FFCP PHASE1:Hg19::chr17:39675950..39675974,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |||
|TSSclassifier=not | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|coexpression_cluster_id=C234 | |||
|description=CAGE_peak_at_chr17:39675950..39675974,- | |||
|id=chr17:39675950..39675974,- | |||
|ontology_enrichment_celltype=CL:0002076!9.19e-12!43;CL:0000066!5.80e-11!254;CL:0000076!5.87e-11!62;CL:0002251!8.51e-11!21;CL:0000223!1.31e-09!59;CL:0002231!1.07e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0002535;5.69e-21;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002535,6.96e-21,2;CL:0000076,9.94e-11,63 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:1749!3.23e-28!14;DOID:305!4.91e-14!106;DOID:0050687!2.88e-09!143;DOID:14566!5.03e-09!239;DOID:162!2.16e-08!235 | |||
|ontology_enrichment_disease_v019=DOID:1749;1.76e-45;14!DOID:3151;9.91e-41;1!DOID:3149;9.91e-41;1!DOID:3451;3.81e-21;2!DOID:4159;3.81e-21;2!DOID:0060122;3.81e-21;2!DOID:4362;3.22e-09;5 | |||
|ontology_enrichment_disease_v019_2=DOID:1749,1.76e-45,14;DOID:3151,9.91e-41,1;DOID:3149,9.91e-41,1;DOID:3451,3.81e-21,2;DOID:4159,3.81e-21,2;DOID:0060122,3.81e-21,2;DOID:4362,3.49e-09,5 | |||
|ontology_enrichment_uberon=UBERON:0000161!2.49e-12!35;UBERON:0003343!3.01e-12!4;UBERON:0004785!3.01e-12!4;UBERON:0000344!3.62e-10!12;UBERON:0003729!6.90e-10!5;UBERON:0000166!4.55e-08!21;UBERON:0005153!3.16e-07!37 | |||
|ontology_enrichment_uberon_v019=UBERON:0000997;2.21e-40;1!UBERON:0005056;2.21e-40;1!UBERON:0004176;2.21e-40;1!UBERON:0006955;5.69e-21;2!UBERON:0004801;5.69e-21;2!UBERON:0003343;2.53e-11;4!UBERON:0004785;2.53e-11;4!UBERON:0000014;2.80e-11;4!UBERON:0000974;5.54e-08;6!UBERON:0000002;6.78e-08;6!UBERON:0001560;6.78e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000997,1.48e-40,1;UBERON:0005056,1.48e-40,1;UBERON:0006955,6.96e-21,2;UBERON:0004801,6.96e-21,2;UBERON:0003343,2.53e-11,4;UBERON:0004785,2.53e-11,4;UBERON:0000014,2.80e-11,4;UBERON:0000002,7.25e-08,6;UBERON:0001560,7.25e-08,6 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286804595389004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.268675568108545,0.290633938513962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.200506470303285,0.368323955743585,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.697118721393016,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0.173559738335131,1.37189356380129,1.04471047896483,0,0,0.0967563312890851,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0.144090417154106,0,0,0,0,0,0.271808412147228,0.104602846312333,0,0,0,0,0,0,0,0,0,0,0.399358000997982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.68347750079413,0,0,0,0,0,0,0,0,0,0.864221491201268,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0.249960815924213,0,0,0,0,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179088841081487,0,0,0,0.192914038270915,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.80923820655025,0,0.366857197043358,0.231051332300676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127762427639595,0,0,0,0,0,0,0,0,0,0,0.111231401892069,0,0,0,0,0,0,0,0,0,0,0,0,0.3414369541879,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0,0.357107877211315,0.352894871715692,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0.162806537221949,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr17:39675950..39675974,- | |||
}} |
Revision as of 15:17, 20 January 2014
Short description: | p@chr17:39675950..39675974, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | No |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:39675950..39675974, - |
Coexpression cluster: | C234_oral_epidermoid_malignant_cervical_ductal_lung_keratoacanthoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of cervix | 6.96e-21 | 2 |
squamous epithelial cell | 9.94e-11 | 63 |
Ontology term | p-value | n |
---|---|---|
mammalian vulva | 1.48e-40 | 1 |
external female genitalia | 1.48e-40 | 1 |
uterine epithelium | 6.96e-21 | 2 |
cervix epithelium | 6.96e-21 | 2 |
mucosa of oral region | 2.53e-11 | 4 |
respiratory system mucosa | 2.53e-11 | 4 |
zone of skin | 2.80e-11 | 4 |
uterine cervix | 7.25e-08 | 6 |
neck of organ | 7.25e-08 | 6 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 1.76e-45 | 14 |
skin squamous cell carcinoma | 9.91e-41 | 1 |
keratoacanthoma | 9.91e-41 | 1 |
skin carcinoma | 3.81e-21 | 2 |
skin cancer | 3.81e-21 | 2 |
integumentary system cancer | 3.81e-21 | 2 |
cervical cancer | 3.49e-09 | 5 |