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MCL coexpression mm9:213: Difference between revisions

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{{MCL_coexpression_mm9
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|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0001048!5.98e-12!134;UBERON:0000464!1.12e-08!57;UBERON:0001041!4.39e-08!80;UBERON:0000466!6.72e-08!79;UBERON:0000475!1.03e-07!150;UBERON:0002553!1.64e-07!39;UBERON:0003886!3.84e-07!38;UBERON:0002323!9.06e-07!37;UBERON:0004458!9.06e-07!37
|tfbs_overrepresentation_for_novel_motifs=0.029535,0.00193078,0.0235559,0.651496,0.390332,0.692606,0.0788418,0.159542,0.178125,2.87944e-05,0.0614022,0.546192,0.00127524,0.0841113,0.439228,0,0.187606,0.367872,0.235723,0.0575628,0.628368,0.000753676,0.0837172,0.875652,0.488173,0.096558,0.0211236,0.052199,0.0118565,0.0258961,0.0475297,0.254839,0.00577015,0.0405589,0.00839532,0.0482498,0.00502758,0.0723691,0.676778,0.0458436,0.862789,0.0492143,0.17367,1.32396,0.013236,0.0376974,0.433865,0.0577101,0.468933,0.158709,0.176803,0.109513,0.105392,0.360169,0.373892,0.0872623,1.19428,0.242289,0.00455301,0.0863573,0.240935,0.11424,0.104053,0.169971,0.0922836,0.195024,0.485685,0.798123,0.237731,0.662985,0.0197467,0.459077,0.000174129,1.03513,0.000503664,0.00300697,0.418788,0.827872,0.649104,0.0784616,0.17341,0.198598,1.20837,1.0842,0.310872,2.05978e-06,0.0454333,0.0259733,0.143201,0.951017,0.545507,0.314605,0.729443,1.24007,0.0199012,0.380139,0.154889,0.734024,0.140611,0.00501524,1.07779,0.254643,0.346608,0.524831,0.176523,0.0490695,0.214471,0.205983,0.0181085,0.0168212,0.279373,0.347988,0.0174419,0.0633371,0.55164,0.210014,1.04527e-05,0.04205,0.188421,1.05402,1.04464,0.926948,0.0974115,0.133725,0.599219,0.23174,0.992284,0.259075,0.484401,0.23743,0.333543,0.0387959,1.16273,1.07202,0.570528,0.0204807,0.558853,0.186132,0.527732,1.30753,0.920727,0.489678,0.103141,0.262212,0.172583,0.413938,0.438249,1.26872,0.308995,0.00683283,0.00212864,6.24355e-06,0.361398,0.60297,0.0930116,0.426918,0.110013,0.0488654,1.22079,0.0315646,0.535953,0.310232,1.22229,0.114329,0.508757,0.624649,0.0839021,0.542882,2.59604e-05
|tfbs_overrepresentation_jaspar=MA0003.1;4.36505e-10,MA0004.1;0.652858,MA0006.1;0.00787508,MA0007.1;0.145681,MA0009.1;0.751761,MA0014.1;3.61282e-09,MA0017.1;0.773266,MA0019.1;0.154706,MA0024.1;0.242791,MA0025.1;0.455779,MA0027.1;1.80018,MA0028.1;0.00900897,MA0029.1;0.646159,MA0030.1;0.232422,MA0031.1;0.600763,MA0038.1;0.657551,MA0040.1;1.41066,MA0041.1;1.47269,MA0042.1;2.30751,MA0043.1;0.345831,MA0046.1;0.811325,MA0048.1;0.00012069,MA0050.1;0.19768,MA0051.1;0.677406,MA0052.1;1.43205,MA0055.1;3.40491e-06,MA0056.1;0,MA0057.1;0.00368796,MA0058.1;0.403066,MA0059.1;1.03862,MA0060.1;0.00221333,MA0061.1;0.0220562,MA0063.1;0,MA0066.1;0.305714,MA0067.1;0.55053,MA0068.1;0.0342857,MA0069.1;0.288758,MA0070.1;2.99905,MA0071.1;0.435841,MA0072.1;0.275571,MA0073.1;4.63122e-08,MA0074.1;0.262598,MA0076.1;0.0136554,MA0077.1;0.260121,MA0078.1;0.117056,MA0081.1;0.262387,MA0083.1;0.345218,MA0084.1;0.848546,MA0087.1;1.5182,MA0088.1;0.0486487,MA0089.1;0,MA0090.1;0.558812,MA0091.1;1.06681,MA0092.1;0.129162,MA0093.1;0.482746,MA0095.1;0,MA0098.1;0,MA0100.1;0.0711575,MA0101.1;0.0971243,MA0103.1;0.1603,MA0105.1;0.000400862,MA0106.1;0.121061,MA0107.1;0.0115922,MA0108.2;0.16815,MA0109.1;0,MA0111.1;0.329199,MA0113.1;0.346942,MA0114.1;0.0670751,MA0115.1;0.347998,MA0116.1;0.00785365,MA0117.1;0.32327,MA0119.1;0.0224905,MA0122.1;0.338415,MA0124.1;1.25932,MA0125.1;0.442316,MA0130.1;0,MA0131.1;0.15209,MA0132.1;0,MA0133.1;0,MA0135.1;0.374324,MA0136.1;0.286183,MA0139.1;0.152204,MA0140.1;0.0711115,MA0141.1;0.0716366,MA0142.1;0.199374,MA0143.1;0.11498,MA0144.1;0.156705,MA0145.1;0.00454879,MA0146.1;2.57045e-06,MA0147.1;0.0799453,MA0148.1;1.07902,MA0149.1;3.60396,MA0062.2;0.000463942,MA0035.2;0.254517,MA0039.2;4.93118e-11,MA0138.2;0.147559,MA0002.2;0.274681,MA0137.2;0.894294,MA0104.2;0.0385161,MA0047.2;0.655857,MA0112.2;0.00454807,MA0065.2;0.0046104,MA0150.1;0.14558,MA0151.1;0,MA0152.1;0.656094,MA0153.1;1.00642,MA0154.1;0.00103391,MA0155.1;0.000397613,MA0156.1;0.0642495,MA0157.1;1.01581,MA0158.1;0,MA0159.1;0.0298686,MA0160.1;0.0469996,MA0161.1;0,MA0162.1;8.27003e-07,MA0163.1;4.54441e-07,MA0164.1;0.599537,MA0080.2;0.309438,MA0018.2;0.0887809,MA0099.2;0.144004,MA0079.2;0,MA0102.2;0.897953,MA0258.1;0.13171,MA0259.1;0.0708444,MA0442.1;0
}}

Latest revision as of 14:54, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr10:24624002..24624007,+p@chr10:24624002..24624007
+
Mm9::chr11:32582947..32582952,+p@chr11:32582947..32582952
+
Mm9::chr11:80202918..80202921,+p@chr11:80202918..80202921
+
Mm9::chr11:86162549..86162550,-p@chr11:86162549..86162550
-
Mm9::chr12:66162718..66162721,+p@chr12:66162718..66162721
+
Mm9::chr13:17835886..17835889,-p@chr13:17835886..17835889
-
Mm9::chr14:52699201..52699218,-p@chr14:52699201..52699218
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Mm9::chr14:65561117..65561122,-p@chr14:65561117..65561122
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Mm9::chr16:22252456..22252460,-p@chr16:22252456..22252460
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Mm9::chr16:22257899..22257906,-p@chr16:22257899..22257906
-
Mm9::chr16:22261150..22261154,-p@chr16:22261150..22261154
-
Mm9::chr16:32916376..32916381,+p@chr16:32916376..32916381
+
Mm9::chr16:4211456..4211464,-p@chr16:4211456..4211464
-
Mm9::chr17:22113364..22113372,+p@chr17:22113364..22113372
+
Mm9::chr18:7916016..7916032,+p@chr18:7916016..7916032
+
Mm9::chr18:81098144..81098148,-p@chr18:81098144..81098148
-
Mm9::chr19:30134870..30134874,+p@chr19:30134870..30134874
+
Mm9::chr1:107597981..107597985,+p@chr1:107597981..107597985
+
Mm9::chr1:145650783..145650787,+p@chr1:145650783..145650787
+
Mm9::chr1:178727446..178727451,-p@chr1:178727446..178727451
-
Mm9::chr1:63142570..63142574,-p@chr1:63142570..63142574
-
Mm9::chr2:17995566..17995570,+p@chr2:17995566..17995570
+
Mm9::chr2:60070577..60070582,+p@chr2:60070577..60070582
+
Mm9::chr3:108709898..108709902,-p@chr3:108709898..108709902
-
Mm9::chr4:120483014..120483018,-p@chr4:120483014..120483018
-
Mm9::chr4:59794243..59794247,-p@chr4:59794243..59794247
-
Mm9::chr5:3806058..3806062,+p3@Krit1
Mm9::chr5:66084492..66084496,-p@chr5:66084492..66084496
-
Mm9::chr6:120332056..120332061,+p@chr6:120332056..120332061
+
Mm9::chr6:38502892..38502896,+p3@Luc7l2
Mm9::chr6:38527036..38527041,+p@chr6:38527036..38527041
+
Mm9::chr6:71361580..71361589,-p@chr6:71361580..71361589
-
Mm9::chr6:71838776..71838777,-p@chr6:71838776..71838777
-
Mm9::chr6:72835419..72835423,-p@chr6:72835419..72835423
-
Mm9::chr6:86489702..86489706,+p@chr6:86489702..86489706
+
Mm9::chr7:26521974..26521979,-p@chr7:26521974..26521979
-
Mm9::chr7:38803040..38803044,-p@chr7:38803040..38803044
-
Mm9::chr7:52641168..52641172,-p@chr7:52641168..52641172
-
Mm9::chr7:80677158..80677162,-p@chr7:80677158..80677162
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Mm9::chr7:88176451..88176455,+p@chr7:88176451..88176455
+
Mm9::chr9:100747476..100747481,+p@chr9:100747476..100747481
+
Mm9::chr9:107718291..107718296,-p@chr9:107718291..107718296
-


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br><br>uberon_data<br><br>

Uber Anatomy
Ontology termp-valuen
primordium5.98e-12134
anatomical space1.12e-0857
foregut4.39e-0880
immaterial anatomical entity6.72e-0879
organism subdivision1.03e-07150
anatomical cavity1.64e-0739
body cavity precursor3.84e-0738
body cavity9.06e-0737
body cavity or lining9.06e-0737


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.14.36505e-10
MA0004.10.652858
MA0006.10.00787508
MA0007.10.145681
MA0009.10.751761
MA0014.13.61282e-09
MA0017.10.773266
MA0019.10.154706
MA0024.10.242791
MA0025.10.455779
MA0027.11.80018
MA0028.10.00900897
MA0029.10.646159
MA0030.10.232422
MA0031.10.600763
MA0038.10.657551
MA0040.11.41066
MA0041.11.47269
MA0042.12.30751
MA0043.10.345831
MA0046.10.811325
MA0048.10.00012069
MA0050.10.19768
MA0051.10.677406
MA0052.11.43205
MA0055.13.40491e-06
MA0056.10
MA0057.10.00368796
MA0058.10.403066
MA0059.11.03862
MA0060.10.00221333
MA0061.10.0220562
MA0063.10
MA0066.10.305714
MA0067.10.55053
MA0068.10.0342857
MA0069.10.288758
MA0070.12.99905
MA0071.10.435841
MA0072.10.275571
MA0073.14.63122e-08
MA0074.10.262598
MA0076.10.0136554
MA0077.10.260121
MA0078.10.117056
MA0081.10.262387
MA0083.10.345218
MA0084.10.848546
MA0087.11.5182
MA0088.10.0486487
MA0089.10
MA0090.10.558812
MA0091.11.06681
MA0092.10.129162
MA0093.10.482746
MA0095.10
MA0098.10
MA0100.10.0711575
MA0101.10.0971243
MA0103.10.1603
MA0105.10.000400862
MA0106.10.121061
MA0107.10.0115922
MA0108.20.16815
MA0109.10
MA0111.10.329199
MA0113.10.346942
MA0114.10.0670751
MA0115.10.347998
MA0116.10.00785365
MA0117.10.32327
MA0119.10.0224905
MA0122.10.338415
MA0124.11.25932
MA0125.10.442316
MA0130.10
MA0131.10.15209
MA0132.10
MA0133.10
MA0135.10.374324
MA0136.10.286183
MA0139.10.152204
MA0140.10.0711115
MA0141.10.0716366
MA0142.10.199374
MA0143.10.11498
MA0144.10.156705
MA0145.10.00454879
MA0146.12.57045e-06
MA0147.10.0799453
MA0148.11.07902
MA0149.13.60396
MA0062.20.000463942
MA0035.20.254517
MA0039.24.93118e-11
MA0138.20.147559
MA0002.20.274681
MA0137.20.894294
MA0104.20.0385161
MA0047.20.655857
MA0112.20.00454807
MA0065.20.0046104
MA0150.10.14558
MA0151.10
MA0152.10.656094
MA0153.11.00642
MA0154.10.00103391
MA0155.10.000397613
MA0156.10.0642495
MA0157.11.01581
MA0158.10
MA0159.10.0298686
MA0160.10.0469996
MA0161.10
MA0162.18.27003e-07
MA0163.14.54441e-07
MA0164.10.599537
MA0080.20.309438
MA0018.20.0887809
MA0099.20.144004
MA0079.20
MA0102.20.897953
MA0258.10.13171
MA0259.10.0708444
MA0442.10
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