Personal tools

MCL coexpression mm9:906: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
No edit summary
 
Line 1: Line 1:
{{MCL_coexpression_mm9
{{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=-0.0267923424579259,0.440877648163012,0.251321226962094,0.955358698927499,0.842025340904802,0.273931337468542,0.382994538389244,0.0842446692595628,-0.0347256731747274,-0.0418763255609233,-0.0418763255609233,-0.0377098098901,-0.0173121067907298,-0.0194798938937383,0.150560155312595,0.179393620489208,0.10757930835172,0.385204007283114,0.339271435717479,0.318065637028526,0.264934962358478,0.00826073498411994,0.00930611069639886,0.434819220524458,0.437808301023374,0.340422757189932,0.305230301657587,0.310281255746528,0.798702574798055,0.890318147338327,0.277165108146362,-0.0418763255609233,-0.0158525819933134,-0.0418763255609233,0.973627227792146,0.758220067816091,0.95463017303134,0.0706643452283122,0.131636458654597,0.103710960708783,0.0133295673032848,0.00487760419943674,0.0868484078310694,-0.0418763255609233,-0.036634328589818,-0.0418763255609233,0.0763313293544488,-0.0222301185730169,0.048028783434976,0.00974058375942868,0.041434291400254,-0.0418763255609233,0.326395179233972,0.0504702464650804,-0.00402325488105599,-0.0418763255609233,-0.0418763255609233,-0.0193006687958548,-0.0418763255609233,-0.0418763255609233,-0.0418763255609233,-0.0418763255609233,-0.0418763255609233,0.183964668713728,0.206128557625615,0.1790635070384,0.0972847266203733,0.0778161119182656,-0.0418763255609233,-0.0350015588413733,-0.0418763255609233,-0.00827621295825296,-0.00148676697496331,-0.0299809590174368,-0.0273872061353835,-0.0418763255609233,-0.0418763255609233,0.0301028189808603,0.0195933003362651,-0.0418763255609233,-0.0201945994777624,-0.019113265829333,0.041314016442664,0.030793599500212,0.0329550843997157,-0.0278581765565569,-0.0282742777711091,-0.0325974586660896,-0.0275122411647141,-0.0307833802375365,0.105075399070578,0.144216895697065,-0.0418763255609233,-0.0021339039587578,0.0305072349116685,-0.021779247316404,0.138531624330341,-0.0333331299835377,-0.0418763255609233,-0.0418763255609233,0.0935911910228884,-0.0418763255609233,-0.0418763255609233,-0.0418763255609233,-0.0205990968442387,0.0025503088268046,0.0403732148556461,0.304915249641632,0.444710391791187,0.150456414869871,-0.0331916176158948,-0.0418763255609233,-0.00206590867930553,-0.0113845997393592,-0.0008233326182866,0.0669752798924867,-0.0200683338138876,0.164029612656166,0.160058007376437,0.0505136290146906,0.0560568290260983,0.120597452997184,0.245377375583208,0.00628613098575536,-0.031552983520685,0.950237205815681,0.155338149003417,0.142392201401144,0.151020001647926,-0.00395170601781139,-0.0214252326791474,-0.0418763255609233,-0.00309421673966229,0.0431415796878947,-0.00532549145007228,-0.00963033508408358,0.0142502318601657,0.0997125099881471,0.114624782193935,0.0612364155304046,-0.0293196298984804,-0.0213394991281665,-0.0124274264758283,-0.00864526469641323,-0.00797291773008516,0.0121383047323488,-0.0115085512300532,0.0234019773725258,-0.0418763255609233,-0.0174816770663258,-0.00761365154578919,-0.00170296842958072,0.00437115019720741,-0.0256549347067183,-0.00346845947667226,0.0153290976980083,0.144884588899091,0.127428587324303,0.132582566852949,-0.0418763255609233,-0.0304387928087646,-0.0418763255609233,-0.0303413167619659,-0.000607952060993087,-0.0272781897547819,-0.0418763255609233,-0.0289747150112169,-0.013093595291906,-0.0336060989328455,-0.011885013879972,0.01361736542039,0.0259052494669985,0.0535159161082211,0.0448357072227011,0.0116874895876438,-0.0272707387774454,1.12583467101322,0.222671866939869,-0.0313808265712116,-0.00786602702516308,0.0293781382661642,0.0243124001802775,0.0767751901111041,0.142364484186056,0.354407879105925,0.105228153732723,0.218930057905466,0.185169383279772,0.261591908879554,0.261382661049019,0.349185387253366,0.43764123707617,-0.00180001366381754,-0.01147316329369,-0.000903415005356386,0.082855652045947,0.073516098732934,0.0837499153619908,0.147527425938393,0.157013026961118,0.167507074437899,0.21095534047675,0.15348438626247,-0.0418763255609233,-0.00697095022696958,-0.0217156510618531,0.00398280153592595,0.0010715525344147,-0.0195311162191434,0.0274993685283816,0.0413817000289489,0.0964530029584744,0.120645756865892,0.159921594986496,0.0926918441731813,0.0657684361827629,0.060924846159972,0.11789721046934,0.552785149973965,-0.0080214880790659,-0.00485380735272225,0.0106332209757774,0.0149559924915817,0.0216629077025298,0.078972669807933,0.075372626559201,0.205053954909327,0.245355386007888,0.2538616417717,0.389655367606555,0.31363016406097,0.372350652527799,0.362746744588382,0.30748630700418,0.147997777595504,0.148791982426313,0.019318525775513,-0.0108194938886469,0.0546459881666894,0.0370810546720923,-0.0121029340754142,-0.0418763255609233,-0.0418763255609233,-0.0418763255609233,-0.0309569556689661,-0.0418763255609233,-0.0234240996888608,-0.0279577618684363,-0.0237933518064319,0.0164437216680515,0.124390274205756,0.00620200394464755,0.00712242617706558,0.169134818879996,0.201530251050509,-0.0418763255609233,-0.0162038831430491,-0.0113596194945733,0.00661004548853012,-0.001306600295207,0.0626075083576063,-0.0122126628901979,0.00389554849157725,0.100749354361035,0.141524342575157,0.161580904452594,0.0806498789104294,-0.0251790848806685,-0.00819244827202996,-0.0149212632063211,0.0135002840745291,0.00653570608502631,0.00745073303483663,0.0416116275262331,0.0496097047520991,-0.00473982749077912,0.0822132160563239,0.163879422874937,0.0163421263923687,0.0432755974847216,0.0649393999563727,0.105936957031057,0.378316394841361,0.0247263916037967,0.279352456065644,0.042308467743857,0.0421808254131551,0.121846670999896,0.169170891238527,0.19935606989871,0.190289943430743,0.210994520256849,0.181931685245578,0.313972149556162,-0.0339048805520119,0.000479337392244887,0.00530017978824569,0.0278577348393063,0.0355417906578425,0.0412614081151386,0.128374633710264,0.140794125259643,0.355981749002956,0.152469640240245,-0.0176073911878059,0.00165753480243305,-0.00599077053520237,0.0168391983121532,-0.00413335951378369,0.00841165626914687,0.0203012893988291,0.00687176295685589,-0.0216146550593934,-0.0122854819992331,-0.00806796543095091,0.417052824478464,0.248016639864645,0.318471069910062,0.302860547295478,0.322188689465847,0.277861742757384,0.280094615071924,0.275522483094175,0.286028296935285,0.278099555555499,0.252051722837179,0.303267904367369,0.305431042462356,0.289876994033819,0.107012724472744,0.0307907494673871,-0.0242735077242238,-0.0197328417679545,0.171057928009319,0.189402724040461,0.215571962956465,0.154353718144743,0.17025157625392,-0.0418763255609233,-0.00644528336631988,-0.0418763255609233,-0.0106955495081348,0.0147789678037528,-0.0113295025356066,0.0182155581701781,-0.0418763255609233,-0.0215878033671523,-0.0192259265388014,-0.036515649116224,-0.0236481460703181,-0.0136179263548633,-0.0182492222733063,-0.0153915393901381,-0.0180312850028475,0.0167164704096057,-0.00558049079882,0.00984154069262896,0.0147670140194663,-0.0173470339705463,0.0261656872834373,0.0130365093766605,0.0100801025150011,-0.00144882514646904,0.0155965797491548,0.0446832568306885,0.0291457792892484,-0.00924310830638433,0.0169853755351945,0.0184808827763779,-0.00983483728441256,-0.00704871258382588,0.00736710767704399,0.0207094748410265,0.0155554811881566,0.0211169097067075,0.0323020563781648,0.0024158191408192,-0.0176960151300472,0.0108810465709848,0.00285771529534895,0.00160559511827489,0.00490336873866254,0.00435689768746376,0.0130140796420728,0.0544316413210683,0.0129302826090478,0.0137549884838441,0.0374191145863329,0.0473480012168987|coexpression_dpi_cluster_scores_median=0,0.374812541965839,0.221947893822551,0.939570011938875,0.793381594993783,0.220909281041545,0.333536012540613,0,0,0,0,0,0,0,0,0,0,0.084129859861042,0.0279020860741917,0,0.153106280842865,0,0,0.401169189647611,0.475149014432444,0.2645983963912,0.352461966204564,0.263833268597209,0.764585826935356,0.938631279606164,0.190434627270153,0,0,0,1.03177570342533,0.712075782947904,0.931066595746763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.055272043172713,0,0,0,0,0,0.125346668336851,0,0,0,0,0,0,0,0,0,0,0.255100480297832,0.357941141880739,0.0300545597055,0,0,0,0,0,0,0,0.110319863569628,0,0,0,0,0.228480260119283,0,0,0.968224106238893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0430998257964463,0,0,0,1.1770927768014,0.248891521923355,0,0,0,0,0,0.098043425305356,0.337141718919576,0.0662136857075299,0.0973736644748266,0.141036409786105,0.225192348419931,0.139241831090348,0.258577637711746,0.460961439647787,0,0,0,0.0805006992779881,0.0384935222863376,0.0294389011296462,0.0266298923127834,0.0298971899647678,0,0.0731640704872308,0.112756652096095,0,0,0,0,0,0,0,0,0.10536076625968,0,0,0,0,0.0358300855065507,0.085489078226422,0.421112830976558,0,0,0,0,0,0.0463679768904873,0,0.059507504784391,0.123062996466791,0.0642538110976656,0.353726674418046,0.155064609281699,0.336714826373178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0288216590713588,0,0,0.0663147875126409,0,0,0,0,0,0,0,0,0,0.0596340098159245,0,0,0,0,0,0,0,0,0,0,0.0233256667533105,0,0,0,0,0,0,0,0.363059837905097,0,0.0638344686817875,0,0,0.0374755578790873,0.055643654597214,0.0447367441903353,0,0,0,0.231897331272141,0,0,0.0222709268946923,0,0,0,0.0923568851569585,0.100975358632432,0.360307167084185,0,0,0,0,0,0,0,0,0,0,0,0,0.290534061368087,0.073907766449828,0,0,0.066458422198436,0.0726545746805335,0,0.0299122093309719,0.0608271539290338,0.0308041899510522,0.0398894237220457,0.099980008127235,0.143896423759131,0.139388180619654,0,0,0,0,0.0383547285828163,0.134336252040636,0.162863016520274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0375226752578547,0,0.0269518943326477,0,0,0.0238095886952444,0,0,0,0,0,0,0,0.0195303707501796,0.017637724668944,0,0,0,0,0,0,0,0,0,0,0.0430926821803413,0,0,0,0|gostat_on_MCL_coexpression=GO:0042613;MHC class II protein complex;0.0195077156806841;14999!GO:0051085;chaperone cofactor-dependent protein folding;0.0195077156806841;14999!GO:0006458;'de novo' protein folding;0.0195077156806841;14999!GO:0051084;'de novo' posttranslational protein folding;0.0195077156806841;14999!GO:0002495;antigen processing and presentation of peptide antigen via MHC class II;0.0195077156806841;14999!GO:0019886;antigen processing and presentation of exogenous peptide antigen via MHC class II;0.0195077156806841;14999!GO:0002478;antigen processing and presentation of exogenous peptide antigen;0.0195077156806841;14999!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0195077156806841;14999!GO:0019884;antigen processing and presentation of exogenous antigen;0.0209884571534992;14999!GO:0042611;MHC protein complex;0.0221723299436552;14999!GO:0048002;antigen processing and presentation of peptide antigen;0.0253775944494857;14999!GO:0019882;antigen processing and presentation;0.0389747969703214;14999!|ontology_enrichment_celltype=CL:0002563!2.97e-11!9;CL:0002251!2.97e-11!9;CL:0000239!1.03e-07!6;CL:0000677!1.03e-07!6;CL:0000212!1.03e-07!6;CL:0000584!1.03e-07!6|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0005409!3.42e-22!47;UBERON:0004119!8.26e-22!118;UBERON:0000925!8.26e-22!118;UBERON:0006595!8.26e-22!118;UBERON:0000160!9.17e-22!31;UBERON:0001007!1.13e-21!116;UBERON:0001555!1.13e-21!116;UBERON:0007026!1.13e-21!116;UBERON:0004921!7.02e-20!114;UBERON:0000344!5.39e-18!15;UBERON:0001242!1.01e-15!13;UBERON:0000060!1.01e-15!13;UBERON:0001262!1.01e-15!13;UBERON:0004786!1.01e-15!13;UBERON:0004923!1.15e-15!24;UBERON:0003350!2.97e-11!9;UBERON:0004808!2.97e-11!9;UBERON:0001277!2.97e-11!9;UBERON:0000485!1.07e-08!11;UBERON:0005911!3.25e-08!69|tfbs_overrepresentation_for_novel_motifs=0.393008,0.121181,0.367606,0.434198,0.260188,1.13872,0.538088,0.173246,0.181564,0.687027,0.494602,0.526159,0.173454,0.550255,0.275867,0,0.742571,0.252772,0.160384,0.29826,0.332107,0.223663,0.549359,0.717658,0.374936,0.577606,0.466037,0.469052,0.303071,0.376624,0.455168,0.843667,0.250677,0.136998,0.276324,1.66153,0.242032,0.522578,1.1836,0.195877,0.256422,0.460258,0.784847,0.761266,0.403938,0.423266,0.662995,0.484612,0.170971,0.305876,0.725127,0.604356,0.112729,0.985264,1.00271,0.557354,0.314394,0.513517,0.145699,0.555328,0.823643,0.613749,0.192045,0.713876,0.568415,0.754324,1.139,1.48833,0.818971,1.34113,0.349355,0.527912,0.0665967,1.03623,0.140213,0.131016,0.136938,0.651651,0.806481,0.336166,1.01677,0.759925,0.612313,0.501608,0.920903,0.025519,0.0299392,0.757533,0.667883,1.65055,1.20871,0.925879,0.856465,0.265734,0.218233,1.10739,0.1711,0.859272,0.663249,0.681235,0.679141,0.843387,0.967837,0.725721,0.724668,0.459825,0.784351,0.480639,0.340849,0.333829,0.386136,0.96962,0.337254,0.499714,2.72355,0.254749,0.0359654,0.437894,0.743872,0.670977,1.04163,0.692953,0.579418,1.56744,1.26989,0.810177,0.546178,0.849691,1.13749,0.268537,0.950857,0.427043,1.10792,0.570914,1.23736,0.061199,0.401212,0.461647,1.18819,2.01886,1.6187,1.14372,0.591394,0.854131,0.718197,0.460705,0.666107,1.9792,0.403515,0.261837,0.766041,0.0553085,0.986833,0.207643,0.569994,1.06851,0.605358,0.287226,0.39061,0.400939,1.1977,0.920047,0.810622,0.383936,0.714896,0.562634,0.676555,0.524587,0.0131724|tfbs_overrepresentation_jaspar=MA0003.1;0.0545917,MA0004.1;1.10905,MA0006.1;0.271714,MA0007.1;1.07722,MA0009.1;0.870101,MA0014.1;0.0611475,MA0017.1;0.296816,MA0019.1;0.688051,MA0024.1;0.826339,MA0025.1;1.10341,MA0027.1;2.51754,MA0028.1;0.281528,MA0029.1;0.804619,MA0030.1;0.811181,MA0031.1;0.775627,MA0038.1;0.577528,MA0040.1;0.882616,MA0041.1;0.360875,MA0042.1;0.919611,MA0043.1;0.966833,MA0046.1;0.906029,MA0048.1;0.102483,MA0050.1;3.06864,MA0051.1;3.57551,MA0052.1;0.890676,MA0055.1;0.0283571,MA0056.1;0,MA0057.1;0.31126,MA0058.1;2.45447,MA0059.1;2.51175,MA0060.1;0.197678,MA0061.1;0.224905,MA0063.1;0,MA0066.1;0.566617,MA0067.1;1.21448,MA0068.1;0.657844,MA0069.1;0.891016,MA0070.1;2.04375,MA0071.1;0.471969,MA0072.1;0.872842,MA0073.1;0.138438,MA0074.1;0.531046,MA0076.1;0.315013,MA0077.1;0.851175,MA0078.1;0.61926,MA0081.1;0.375851,MA0083.1;0.96604,MA0084.1;1.54225,MA0087.1;0.922929,MA0088.1;0.064239,MA0089.1;0,MA0090.1;0.401197,MA0091.1;0.447561,MA0092.1;0.401504,MA0093.1;1.43515,MA0095.1;0,MA0098.1;0,MA0100.1;0.519598,MA0101.1;0.362124,MA0103.1;0.307078,MA0105.1;0.133231,MA0106.1;0.626997,MA0107.1;0.814533,MA0108.2;1.69252,MA0109.1;0,MA0111.1;0.415012,MA0113.1;0.598933,MA0114.1;1.18683,MA0115.1;0.969632,MA0116.1;0.747001,MA0117.1;0.937363,MA0119.1;0.362692,MA0122.1;0.957212,MA0124.1;1.16127,MA0125.1;1.0872,MA0130.1;0,MA0131.1;0.683521,MA0132.1;0,MA0133.1;0,MA0135.1;1.00325,MA0136.1;0.550755,MA0139.1;0.169849,MA0140.1;0.519484,MA0141.1;0.325895,MA0142.1;0.761136,MA0143.1;0.615203,MA0144.1;0.225588,MA0145.1;0.246409,MA0146.1;0.0169049,MA0147.1;1.24068,MA0148.1;0.450593,MA0149.1;0.367458,MA0062.2;0.137653,MA0035.2;0.524137,MA0039.2;0.254826,MA0138.2;0.675599,MA0002.2;0.988033,MA0137.2;0.32312,MA0104.2;1.03907,MA0047.2;0.576767,MA0112.2;0.2464,MA0065.2;0.0704227,MA0150.1;0.419883,MA0151.1;0,MA0152.1;0.576873,MA0153.1;1.01988,MA0154.1;0.100744,MA0155.1;0.0804339,MA0156.1;0.314185,MA0157.1;0.729116,MA0158.1;0,MA0159.1;0.246253,MA0160.1;0.453546,MA0161.1;0,MA0162.1;0.0211019,MA0163.1;0.0186439,MA0164.1;0.551114,MA0080.2;0.302064,MA0018.2;0.560731,MA0099.2;0.669311,MA0079.2;0.685525,MA0102.2;1.59466,MA0258.1;0.60477,MA0259.1;0.643936,MA0442.1;0}}
|coexpression_dpi_cluster_scores_mean=-0.0267923424579259,0.440877648163012,0.251321226962094,0.955358698927499,0.842025340904802,0.273931337468542,0.382994538389244,0.0842446692595628,-0.0347256731747274,-0.0418763255609233,-0.0418763255609233,-0.0377098098901,-0.0173121067907298,-0.0194798938937383,0.150560155312595,0.179393620489208,0.10757930835172,0.385204007283114,0.339271435717479,0.318065637028526,0.264934962358478,0.00826073498411994,0.00930611069639886,0.434819220524458,0.437808301023374,0.340422757189932,0.305230301657587,0.310281255746528,0.798702574798055,0.890318147338327,0.277165108146362,-0.0418763255609233,-0.0158525819933134,-0.0418763255609233,0.973627227792146,0.758220067816091,0.95463017303134,0.0706643452283122,0.131636458654597,0.103710960708783,0.0133295673032848,0.00487760419943674,0.0868484078310694,-0.0418763255609233,-0.036634328589818,-0.0418763255609233,0.0763313293544488,-0.0222301185730169,0.048028783434976,0.00974058375942868,0.041434291400254,-0.0418763255609233,0.326395179233972,0.0504702464650804,-0.00402325488105599,-0.0418763255609233,-0.0418763255609233,-0.0193006687958548,-0.0418763255609233,-0.0418763255609233,-0.0418763255609233,-0.0418763255609233,-0.0418763255609233,0.183964668713728,0.206128557625615,0.1790635070384,0.0972847266203733,0.0778161119182656,-0.0418763255609233,-0.0350015588413733,-0.0418763255609233,-0.00827621295825296,-0.00148676697496331,-0.0299809590174368,-0.0273872061353835,-0.0418763255609233,-0.0418763255609233,0.0301028189808603,0.0195933003362651,-0.0418763255609233,-0.0201945994777624,-0.019113265829333,0.041314016442664,0.030793599500212,0.0329550843997157,-0.0278581765565569,-0.0282742777711091,-0.0325974586660896,-0.0275122411647141,-0.0307833802375365,0.105075399070578,0.144216895697065,-0.0418763255609233,-0.0021339039587578,0.0305072349116685,-0.021779247316404,0.138531624330341,-0.0333331299835377,-0.0418763255609233,-0.0418763255609233,0.0935911910228884,-0.0418763255609233,-0.0418763255609233,-0.0418763255609233,-0.0205990968442387,0.0025503088268046,0.0403732148556461,0.304915249641632,0.444710391791187,0.150456414869871,-0.0331916176158948,-0.0418763255609233,-0.00206590867930553,-0.0113845997393592,-0.0008233326182866,0.0669752798924867,-0.0200683338138876,0.164029612656166,0.160058007376437,0.0505136290146906,0.0560568290260983,0.120597452997184,0.245377375583208,0.00628613098575536,-0.031552983520685,0.950237205815681,0.155338149003417,0.142392201401144,0.151020001647926,-0.00395170601781139,-0.0214252326791474,-0.0418763255609233,-0.00309421673966229,0.0431415796878947,-0.00532549145007228,-0.00963033508408358,0.0142502318601657,0.0997125099881471,0.114624782193935,0.0612364155304046,-0.0293196298984804,-0.0213394991281665,-0.0124274264758283,-0.00864526469641323,-0.00797291773008516,0.0121383047323488,-0.0115085512300532,0.0234019773725258,-0.0418763255609233,-0.0174816770663258,-0.00761365154578919,-0.00170296842958072,0.00437115019720741,-0.0256549347067183,-0.00346845947667226,0.0153290976980083,0.144884588899091,0.127428587324303,0.132582566852949,-0.0418763255609233,-0.0304387928087646,-0.0418763255609233,-0.0303413167619659,-0.000607952060993087,-0.0272781897547819,-0.0418763255609233,-0.0289747150112169,-0.013093595291906,-0.0336060989328455,-0.011885013879972,0.01361736542039,0.0259052494669985,0.0535159161082211,0.0448357072227011,0.0116874895876438,-0.0272707387774454,1.12583467101322,0.222671866939869,-0.0313808265712116,-0.00786602702516308,0.0293781382661642,0.0243124001802775,0.0767751901111041,0.142364484186056,0.354407879105925,0.105228153732723,0.218930057905466,0.185169383279772,0.261591908879554,0.261382661049019,0.349185387253366,0.43764123707617,-0.00180001366381754,-0.01147316329369,-0.000903415005356386,0.082855652045947,0.073516098732934,0.0837499153619908,0.147527425938393,0.157013026961118,0.167507074437899,0.21095534047675,0.15348438626247,-0.0418763255609233,-0.00697095022696958,-0.0217156510618531,0.00398280153592595,0.0010715525344147,-0.0195311162191434,0.0274993685283816,0.0413817000289489,0.0964530029584744,0.120645756865892,0.159921594986496,0.0926918441731813,0.0657684361827629,0.060924846159972,0.11789721046934,0.552785149973965,-0.0080214880790659,-0.00485380735272225,0.0106332209757774,0.0149559924915817,0.0216629077025298,0.078972669807933,0.075372626559201,0.205053954909327,0.245355386007888,0.2538616417717,0.389655367606555,0.31363016406097,0.372350652527799,0.362746744588382,0.30748630700418,0.147997777595504,0.148791982426313,0.019318525775513,-0.0108194938886469,0.0546459881666894,0.0370810546720923,-0.0121029340754142,-0.0418763255609233,-0.0418763255609233,-0.0418763255609233,-0.0309569556689661,-0.0418763255609233,-0.0234240996888608,-0.0279577618684363,-0.0237933518064319,0.0164437216680515,0.124390274205756,0.00620200394464755,0.00712242617706558,0.169134818879996,0.201530251050509,-0.0418763255609233,-0.0162038831430491,-0.0113596194945733,0.00661004548853012,-0.001306600295207,0.0626075083576063,-0.0122126628901979,0.00389554849157725,0.100749354361035,0.141524342575157,0.161580904452594,0.0806498789104294,-0.0251790848806685,-0.00819244827202996,-0.0149212632063211,0.0135002840745291,0.00653570608502631,0.00745073303483663,0.0416116275262331,0.0496097047520991,-0.00473982749077912,0.0822132160563239,0.163879422874937,0.0163421263923687,0.0432755974847216,0.0649393999563727,0.105936957031057,0.378316394841361,0.0247263916037967,0.279352456065644,0.042308467743857,0.0421808254131551,0.121846670999896,0.169170891238527,0.19935606989871,0.190289943430743,0.210994520256849,0.181931685245578,0.313972149556162,-0.0339048805520119,0.000479337392244887,0.00530017978824569,0.0278577348393063,0.0355417906578425,0.0412614081151386,0.128374633710264,0.140794125259643,0.355981749002956,0.152469640240245,-0.0176073911878059,0.00165753480243305,-0.00599077053520237,0.0168391983121532,-0.00413335951378369,0.00841165626914687,0.0203012893988291,0.00687176295685589,-0.0216146550593934,-0.0122854819992331,-0.00806796543095091,0.417052824478464,0.248016639864645,0.318471069910062,0.302860547295478,0.322188689465847,0.277861742757384,0.280094615071924,0.275522483094175,0.286028296935285,0.278099555555499,0.252051722837179,0.303267904367369,0.305431042462356,0.289876994033819,0.107012724472744,0.0307907494673871,-0.0242735077242238,-0.0197328417679545,0.171057928009319,0.189402724040461,0.215571962956465,0.154353718144743,0.17025157625392,-0.0418763255609233,-0.00644528336631988,-0.0418763255609233,-0.0106955495081348,0.0147789678037528,-0.0113295025356066,0.0182155581701781,-0.0418763255609233,-0.0215878033671523,-0.0192259265388014,-0.036515649116224,-0.0236481460703181,-0.0136179263548633,-0.0182492222733063,-0.0153915393901381,-0.0180312850028475,0.0167164704096057,-0.00558049079882,0.00984154069262896,0.0147670140194663,-0.0173470339705463,0.0261656872834373,0.0130365093766605,0.0100801025150011,-0.00144882514646904,0.0155965797491548,0.0446832568306885,0.0291457792892484,-0.00924310830638433,0.0169853755351945,0.0184808827763779,-0.00983483728441256,-0.00704871258382588,0.00736710767704399,0.0207094748410265,0.0155554811881566,0.0211169097067075,0.0323020563781648,0.0024158191408192,-0.0176960151300472,0.0108810465709848,0.00285771529534895,0.00160559511827489,0.00490336873866254,0.00435689768746376,0.0130140796420728,0.0544316413210683,0.0129302826090478,0.0137549884838441,0.0374191145863329,0.0473480012168987
|coexpression_dpi_cluster_scores_median=0,0.374812541965839,0.221947893822551,0.939570011938875,0.793381594993783,0.220909281041545,0.333536012540613,0,0,0,0,0,0,0,0,0,0,0.084129859861042,0.0279020860741917,0,0.153106280842865,0,0,0.401169189647611,0.475149014432444,0.2645983963912,0.352461966204564,0.263833268597209,0.764585826935356,0.938631279606164,0.190434627270153,0,0,0,1.03177570342533,0.712075782947904,0.931066595746763,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.055272043172713,0,0,0,0,0,0.125346668336851,0,0,0,0,0,0,0,0,0,0,0.255100480297832,0.357941141880739,0.0300545597055,0,0,0,0,0,0,0,0.110319863569628,0,0,0,0,0.228480260119283,0,0,0.968224106238893,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0430998257964463,0,0,0,1.1770927768014,0.248891521923355,0,0,0,0,0,0.098043425305356,0.337141718919576,0.0662136857075299,0.0973736644748266,0.141036409786105,0.225192348419931,0.139241831090348,0.258577637711746,0.460961439647787,0,0,0,0.0805006992779881,0.0384935222863376,0.0294389011296462,0.0266298923127834,0.0298971899647678,0,0.0731640704872308,0.112756652096095,0,0,0,0,0,0,0,0,0.10536076625968,0,0,0,0,0.0358300855065507,0.085489078226422,0.421112830976558,0,0,0,0,0,0.0463679768904873,0,0.059507504784391,0.123062996466791,0.0642538110976656,0.353726674418046,0.155064609281699,0.336714826373178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0288216590713588,0,0,0.0663147875126409,0,0,0,0,0,0,0,0,0,0.0596340098159245,0,0,0,0,0,0,0,0,0,0,0.0233256667533105,0,0,0,0,0,0,0,0.363059837905097,0,0.0638344686817875,0,0,0.0374755578790873,0.055643654597214,0.0447367441903353,0,0,0,0.231897331272141,0,0,0.0222709268946923,0,0,0,0.0923568851569585,0.100975358632432,0.360307167084185,0,0,0,0,0,0,0,0,0,0,0,0,0.290534061368087,0.073907766449828,0,0,0.066458422198436,0.0726545746805335,0,0.0299122093309719,0.0608271539290338,0.0308041899510522,0.0398894237220457,0.099980008127235,0.143896423759131,0.139388180619654,0,0,0,0,0.0383547285828163,0.134336252040636,0.162863016520274,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0375226752578547,0,0.0269518943326477,0,0,0.0238095886952444,0,0,0,0,0,0,0,0.0195303707501796,0.017637724668944,0,0,0,0,0,0,0,0,0,0,0.0430926821803413,0,0,0,0
|gostat_on_MCL_coexpression=GO:0042613;MHC class II protein complex;0.0195077156806841;14999!GO:0051085;chaperone cofactor-dependent protein folding;0.0195077156806841;14999!GO:0006458;'de novo' protein folding;0.0195077156806841;14999!GO:0051084;'de novo' posttranslational protein folding;0.0195077156806841;14999!GO:0002495;antigen processing and presentation of peptide antigen via MHC class II;0.0195077156806841;14999!GO:0019886;antigen processing and presentation of exogenous peptide antigen via MHC class II;0.0195077156806841;14999!GO:0002478;antigen processing and presentation of exogenous peptide antigen;0.0195077156806841;14999!GO:0002504;antigen processing and presentation of peptide or polysaccharide antigen via MHC class II;0.0195077156806841;14999!GO:0019884;antigen processing and presentation of exogenous antigen;0.0209884571534992;14999!GO:0042611;MHC protein complex;0.0221723299436552;14999!GO:0048002;antigen processing and presentation of peptide antigen;0.0253775944494857;14999!GO:0019882;antigen processing and presentation;0.0389747969703214;14999!
|ontology_enrichment_celltype=CL:0002563!2.97e-11!9;CL:0002251!2.97e-11!9;CL:0000239!1.03e-07!6;CL:0000677!1.03e-07!6;CL:0000212!1.03e-07!6;CL:0000584!1.03e-07!6
|ontology_enrichment_disease=
|ontology_enrichment_uberon=UBERON:0005409!3.42e-22!47;UBERON:0004119!8.26e-22!118;UBERON:0000925!8.26e-22!118;UBERON:0006595!8.26e-22!118;UBERON:0000160!9.17e-22!31;UBERON:0001007!1.13e-21!116;UBERON:0001555!1.13e-21!116;UBERON:0007026!1.13e-21!116;UBERON:0004921!7.02e-20!114;UBERON:0000344!5.39e-18!15;UBERON:0001242!1.01e-15!13;UBERON:0000060!1.01e-15!13;UBERON:0001262!1.01e-15!13;UBERON:0004786!1.01e-15!13;UBERON:0004923!1.15e-15!24;UBERON:0003350!2.97e-11!9;UBERON:0004808!2.97e-11!9;UBERON:0001277!2.97e-11!9;UBERON:0000485!1.07e-08!11;UBERON:0005911!3.25e-08!69
|tfbs_overrepresentation_for_novel_motifs=0.393008,0.121181,0.367606,0.434198,0.260188,1.13872,0.538088,0.173246,0.181564,0.687027,0.494602,0.526159,0.173454,0.550255,0.275867,0,0.742571,0.252772,0.160384,0.29826,0.332107,0.223663,0.549359,0.717658,0.374936,0.577606,0.466037,0.469052,0.303071,0.376624,0.455168,0.843667,0.250677,0.136998,0.276324,1.66153,0.242032,0.522578,1.1836,0.195877,0.256422,0.460258,0.784847,0.761266,0.403938,0.423266,0.662995,0.484612,0.170971,0.305876,0.725127,0.604356,0.112729,0.985264,1.00271,0.557354,0.314394,0.513517,0.145699,0.555328,0.823643,0.613749,0.192045,0.713876,0.568415,0.754324,1.139,1.48833,0.818971,1.34113,0.349355,0.527912,0.0665967,1.03623,0.140213,0.131016,0.136938,0.651651,0.806481,0.336166,1.01677,0.759925,0.612313,0.501608,0.920903,0.025519,0.0299392,0.757533,0.667883,1.65055,1.20871,0.925879,0.856465,0.265734,0.218233,1.10739,0.1711,0.859272,0.663249,0.681235,0.679141,0.843387,0.967837,0.725721,0.724668,0.459825,0.784351,0.480639,0.340849,0.333829,0.386136,0.96962,0.337254,0.499714,2.72355,0.254749,0.0359654,0.437894,0.743872,0.670977,1.04163,0.692953,0.579418,1.56744,1.26989,0.810177,0.546178,0.849691,1.13749,0.268537,0.950857,0.427043,1.10792,0.570914,1.23736,0.061199,0.401212,0.461647,1.18819,2.01886,1.6187,1.14372,0.591394,0.854131,0.718197,0.460705,0.666107,1.9792,0.403515,0.261837,0.766041,0.0553085,0.986833,0.207643,0.569994,1.06851,0.605358,0.287226,0.39061,0.400939,1.1977,0.920047,0.810622,0.383936,0.714896,0.562634,0.676555,0.524587,0.0131724
|tfbs_overrepresentation_jaspar=MA0003.1;0.0545917,MA0004.1;1.10905,MA0006.1;0.271714,MA0007.1;1.07722,MA0009.1;0.870101,MA0014.1;0.0611475,MA0017.1;0.296816,MA0019.1;0.688051,MA0024.1;0.826339,MA0025.1;1.10341,MA0027.1;2.51754,MA0028.1;0.281528,MA0029.1;0.804619,MA0030.1;0.811181,MA0031.1;0.775627,MA0038.1;0.577528,MA0040.1;0.882616,MA0041.1;0.360875,MA0042.1;0.919611,MA0043.1;0.966833,MA0046.1;0.906029,MA0048.1;0.102483,MA0050.1;3.06864,MA0051.1;3.57551,MA0052.1;0.890676,MA0055.1;0.0283571,MA0056.1;0,MA0057.1;0.31126,MA0058.1;2.45447,MA0059.1;2.51175,MA0060.1;0.197678,MA0061.1;0.224905,MA0063.1;0,MA0066.1;0.566617,MA0067.1;1.21448,MA0068.1;0.657844,MA0069.1;0.891016,MA0070.1;2.04375,MA0071.1;0.471969,MA0072.1;0.872842,MA0073.1;0.138438,MA0074.1;0.531046,MA0076.1;0.315013,MA0077.1;0.851175,MA0078.1;0.61926,MA0081.1;0.375851,MA0083.1;0.96604,MA0084.1;1.54225,MA0087.1;0.922929,MA0088.1;0.064239,MA0089.1;0,MA0090.1;0.401197,MA0091.1;0.447561,MA0092.1;0.401504,MA0093.1;1.43515,MA0095.1;0,MA0098.1;0,MA0100.1;0.519598,MA0101.1;0.362124,MA0103.1;0.307078,MA0105.1;0.133231,MA0106.1;0.626997,MA0107.1;0.814533,MA0108.2;1.69252,MA0109.1;0,MA0111.1;0.415012,MA0113.1;0.598933,MA0114.1;1.18683,MA0115.1;0.969632,MA0116.1;0.747001,MA0117.1;0.937363,MA0119.1;0.362692,MA0122.1;0.957212,MA0124.1;1.16127,MA0125.1;1.0872,MA0130.1;0,MA0131.1;0.683521,MA0132.1;0,MA0133.1;0,MA0135.1;1.00325,MA0136.1;0.550755,MA0139.1;0.169849,MA0140.1;0.519484,MA0141.1;0.325895,MA0142.1;0.761136,MA0143.1;0.615203,MA0144.1;0.225588,MA0145.1;0.246409,MA0146.1;0.0169049,MA0147.1;1.24068,MA0148.1;0.450593,MA0149.1;0.367458,MA0062.2;0.137653,MA0035.2;0.524137,MA0039.2;0.254826,MA0138.2;0.675599,MA0002.2;0.988033,MA0137.2;0.32312,MA0104.2;1.03907,MA0047.2;0.576767,MA0112.2;0.2464,MA0065.2;0.0704227,MA0150.1;0.419883,MA0151.1;0,MA0152.1;0.576873,MA0153.1;1.01988,MA0154.1;0.100744,MA0155.1;0.0804339,MA0156.1;0.314185,MA0157.1;0.729116,MA0158.1;0,MA0159.1;0.246253,MA0160.1;0.453546,MA0161.1;0,MA0162.1;0.0211019,MA0163.1;0.0186439,MA0164.1;0.551114,MA0080.2;0.302064,MA0018.2;0.560731,MA0099.2;0.669311,MA0079.2;0.685525,MA0102.2;1.59466,MA0258.1;0.60477,MA0259.1;0.643936,MA0442.1;0
}}

Latest revision as of 16:05, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr11:53670461..53670487,+p@chr11:53670461..53670487
+
Mm9::chr16:10489821..10489850,+p4@Ciita
Mm9::chr16:10489852..10489897,+p2@Ciita
Mm9::chr16:55816886..55816906,+p@chr16:55816886..55816906
+
Mm9::chr17:34290110..34290184,+p1@H2-DMb1
Mm9::chr17:84555738..84555750,-p@chr17:84555738..84555750
-
Mm9::chr5:73948518..73948529,+p@chr5:73948518..73948529
+
Mm9::chr5:73948543..73948565,+p@chr5:73948543..73948565
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data




Relative expression of the co-expression cluster over median <br>Analyst:





Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>



TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data


Novel motifs




JASPAR motifs