11!2;UBERON:0003929!3.67e-09!55;UBERON:0002465!9.02e-08!3;UBERON:0000064!1.12e-07!99;UBERON:0000490!2.31e-07!66;UBERON:0002370!5.25e-07!23;UBERON:0000974!5.25e-07!23;UBERON:0004807!5.25e-07!23;UBERON:0005058!5.25e-07!23;UBERON:0003351!5.25e-07!23;UBERON:0009113!5.25e-07!23;UBERON:0003295!5.25e-07!23;UBERON:0009722!5.25e-07!23;UBERON:0005562!5.25e-07!23;UBERON:0007690!5.25e-07!23;UBERON:0005911!5.69e-07!69|ontology_enrichment_uberon_v019_2=UBERON:0000344,4.12e-28,15;UBERON:0001962,1.94e-18,2;UBERON:0001961,1.94e-18,2;UBERON:0001744,1.94e-18,2;UBERON:0004923,1.59e-17,24;UBERON:0001242,7.89e-17,13;UBERON:0001262,7.89e-17,13;UBERON:0004786,7.89e-17,13;UBERON:0003350,6.05e-16,9;UBERON:0004808,6.05e-16,9;UBERON:0001277,6.05e-16,9;UBERON:0000485,4.05e-13,11;UBERON:0002465,1.24e-12,3;UBERON:0003199,3.04e-10,1;UBERON:0000160,4.14e-07,31|phase1_expression=0,3.83872948403297,6.3699893514535,0,0,3.18970616632591,4.20502753071946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19984845586813,6.19405058881359,3.44539178469012,6.46142994238612,10.5580904016086,0,0,1.10865255327652,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0.179026695667481,0,0,0.147689527174577,0,0.0762068066549998,0.201652370273681,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr5:20981015..20981019,+}} | ||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=58 | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|description=CAGE_peak_at_chr5:20981015..20981019,+ | |||
|id=chr5:20981015..20981019,+ | |||
|ontology_enrichment_celltype=CL:0000473!2.05e-16!3;CL:0000627!2.05e-16!3;CL:0000682!2.05e-16!3;CL:0002563!4.84e-14!9;CL:0002251!4.84e-14!9;CL:0000239!5.68e-14!6;CL:0000677!5.68e-14!6;CL:0000212!5.68e-14!6;CL:0000584!5.68e-14!6;CL:0000066!3.04e-12!25;CL:0000075!5.29e-12!7;CL:0002076!2.31e-08!15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000682,1.68e-27,3;CL:0000239,1.10e-23,6;CL:0000677,1.10e-23,6;CL:0000584,1.10e-23,6;CL:0000075,2.26e-20,7;CL:0000066,4.14e-17,25;CL:0002563,6.05e-16,9;CL:0002251,6.05e-16,9;CL:0000473,3.41e-12,7;CL:0002076,1.03e-09,15;CL:0000223,2.34e-07,20 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!1.01e-20!15;UBERON:0003350!4.84e-14!9;UBERON:0004808!4.84e-14!9;UBERON:0001277!4.84e-14!9;UBERON:0001242!1.27e-13!13;UBERON:0000060!1.27e-13!13;UBERON:0001262!1.27e-13!13;UBERON:0004786!1.27e-13!13;UBERON:0004923!1.33e-12!24;UBERON:0000485!1.82e-11!11;UBERON:0001962!3.10e-11!2;UBERON:0001961!3.10e-11!2;UBERON:0001744!3.10e-11!2;UBERON:0003929!3.67e-09!55;UBERON:0002465!9.02e-08!3;UBERON:0000064!1.12e-07!99;UBERON:0000490!2.31e-07!66;UBERON:0002370!5.25e-07!23;UBERON:0000974!5.25e-07!23;UBERON:0004807!5.25e-07!23;UBERON:0005058!5.25e-07!23;UBERON:0003351!5.25e-07!23;UBERON:0009113!5.25e-07!23;UBERON:0003295!5.25e-07!23;UBERON:0009722!5.25e-07!23;UBERON:0005562!5.25e-07!23;UBERON:0007690!5.25e-07!23;UBERON:0005911!5.69e-07!69 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,4.12e-28,15;UBERON:0001962,1.94e-18,2;UBERON:0001961,1.94e-18,2;UBERON:0001744,1.94e-18,2;UBERON:0004923,1.59e-17,24;UBERON:0001242,7.89e-17,13;UBERON:0001262,7.89e-17,13;UBERON:0004786,7.89e-17,13;UBERON:0003350,6.05e-16,9;UBERON:0004808,6.05e-16,9;UBERON:0001277,6.05e-16,9;UBERON:0000485,4.05e-13,11;UBERON:0002465,1.24e-12,3;UBERON:0003199,3.04e-10,1;UBERON:0000160,4.14e-07,31 | |||
|phase1_expression=0,3.83872948403297,6.3699893514535,0,0,3.18970616632591,4.20502753071946,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.19984845586813,6.19405058881359,3.44539178469012,6.46142994238612,10.5580904016086,0,0,1.10865255327652,0,0,0,0,0,0.204169356262369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0937017245597288,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.316011120628178,0,0,0,0.179026695667481,0,0,0.147689527174577,0,0.0762068066549998,0.201652370273681,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr5:20981015..20981019,+ | |||
}} |
Revision as of 07:13, 14 September 2013
Short description: | p@chr5:20981015..20981019, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr5:20981015..20981019, + |
Coexpression cluster: | MCL_coexpression_mm9:58 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
M cell of gut | 1.68e-27 | 3 |
brush border epithelial cell | 1.10e-23 | 6 |
gut absorptive cell | 1.10e-23 | 6 |
enterocyte | 1.10e-23 | 6 |
columnar/cuboidal epithelial cell | 2.26e-20 | 7 |
epithelial cell | 4.14e-17 | 25 |
intestinal epithelial cell | 6.05e-16 | 9 |
epithelial cell of alimentary canal | 6.05e-16 | 9 |
defensive cell | 3.41e-12 | 7 |
endo-epithelial cell | 1.03e-09 | 15 |
endodermal cell | 2.34e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
mucosa | 4.12e-28 | 15 |
gut-associated lymphoid tissue | 1.94e-18 | 2 |
mucosa-associated lymphoid tissue | 1.94e-18 | 2 |
lymphoid tissue | 1.94e-18 | 2 |
organ component layer | 1.59e-17 | 24 |
intestinal mucosa | 7.89e-17 | 13 |
wall of intestine | 7.89e-17 | 13 |
gastrointestinal system mucosa | 7.89e-17 | 13 |
epithelium of mucosa | 6.05e-16 | 9 |
gastrointestinal system epithelium | 6.05e-16 | 9 |
intestinal epithelium | 6.05e-16 | 9 |
simple columnar epithelium | 4.05e-13 | 11 |
lymphoid system | 1.24e-12 | 3 |
egg chamber | 3.04e-10 | 1 |
intestine | 4.14e-07 | 31 |
Property "Dpi dataset" (as page type) with input value "{{{DPIdataset}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "TSS like by RIKEN classifier" (as page type) with input value "{{{TSSclassifier}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.
Property "DHS support" (as page type) with input value "{{{DHSsupport}}}" contains invalid characters or is incomplete and therefore can cause unexpected results during a query or annotation process.